Wall clock time and date at job start Tue Mar 31 2020 17:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47088 * 2 1 4 4 C 1.53000 * 109.47065 * 120.00294 * 2 1 3 5 5 O 1.42897 * 109.47025 * 294.99545 * 4 2 1 6 6 C 1.42899 * 113.99747 * 179.97438 * 5 4 2 7 7 C 1.50704 * 109.47155 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99470 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00259 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99774 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47061 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46682 * 64.99728 * 11 10 9 13 13 C 1.52996 * 109.47440 * 185.00132 * 11 10 9 14 14 N 1.46501 * 109.47167 * 305.00645 * 11 10 9 15 15 C 1.46498 * 119.99583 * 299.99733 * 14 11 10 16 16 C 1.36938 * 120.00295 * 119.99747 * 14 11 10 17 17 H 1.07993 * 120.00125 * 23.11942 * 16 14 11 18 18 C 1.38812 * 119.99937 * 203.11854 * 16 14 11 19 19 N 1.31627 * 120.00050 * 11.68707 * 18 16 14 20 20 Si 1.86798 * 120.00137 * 191.68848 * 18 16 14 21 21 H 1.48507 * 109.46960 * 59.99706 * 20 18 16 22 22 H 1.48495 * 109.47177 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47117 * 300.00160 * 20 18 16 24 24 C 1.50701 * 109.47031 * 240.00058 * 2 1 3 25 25 C 1.38240 * 120.00358 * 299.72872 * 24 2 1 26 26 C 1.38231 * 120.00086 * 179.80986 * 25 24 2 27 27 C 1.38232 * 120.00238 * 0.39374 * 26 25 24 28 28 C 1.38233 * 119.99792 * 359.86357 * 27 26 25 29 29 C 1.38235 * 120.00447 * 359.94579 * 28 27 26 30 30 H 1.09007 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47221 * 299.99686 * 1 2 3 32 32 H 1.09000 * 109.47315 * 60.00129 * 1 2 3 33 33 H 1.08996 * 109.47152 * 55.00378 * 4 2 1 34 34 H 1.09007 * 109.47071 * 174.99797 * 4 2 1 35 35 H 1.08994 * 109.47656 * 299.99991 * 6 5 4 36 36 H 1.09001 * 109.47186 * 60.00696 * 6 5 4 37 37 H 0.96994 * 120.00268 * 0.02562 * 9 7 6 38 38 H 1.08993 * 109.47415 * 299.99922 * 10 9 7 39 39 H 1.09002 * 109.47297 * 60.00569 * 10 9 7 40 40 H 1.09003 * 109.47078 * 59.99794 * 13 11 10 41 41 H 1.09000 * 109.46923 * 180.02562 * 13 11 10 42 42 H 1.08999 * 109.47121 * 300.00347 * 13 11 10 43 43 H 1.08995 * 109.47735 * 93.93662 * 15 14 11 44 44 H 1.09004 * 109.47414 * 213.94123 * 15 14 11 45 45 H 1.09005 * 109.47247 * 333.93349 * 15 14 11 46 46 H 0.96998 * 119.99847 * 179.97438 * 19 18 16 47 47 H 1.08001 * 119.99301 * 359.97438 * 25 24 2 48 48 H 1.08006 * 119.99567 * 180.22924 * 26 25 24 49 49 H 1.08001 * 120.00095 * 179.82831 * 27 26 25 50 50 H 1.08008 * 120.00112 * 179.97438 * 28 27 26 51 51 H 1.08001 * 120.00418 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 0.0167 2.4130 6 6 2.0914 -0.5746 3.6410 7 6 1.6404 0.2822 4.7959 8 8 1.0126 1.2988 4.5877 9 7 1.9346 -0.0813 6.0599 10 6 1.4966 0.7520 7.1824 11 6 1.9562 0.1189 8.4973 12 1 3.0453 0.1242 8.5419 13 6 1.3937 0.9199 9.6731 14 7 1.4713 -1.2616 8.5703 15 6 0.0328 -1.5358 8.5293 16 6 2.3627 -2.2957 8.6769 17 1 3.3510 -2.1179 9.0741 18 6 1.9958 -3.5725 8.2743 19 7 0.8900 -3.7525 7.5834 20 14 3.0714 -5.0354 8.7132 21 1 3.1823 -5.1428 10.1902 22 1 2.4634 -6.2770 8.1713 23 1 4.4233 -4.8492 8.1276 24 6 2.0323 -0.7104 -1.2305 25 6 1.7030 -2.0355 -1.4465 26 6 2.1605 -2.6860 -2.5772 27 6 2.9541 -2.0138 -3.4878 28 6 3.2878 -0.6903 -3.2691 29 6 2.8270 -0.0386 -2.1405 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -1.7199 1.2950 34 1 3.1264 -0.7996 1.2055 35 1 1.6575 -1.5699 3.7364 36 1 3.1788 -0.6501 3.6472 37 1 2.4370 -0.8941 6.2263 38 1 1.9302 1.7474 7.0869 39 1 0.4092 0.8272 7.1765 40 1 0.3046 0.9146 9.6285 41 1 1.7215 0.4691 10.6098 42 1 1.7545 1.9470 9.6188 43 1 -0.2687 -1.7418 7.5024 44 1 -0.1902 -2.4008 9.1540 45 1 -0.5131 -0.6687 8.9013 46 1 0.6339 -4.6446 7.3018 47 1 1.0861 -2.5617 -0.7331 48 1 1.9001 -3.7202 -2.7477 49 1 3.3138 -2.5228 -4.3698 50 1 3.9082 -0.1651 -3.9804 51 1 3.0874 0.9956 -1.9699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725195727.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:04 Heat of formation + Delta-G solvation = -44.821590 kcal Electronic energy + Delta-G solvation = -28558.819550 eV Core-core repulsion = 24651.681211 eV Total energy + Delta-G solvation = -3907.138339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.82192 -39.20628 -37.63864 -36.57932 -34.62205 -33.62546 -32.06745 -31.14430 -29.80503 -29.38847 -28.21604 -26.26649 -26.05014 -24.82216 -23.39382 -23.00830 -22.60558 -20.34467 -19.83577 -19.28894 -17.27095 -16.96223 -16.75031 -16.41604 -16.18967 -15.49658 -15.20704 -15.17903 -14.94798 -14.46007 -14.20489 -14.00029 -13.70712 -13.50882 -13.29732 -13.14105 -12.83715 -12.68483 -12.49298 -12.23013 -12.14905 -12.02102 -11.91947 -11.62013 -11.48860 -11.15414 -11.09719 -10.96985 -10.82658 -10.76103 -10.71938 -10.43659 -10.33593 -9.89991 -9.82090 -9.59320 -9.26709 -9.14736 -8.93761 -8.63343 -8.35276 -6.84503 -5.80102 -3.28262 1.10920 1.17236 3.13263 3.21346 3.31188 3.38399 3.39312 3.57457 4.22956 4.40829 4.55071 4.66958 4.78537 4.87119 4.93539 5.04290 5.22807 5.25597 5.28231 5.31330 5.32759 5.37498 5.38957 5.49274 5.53490 5.60536 5.63467 5.78033 5.79628 5.87723 5.95178 5.98084 6.08518 6.15199 6.18499 6.27334 6.30348 6.35361 6.39159 6.45422 6.68475 6.77368 6.79997 6.89449 7.07566 7.20555 7.37125 7.69303 7.75620 8.21857 8.31439 8.82805 9.15563 9.78574 10.28709 11.22805 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012831 B = 0.002393 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.663582 B =11699.320022 C =13201.410829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.049 4.049 3 H 0.087 0.913 4 C 0.068 3.932 5 O -0.361 6.361 6 C 0.046 3.954 7 C 0.512 3.488 8 O -0.544 6.544 9 N -0.699 5.699 10 C 0.110 3.890 11 C 0.158 3.842 12 H 0.068 0.932 13 C -0.158 4.158 14 N -0.594 5.594 15 C 0.163 3.837 16 C -0.261 4.261 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.902 5.902 20 Si 0.902 3.098 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.283 1.283 24 C -0.073 4.073 25 C -0.114 4.114 26 C -0.119 4.119 27 C -0.126 4.126 28 C -0.120 4.120 29 C -0.114 4.114 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.414 0.586 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.052 0.948 41 H 0.056 0.944 42 H 0.046 0.954 43 H 0.029 0.971 44 H 0.042 0.958 45 H -0.002 1.002 46 H 0.253 0.747 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.609 4.770 -16.952 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 H 0.106 0.894 4 C -0.009 4.009 5 O -0.279 6.279 6 C -0.034 4.034 7 C 0.297 3.703 8 O -0.422 6.422 9 N -0.352 5.352 10 C -0.016 4.016 11 C 0.049 3.951 12 H 0.087 0.913 13 C -0.218 4.218 14 N -0.317 5.317 15 C 0.019 3.981 16 C -0.390 4.390 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.210 1.210 24 C -0.073 4.073 25 C -0.132 4.132 26 C -0.137 4.137 27 C -0.144 4.144 28 C -0.138 4.138 29 C -0.132 4.132 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.251 0.749 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.017 0.983 46 H 0.063 0.937 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.139 0.861 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.962 5.484 -17.156 18.253 hybrid contribution 0.908 -1.719 0.276 1.963 sum 3.870 3.765 -16.880 17.722 Atomic orbital electron populations 1.21801 0.93340 1.02177 1.02516 1.20058 0.97089 0.99668 0.89918 0.89424 1.22562 0.98576 0.94784 0.84929 1.87951 1.78476 1.49098 1.12379 1.22200 0.99751 0.96974 0.84492 1.20057 0.80305 0.85966 0.83998 1.90659 1.40317 1.26116 1.85140 1.45710 1.56819 1.28202 1.04445 1.21925 0.99611 0.92865 0.87165 1.20655 0.97728 0.85995 0.90716 0.91341 1.22169 1.01333 0.98690 0.99585 1.43937 1.02613 0.99713 1.85448 1.20749 0.82417 0.95298 0.99639 1.19172 0.96273 0.87598 1.35963 0.91533 1.25018 0.97732 0.98244 0.98376 1.70073 1.24464 1.21216 1.38910 0.86382 0.79779 0.82350 0.78237 1.21175 1.21729 1.20982 1.19793 0.97393 0.94230 0.95931 1.21091 1.00048 0.94302 0.97710 1.21164 0.98029 0.99952 0.94525 1.21154 0.98825 0.94921 0.99487 1.21141 1.00115 0.94984 0.97574 1.21111 0.97678 1.00032 0.94419 0.92653 0.90888 0.92738 0.92931 0.93182 0.89945 0.90729 0.74879 0.92872 0.92409 0.92931 0.92441 0.93545 0.95311 0.93972 0.98322 0.93680 0.85886 0.86055 0.86249 0.86124 0.85952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.91 37.16 0.33 -1.24 16 2 C -0.05 -0.54 2.80 -91.77 -0.26 -0.80 16 3 H 0.09 0.97 7.88 -51.93 -0.41 0.56 16 4 C 0.07 0.84 5.05 37.16 0.19 1.03 16 5 O -0.36 -5.75 9.41 -55.14 -0.52 -6.27 16 6 C 0.05 0.72 6.42 36.01 0.23 0.95 16 7 C 0.51 9.83 7.91 -10.99 -0.09 9.74 16 8 O -0.54 -12.23 16.50 -14.36 -0.24 -12.46 16 9 N -0.70 -13.28 5.39 -60.29 -0.32 -13.60 16 10 C 0.11 2.06 4.97 -4.04 -0.02 2.04 16 11 C 0.16 2.97 2.87 -67.93 -0.19 2.78 16 12 H 0.07 1.27 7.87 -51.93 -0.41 0.86 16 13 C -0.16 -2.59 9.18 37.16 0.34 -2.25 16 14 N -0.59 -13.48 2.29 -173.48 -0.40 -13.88 16 15 C 0.16 3.84 8.10 59.85 0.49 4.33 16 16 C -0.26 -6.46 9.32 -15.06 -0.14 -6.60 16 17 H 0.07 1.62 7.82 -52.49 -0.41 1.21 16 18 C 0.01 0.13 5.12 -17.43 -0.09 0.05 16 19 N -0.90 -24.25 10.65 55.49 0.59 -23.66 16 20 Si 0.90 20.47 29.57 -169.99 -5.03 15.44 16 21 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.07 -0.74 4.78 -104.62 -0.50 -1.24 16 25 C -0.11 -1.10 8.76 -39.58 -0.35 -1.45 16 26 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 27 C -0.13 -1.04 10.05 -39.59 -0.40 -1.44 16 28 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 29 C -0.11 -1.06 9.67 -39.58 -0.38 -1.45 16 30 H 0.05 0.58 7.40 -51.93 -0.38 0.20 16 31 H 0.07 0.95 7.82 -51.93 -0.41 0.54 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.61 7.55 -51.93 -0.39 0.22 16 34 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.41 8.12 7.89 -40.82 -0.32 7.80 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.17 7.84 -51.93 -0.41 0.76 16 40 H 0.05 0.87 6.66 -51.93 -0.35 0.53 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.03 0.74 7.41 -51.93 -0.38 0.36 16 44 H 0.04 1.08 7.23 -51.93 -0.38 0.70 16 45 H 0.00 -0.04 6.43 -51.93 -0.33 -0.37 16 46 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 47 H 0.12 1.11 7.16 -52.49 -0.38 0.73 16 48 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 49 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 50 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 51 H 0.12 0.97 7.95 -52.49 -0.42 0.55 16 LS Contribution 413.53 15.07 6.23 6.23 Total: -1.00 -29.92 413.53 -10.05 -39.97 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -8.74 Total: 6.63 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.64 Total: 1.60 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.13 Total: -51.14 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.76 Total: -18.73 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -29.92 -10.05 -39.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725195727.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.851 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds