Wall clock time and date at job start Tue Mar 31 2020 17:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47088 * 2 1 4 4 C 1.53000 * 109.47065 * 120.00294 * 2 1 3 5 5 O 1.42897 * 109.47025 * 294.99545 * 4 2 1 6 6 C 1.42899 * 113.99747 * 179.97438 * 5 4 2 7 7 C 1.50704 * 109.47155 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99470 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00259 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99774 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.47061 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46682 * 64.99728 * 11 10 9 13 13 C 1.52996 * 109.47440 * 185.00132 * 11 10 9 14 14 N 1.46501 * 109.47167 * 305.00645 * 11 10 9 15 15 C 1.46498 * 119.99583 * 299.99733 * 14 11 10 16 16 C 1.36938 * 120.00295 * 119.99747 * 14 11 10 17 17 H 1.07993 * 120.00125 * 23.11942 * 16 14 11 18 18 C 1.38812 * 119.99937 * 203.11854 * 16 14 11 19 19 N 1.31627 * 120.00050 * 11.68707 * 18 16 14 20 20 Si 1.86798 * 120.00137 * 191.68848 * 18 16 14 21 21 H 1.48507 * 109.46960 * 59.99706 * 20 18 16 22 22 H 1.48495 * 109.47177 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47117 * 300.00160 * 20 18 16 24 24 C 1.50701 * 109.47031 * 240.00058 * 2 1 3 25 25 C 1.38240 * 120.00358 * 299.72872 * 24 2 1 26 26 C 1.38231 * 120.00086 * 179.80986 * 25 24 2 27 27 C 1.38232 * 120.00238 * 0.39374 * 26 25 24 28 28 C 1.38233 * 119.99792 * 359.86357 * 27 26 25 29 29 C 1.38235 * 120.00447 * 359.94579 * 28 27 26 30 30 H 1.09007 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47221 * 299.99686 * 1 2 3 32 32 H 1.09000 * 109.47315 * 60.00129 * 1 2 3 33 33 H 1.08996 * 109.47152 * 55.00378 * 4 2 1 34 34 H 1.09007 * 109.47071 * 174.99797 * 4 2 1 35 35 H 1.08994 * 109.47656 * 299.99991 * 6 5 4 36 36 H 1.09001 * 109.47186 * 60.00696 * 6 5 4 37 37 H 0.96994 * 120.00268 * 0.02562 * 9 7 6 38 38 H 1.08993 * 109.47415 * 299.99922 * 10 9 7 39 39 H 1.09002 * 109.47297 * 60.00569 * 10 9 7 40 40 H 1.09003 * 109.47078 * 59.99794 * 13 11 10 41 41 H 1.09000 * 109.46923 * 180.02562 * 13 11 10 42 42 H 1.08999 * 109.47121 * 300.00347 * 13 11 10 43 43 H 1.08995 * 109.47735 * 93.93662 * 15 14 11 44 44 H 1.09004 * 109.47414 * 213.94123 * 15 14 11 45 45 H 1.09005 * 109.47247 * 333.93349 * 15 14 11 46 46 H 0.96998 * 119.99847 * 179.97438 * 19 18 16 47 47 H 1.08001 * 119.99301 * 359.97438 * 25 24 2 48 48 H 1.08006 * 119.99567 * 180.22924 * 26 25 24 49 49 H 1.08001 * 120.00095 * 179.82831 * 27 26 25 50 50 H 1.08008 * 120.00112 * 179.97438 * 28 27 26 51 51 H 1.08001 * 120.00418 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 0.0167 2.4130 6 6 2.0914 -0.5746 3.6410 7 6 1.6404 0.2822 4.7959 8 8 1.0126 1.2988 4.5877 9 7 1.9346 -0.0813 6.0599 10 6 1.4966 0.7520 7.1824 11 6 1.9562 0.1189 8.4973 12 1 3.0453 0.1242 8.5419 13 6 1.3937 0.9199 9.6731 14 7 1.4713 -1.2616 8.5703 15 6 0.0328 -1.5358 8.5293 16 6 2.3627 -2.2957 8.6769 17 1 3.3510 -2.1179 9.0741 18 6 1.9958 -3.5725 8.2743 19 7 0.8900 -3.7525 7.5834 20 14 3.0714 -5.0354 8.7132 21 1 3.1823 -5.1428 10.1902 22 1 2.4634 -6.2770 8.1713 23 1 4.4233 -4.8492 8.1276 24 6 2.0323 -0.7104 -1.2305 25 6 1.7030 -2.0355 -1.4465 26 6 2.1605 -2.6860 -2.5772 27 6 2.9541 -2.0138 -3.4878 28 6 3.2878 -0.6903 -3.2691 29 6 2.8270 -0.0386 -2.1405 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -1.7199 1.2950 34 1 3.1264 -0.7996 1.2055 35 1 1.6575 -1.5699 3.7364 36 1 3.1788 -0.6501 3.6472 37 1 2.4370 -0.8941 6.2263 38 1 1.9302 1.7474 7.0869 39 1 0.4092 0.8272 7.1765 40 1 0.3046 0.9146 9.6285 41 1 1.7215 0.4691 10.6098 42 1 1.7545 1.9470 9.6188 43 1 -0.2687 -1.7418 7.5024 44 1 -0.1902 -2.4008 9.1540 45 1 -0.5131 -0.6687 8.9013 46 1 0.6339 -4.6446 7.3018 47 1 1.0861 -2.5617 -0.7331 48 1 1.9001 -3.7202 -2.7477 49 1 3.3138 -2.5228 -4.3698 50 1 3.9082 -0.1651 -3.9804 51 1 3.0874 0.9956 -1.9699 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725195727.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:03 Heat of formation + Delta-G solvation = -59.760541 kcal Electronic energy + Delta-G solvation = -28559.467351 eV Core-core repulsion = 24651.681211 eV Total energy + Delta-G solvation = -3907.786140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.83704 -40.41578 -38.85477 -38.17516 -35.53077 -35.32294 -33.77545 -31.79551 -31.21893 -30.52748 -29.44496 -27.98049 -27.33689 -26.16486 -24.82140 -24.14890 -23.29668 -21.51426 -21.05565 -20.84195 -18.81638 -18.18234 -18.11044 -17.49256 -17.37847 -16.97105 -16.56845 -16.27521 -15.93955 -15.86667 -15.46194 -15.34502 -14.72023 -14.63554 -14.50157 -14.30348 -14.13556 -14.08421 -13.75513 -13.60814 -13.36801 -13.20636 -13.07048 -12.92757 -12.78431 -12.57237 -12.48212 -12.31521 -12.25895 -12.10703 -12.04016 -11.74029 -11.72315 -11.59194 -11.46589 -10.82060 -10.71553 -10.57126 -9.92475 -9.81140 -9.63718 -8.74131 -7.74796 -5.24180 0.42442 0.50884 1.51437 1.55016 1.59379 1.63122 1.94020 2.54942 2.84227 3.06443 3.38699 3.66623 3.74369 3.84510 3.85724 4.09064 4.09934 4.15453 4.17761 4.21078 4.27129 4.31132 4.34783 4.42223 4.58535 4.60082 4.63616 4.64188 4.73251 4.77420 4.84951 4.86870 4.94705 5.07400 5.10656 5.12949 5.18958 5.29306 5.30766 5.32623 5.48393 5.59100 5.62391 5.64006 5.72646 5.72936 5.77339 6.03751 6.12586 6.38528 6.67814 7.20969 7.29678 7.92108 8.38483 9.26449 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.012831 B = 0.002393 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.663582 B =11699.320022 C =13201.410829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 H 0.083 0.917 4 C 0.066 3.934 5 O -0.384 6.384 6 C 0.052 3.948 7 C 0.508 3.492 8 O -0.581 6.581 9 N -0.698 5.698 10 C 0.115 3.885 11 C 0.157 3.843 12 H 0.076 0.924 13 C -0.150 4.150 14 N -0.602 5.602 15 C 0.182 3.818 16 C -0.258 4.258 17 H 0.074 0.926 18 C -0.042 4.042 19 N -0.930 5.930 20 Si 0.960 3.040 21 H -0.288 1.288 22 H -0.302 1.302 23 H -0.273 1.273 24 C -0.085 4.085 25 C -0.127 4.127 26 C -0.127 4.127 27 C -0.129 4.129 28 C -0.124 4.124 29 C -0.125 4.125 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.412 0.588 38 H 0.070 0.930 39 H 0.039 0.961 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.000 1.000 44 H 0.014 0.986 45 H 0.021 0.979 46 H 0.245 0.755 47 H 0.123 0.877 48 H 0.138 0.862 49 H 0.142 0.858 50 H 0.142 0.858 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.352 4.951 -17.714 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.062 4.062 3 H 0.102 0.898 4 C -0.010 4.010 5 O -0.303 6.303 6 C -0.028 4.028 7 C 0.294 3.706 8 O -0.462 6.462 9 N -0.350 5.350 10 C -0.011 4.011 11 C 0.050 3.950 12 H 0.094 0.906 13 C -0.209 4.209 14 N -0.325 5.325 15 C 0.037 3.963 16 C -0.388 4.388 17 H 0.091 0.909 18 C -0.238 4.238 19 N -0.576 5.576 20 Si 0.789 3.211 21 H -0.214 1.214 22 H -0.229 1.229 23 H -0.198 1.198 24 C -0.085 4.085 25 C -0.145 4.145 26 C -0.145 4.145 27 C -0.147 4.147 28 C -0.142 4.142 29 C -0.143 4.143 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.249 0.751 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.018 0.982 44 H 0.033 0.967 45 H 0.039 0.961 46 H 0.054 0.946 47 H 0.141 0.859 48 H 0.155 0.845 49 H 0.160 0.840 50 H 0.160 0.840 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.735 5.686 -17.904 19.372 hybrid contribution 0.380 -1.723 0.492 1.831 sum 5.115 3.963 -17.412 18.575 Atomic orbital electron populations 1.21750 0.93756 1.02188 1.01762 1.19989 0.96734 0.99499 0.89986 0.89818 1.22746 0.99353 0.94881 0.84064 1.87929 1.79069 1.50129 1.13161 1.22156 1.01276 0.95885 0.83459 1.20660 0.79442 0.85756 0.84730 1.90633 1.42030 1.27889 1.85665 1.45770 1.56482 1.27986 1.04740 1.21877 0.98562 0.93652 0.86976 1.20843 0.98247 0.84229 0.91685 0.90553 1.22065 1.00895 0.99945 0.97984 1.44065 1.01954 1.01077 1.85418 1.20411 0.83516 0.95039 0.97361 1.19458 0.96568 0.88148 1.34666 0.90864 1.25626 0.98857 1.00401 0.98905 1.70233 1.26040 1.20902 1.40405 0.85466 0.78764 0.79324 0.77509 1.21429 1.22875 1.19827 1.19728 0.98406 0.94546 0.95820 1.21211 1.00526 0.94350 0.98390 1.21431 0.97938 1.00853 0.94243 1.21493 0.98174 0.95017 0.99995 1.21448 0.99976 0.95258 0.97537 1.21315 0.97653 1.00650 0.94696 0.92279 0.93244 0.91757 0.92398 0.92067 0.89654 0.87905 0.75127 0.91200 0.94223 0.93429 0.92681 0.90489 0.98165 0.96691 0.96088 0.94554 0.85857 0.84459 0.84022 0.83996 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.91 71.98 0.64 -2.46 16 2 C -0.04 -0.95 2.80 -11.54 -0.03 -0.99 16 3 H 0.08 1.86 7.88 -2.39 -0.02 1.85 16 4 C 0.07 1.59 5.05 71.98 0.36 1.95 16 5 O -0.38 -12.25 9.41 -129.94 -1.22 -13.47 16 6 C 0.05 1.60 6.42 71.24 0.46 2.06 16 7 C 0.51 19.49 7.91 87.66 0.69 20.18 16 8 O -0.58 -26.41 16.50 15.98 0.26 -26.15 16 9 N -0.70 -26.25 5.39 -463.05 -2.49 -28.75 16 10 C 0.12 4.19 4.97 86.38 0.43 4.62 16 11 C 0.16 5.66 2.87 44.99 0.13 5.79 16 12 H 0.08 2.65 7.87 -2.38 -0.02 2.64 16 13 C -0.15 -4.55 9.18 71.98 0.66 -3.89 16 14 N -0.60 -26.94 2.29 -702.78 -1.61 -28.55 16 15 C 0.18 8.63 8.10 127.77 1.04 9.67 16 16 C -0.26 -12.59 9.32 84.03 0.78 -11.81 16 17 H 0.07 3.44 7.82 -2.91 -0.02 3.42 16 18 C -0.04 -2.14 5.12 84.86 0.43 -1.70 16 19 N -0.93 -50.72 10.65 21.65 0.23 -50.49 16 20 Si 0.96 41.90 29.57 68.60 2.03 43.93 16 21 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 C -0.08 -1.66 4.78 -19.86 -0.09 -1.75 16 25 C -0.13 -2.36 8.76 22.27 0.20 -2.16 16 26 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 27 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 28 C -0.12 -1.83 10.05 22.27 0.22 -1.61 16 29 C -0.13 -2.17 9.67 22.27 0.22 -1.95 16 30 H 0.06 1.25 7.40 -2.38 -0.02 1.24 16 31 H 0.05 1.33 7.82 -2.39 -0.02 1.32 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.32 7.55 -2.39 -0.02 1.30 16 34 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.41 15.95 7.89 -92.71 -0.73 15.22 16 38 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.04 1.59 7.84 -2.39 -0.02 1.57 16 40 H 0.05 1.49 6.66 -2.39 -0.02 1.47 16 41 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.00 0.00 7.41 -2.39 -0.02 -0.02 16 44 H 0.01 0.76 7.23 -2.39 -0.02 0.74 16 45 H 0.02 0.88 6.43 -2.38 -0.02 0.86 16 46 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 47 H 0.12 2.18 7.16 -2.91 -0.02 2.16 16 48 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 49 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 50 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 51 H 0.13 1.93 7.95 -2.91 -0.02 1.91 16 Total: -1.00 -64.19 413.53 3.95 -60.24 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: 0.17 Total: 30.70 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.58 Total: 12.53 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -3.87 Total: -107.79 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.96 Total: -39.61 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -64.19 3.95 -60.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725195727.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.481 kcal (2) G-P(sol) polarization free energy of solvation -64.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds