Wall clock time and date at job start Tue Mar 31 2020 19:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.46793 * 2 1 4 4 C 1.35906 * 116.99617 * 179.97438 * 3 2 1 5 5 C 1.38746 * 120.05681 * 0.02562 * 4 3 2 6 6 C 1.38122 * 119.94521 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05290 * 359.73874 * 6 5 4 8 8 C 1.38244 * 120.11467 * 0.51873 * 7 6 5 9 9 C 1.50694 * 119.97663 * 179.76058 * 8 7 6 10 10 C 1.53000 * 109.47545 * 269.72456 * 9 8 7 11 11 C 1.50700 * 109.47181 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99869 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99577 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99726 * 179.72317 * 13 11 10 15 15 C 1.52994 * 109.47295 * 180.27793 * 14 13 11 16 16 H 1.09008 * 109.46772 * 65.00253 * 15 14 13 17 17 C 1.52993 * 109.47273 * 185.00249 * 15 14 13 18 18 N 1.46505 * 109.47151 * 305.00666 * 15 14 13 19 19 C 1.46502 * 119.99666 * 299.99650 * 18 15 14 20 20 C 1.36936 * 119.99844 * 119.99815 * 18 15 14 21 21 H 1.07999 * 120.00119 * 23.12014 * 20 18 15 22 22 C 1.38809 * 119.99492 * 203.11811 * 20 18 15 23 23 N 1.31624 * 120.00472 * 11.68654 * 22 20 18 24 24 Si 1.86801 * 119.99923 * 191.69093 * 22 20 18 25 25 H 1.48499 * 109.47315 * 59.99693 * 24 22 20 26 26 H 1.48499 * 109.47538 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46828 * 299.99766 * 24 22 20 28 28 C 1.38174 * 120.05123 * 359.48419 * 8 7 6 29 29 H 1.08998 * 109.46905 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47465 * 300.00070 * 1 2 3 31 31 H 1.09001 * 109.46839 * 60.00222 * 1 2 3 32 32 H 1.08992 * 109.47009 * 240.00016 * 2 1 3 33 33 H 1.09001 * 109.46839 * 119.99778 * 2 1 3 34 34 H 1.08000 * 120.02673 * 359.95411 * 5 4 3 35 35 H 1.07997 * 119.97301 * 180.02562 * 6 5 4 36 36 H 1.08006 * 119.94452 * 180.27709 * 7 6 5 37 37 H 1.08999 * 109.47080 * 149.71886 * 9 8 7 38 38 H 1.09005 * 109.47120 * 29.72594 * 9 8 7 39 39 H 1.09001 * 109.46964 * 59.99328 * 10 9 8 40 40 H 1.09000 * 109.46717 * 299.99822 * 10 9 8 41 41 H 0.96992 * 119.99731 * 0.02562 * 13 11 10 42 42 H 1.09001 * 109.47438 * 300.28582 * 14 13 11 43 43 H 1.08999 * 109.46761 * 60.27974 * 14 13 11 44 44 H 1.08994 * 109.47291 * 60.00400 * 17 15 14 45 45 H 1.09004 * 109.47427 * 180.02562 * 17 15 14 46 46 H 1.09005 * 109.47295 * 300.00251 * 17 15 14 47 47 H 1.08993 * 109.46891 * 93.93646 * 19 18 15 48 48 H 1.09003 * 109.46734 * 213.94034 * 19 18 15 49 49 H 1.08999 * 109.46866 * 333.93281 * 19 18 15 50 50 H 0.96995 * 120.00222 * 179.97438 * 23 22 20 51 51 H 1.08000 * 120.02743 * 180.23427 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6095 0.0005 7 6 6.0961 1.8879 -0.0049 8 6 5.2551 2.9851 0.0005 9 6 5.8331 4.3767 0.0000 10 6 6.0287 4.8483 1.4423 11 6 6.6073 6.2399 1.4417 12 8 6.8398 6.7995 0.3912 13 7 6.8654 6.8628 2.6088 14 6 7.4335 8.2131 2.6082 15 6 7.6337 8.6828 4.0505 16 1 8.3813 8.0556 4.5363 17 6 8.1090 10.1370 4.0520 18 7 6.3655 8.5827 4.7772 19 6 5.1968 9.3375 4.3182 20 6 6.2727 7.7837 5.8854 21 1 7.1614 7.5294 6.4438 22 6 5.0362 7.3005 6.2909 23 7 3.9929 7.4123 5.4961 24 14 4.8526 6.4917 7.9647 25 1 5.2248 7.4610 9.0264 26 1 3.4432 6.0652 8.1566 27 1 5.7439 5.3064 8.0420 28 6 3.8850 2.8066 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7885 -0.5728 0.0008 35 1 6.2280 -0.2461 0.0001 36 1 7.1669 2.0294 -0.0094 37 1 5.1506 5.0534 -0.5141 38 1 6.7944 4.3708 -0.5139 39 1 6.7112 4.1716 1.9564 40 1 5.0674 4.8544 1.9561 41 1 6.6790 6.4153 3.4489 42 1 8.3938 8.2032 2.0927 43 1 6.7531 8.8933 2.0958 44 1 7.3615 10.7641 3.5663 45 1 8.2521 10.4715 5.0795 46 1 9.0526 10.2114 3.5113 47 1 4.5918 8.7088 3.6652 48 1 4.6026 9.6457 5.1786 49 1 5.5267 10.2198 3.7697 50 1 3.1290 7.0744 5.7794 51 1 3.2283 3.6641 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725199765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:23 Heat of formation + Delta-G solvation = -45.425442 kcal Electronic energy + Delta-G solvation = -28589.986621 eV Core-core repulsion = 24682.822097 eV Total energy + Delta-G solvation = -3907.164524 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.29563 -39.17829 -37.86872 -36.68056 -33.76321 -33.51951 -32.21291 -32.00196 -30.06397 -29.45854 -29.11451 -26.13274 -26.00068 -24.44537 -23.33220 -22.84550 -22.57803 -20.69752 -19.64720 -19.14837 -17.96297 -16.92510 -16.40680 -16.28879 -16.20136 -16.09531 -15.44988 -15.26481 -14.89767 -14.38995 -14.00191 -13.73142 -13.60314 -13.47096 -13.09563 -13.02867 -12.82219 -12.67659 -12.63923 -12.34806 -12.12216 -11.98104 -11.83376 -11.67953 -11.57350 -11.50671 -11.06906 -10.91714 -10.88501 -10.79321 -10.72440 -10.69778 -10.40957 -10.30653 -9.87018 -9.79043 -9.33775 -8.82577 -8.59786 -8.29660 -8.25654 -6.80888 -5.76525 -3.24567 1.24428 1.39492 3.02266 3.23379 3.34386 3.41483 3.41957 3.64735 3.95298 4.44133 4.60720 4.63422 4.72649 4.84160 4.91763 5.01137 5.12258 5.26164 5.26668 5.32040 5.36607 5.40611 5.45820 5.49655 5.52366 5.62913 5.67066 5.75684 5.83206 5.96689 5.99399 6.09670 6.11034 6.17982 6.21205 6.31216 6.35913 6.38706 6.41795 6.61703 6.70738 6.72651 6.82432 6.92066 7.20901 7.32318 7.39546 7.72331 7.78472 8.28562 8.34950 8.88577 9.19094 9.82084 10.32169 11.26524 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.002790 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.106587 B =10033.788016 C =11772.065677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.316 6.316 4 C 0.130 3.870 5 C -0.217 4.217 6 C -0.080 4.080 7 C -0.154 4.154 8 C -0.036 4.036 9 C -0.063 4.063 10 C -0.134 4.134 11 C 0.510 3.490 12 O -0.567 6.567 13 N -0.701 5.701 14 C 0.108 3.892 15 C 0.158 3.842 16 H 0.067 0.933 17 C -0.158 4.158 18 N -0.594 5.594 19 C 0.164 3.836 20 C -0.262 4.262 21 H 0.066 0.934 22 C 0.007 3.993 23 N -0.901 5.901 24 Si 0.902 3.098 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.283 1.283 28 C -0.147 4.147 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.415 0.585 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.045 0.955 47 H 0.029 0.971 48 H 0.041 0.959 49 H -0.002 1.002 50 H 0.253 0.747 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 -13.468 -10.792 17.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.230 6.230 4 C 0.085 3.915 5 C -0.236 4.236 6 C -0.098 4.098 7 C -0.172 4.172 8 C -0.037 4.037 9 C -0.101 4.101 10 C -0.174 4.174 11 C 0.296 3.704 12 O -0.447 6.447 13 N -0.351 5.351 14 C -0.018 4.018 15 C 0.049 3.951 16 H 0.086 0.914 17 C -0.218 4.218 18 N -0.317 5.317 19 C 0.019 3.981 20 C -0.391 4.391 21 H 0.084 0.916 22 C -0.192 4.192 23 N -0.545 5.545 24 Si 0.732 3.268 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.210 1.210 28 C -0.165 4.165 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.252 0.748 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.047 0.953 48 H 0.060 0.940 49 H 0.016 0.984 50 H 0.063 0.937 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.014 -12.967 -11.464 17.308 hybrid contribution -0.349 -0.960 1.444 1.768 sum -0.364 -13.926 -10.020 17.161 Atomic orbital electron populations 1.21780 0.92770 1.02746 1.03705 1.22756 0.95885 0.82141 1.01230 1.86091 1.19181 1.29095 1.88658 1.18965 0.82147 0.94113 0.96234 1.21174 0.94484 0.97773 1.10127 1.20890 0.94229 0.97194 0.97512 1.20990 0.99851 0.91944 1.04452 1.19764 0.92250 0.95729 0.95912 1.20341 1.02141 0.91413 0.96189 1.21594 1.03372 0.94338 0.98113 1.20505 0.78059 0.87930 0.83886 1.90627 1.54469 1.68035 1.31613 1.45869 1.63039 1.17212 1.08969 1.21903 0.96983 0.83484 0.99477 1.20647 0.90090 0.94547 0.89821 0.91431 1.22172 0.99689 0.98436 1.01486 1.43924 1.06267 1.51485 1.29991 1.20746 0.88365 0.91228 0.97743 1.19158 0.93648 1.24310 1.02006 0.91582 1.25006 0.96702 0.99250 0.98285 1.70062 1.00226 1.49425 1.34835 0.86393 0.76757 0.79279 0.84392 1.21195 1.21717 1.20973 1.20387 0.94830 0.94963 1.06344 0.90468 0.91351 0.91506 0.92209 0.92086 0.85864 0.85950 0.85818 0.90028 0.90085 0.89172 0.88451 0.74842 0.93057 0.92550 0.92971 0.92491 0.93605 0.95307 0.93987 0.98380 0.93659 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.47 5.46 37.16 0.20 0.68 16 3 O -0.32 -3.93 10.14 -19.45 -0.20 -4.13 16 4 C 0.13 1.67 6.69 -39.22 -0.26 1.41 16 5 C -0.22 -2.38 9.04 -39.44 -0.36 -2.73 16 6 C -0.08 -0.84 10.04 -39.61 -0.40 -1.24 16 7 C -0.15 -1.77 9.70 -39.56 -0.38 -2.15 16 8 C -0.04 -0.47 5.13 -104.65 -0.54 -1.00 16 9 C -0.06 -0.86 4.63 -27.89 -0.13 -0.99 16 10 C -0.13 -2.00 5.68 -27.88 -0.16 -2.16 16 11 C 0.51 9.37 7.83 -10.98 -0.09 9.29 16 12 O -0.57 -11.85 15.98 5.56 0.09 -11.76 16 13 N -0.70 -13.35 5.39 -60.30 -0.32 -13.67 16 14 C 0.11 2.02 4.97 -4.05 -0.02 2.00 16 15 C 0.16 3.02 2.87 -67.93 -0.19 2.82 16 16 H 0.07 1.28 7.87 -51.92 -0.41 0.87 16 17 C -0.16 -2.63 9.18 37.15 0.34 -2.29 16 18 N -0.59 -13.69 2.29 -173.49 -0.40 -14.08 16 19 C 0.16 3.90 8.11 59.85 0.49 4.39 16 20 C -0.26 -6.61 9.32 -15.06 -0.14 -6.75 16 21 H 0.07 1.64 7.82 -52.49 -0.41 1.23 16 22 C 0.01 0.17 5.12 -17.43 -0.09 0.08 16 23 N -0.90 -24.66 10.65 55.49 0.59 -24.07 16 24 Si 0.90 20.85 29.57 -169.99 -5.03 15.83 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C -0.15 -1.98 9.64 -39.43 -0.38 -2.36 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.43 7.66 -51.93 -0.40 0.04 16 33 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 34 H 0.12 1.07 6.30 -52.49 -0.33 0.74 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 37 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 38 H 0.08 1.08 8.04 -51.93 -0.42 0.66 16 39 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 40 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.41 8.33 7.89 -40.82 -0.32 8.01 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 1.14 7.84 -51.93 -0.41 0.74 16 44 H 0.05 0.88 6.66 -51.93 -0.35 0.53 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.03 0.75 7.41 -51.93 -0.38 0.37 16 48 H 0.04 1.09 7.23 -51.93 -0.38 0.71 16 49 H 0.00 -0.05 6.43 -51.93 -0.33 -0.38 16 50 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 51 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 413.50 15.07 6.23 6.23 Total: -1.00 -29.85 413.50 -9.49 -39.35 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -8.74 Total: 7.99 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.72 Total: -1.69 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.13 Total: -51.83 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.11 Total: -15.88 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -29.85 -9.49 -39.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725199765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.080 kcal (2) G-P(sol) polarization free energy of solvation -29.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds