Wall clock time and date at job start Tue Mar 31 2020 19:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.46793 * 2 1 4 4 C 1.35906 * 116.99617 * 179.97438 * 3 2 1 5 5 C 1.38746 * 120.05681 * 0.02562 * 4 3 2 6 6 C 1.38122 * 119.94521 * 179.97438 * 5 4 3 7 7 C 1.38289 * 120.05290 * 359.73874 * 6 5 4 8 8 C 1.38244 * 120.11467 * 0.51873 * 7 6 5 9 9 C 1.50694 * 119.97663 * 179.76058 * 8 7 6 10 10 C 1.53000 * 109.47545 * 269.72456 * 9 8 7 11 11 C 1.50700 * 109.47181 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99869 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99577 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99726 * 179.72317 * 13 11 10 15 15 C 1.52994 * 109.47295 * 180.27793 * 14 13 11 16 16 H 1.09008 * 109.46772 * 65.00253 * 15 14 13 17 17 C 1.52993 * 109.47273 * 185.00249 * 15 14 13 18 18 N 1.46505 * 109.47151 * 305.00666 * 15 14 13 19 19 C 1.46502 * 119.99666 * 299.99650 * 18 15 14 20 20 C 1.36936 * 119.99844 * 119.99815 * 18 15 14 21 21 H 1.07999 * 120.00119 * 23.12014 * 20 18 15 22 22 C 1.38809 * 119.99492 * 203.11811 * 20 18 15 23 23 N 1.31624 * 120.00472 * 11.68654 * 22 20 18 24 24 Si 1.86801 * 119.99923 * 191.69093 * 22 20 18 25 25 H 1.48499 * 109.47315 * 59.99693 * 24 22 20 26 26 H 1.48499 * 109.47538 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46828 * 299.99766 * 24 22 20 28 28 C 1.38174 * 120.05123 * 359.48419 * 8 7 6 29 29 H 1.08998 * 109.46905 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47465 * 300.00070 * 1 2 3 31 31 H 1.09001 * 109.46839 * 60.00222 * 1 2 3 32 32 H 1.08992 * 109.47009 * 240.00016 * 2 1 3 33 33 H 1.09001 * 109.46839 * 119.99778 * 2 1 3 34 34 H 1.08000 * 120.02673 * 359.95411 * 5 4 3 35 35 H 1.07997 * 119.97301 * 180.02562 * 6 5 4 36 36 H 1.08006 * 119.94452 * 180.27709 * 7 6 5 37 37 H 1.08999 * 109.47080 * 149.71886 * 9 8 7 38 38 H 1.09005 * 109.47120 * 29.72594 * 9 8 7 39 39 H 1.09001 * 109.46964 * 59.99328 * 10 9 8 40 40 H 1.09000 * 109.46717 * 299.99822 * 10 9 8 41 41 H 0.96992 * 119.99731 * 0.02562 * 13 11 10 42 42 H 1.09001 * 109.47438 * 300.28582 * 14 13 11 43 43 H 1.08999 * 109.46761 * 60.27974 * 14 13 11 44 44 H 1.08994 * 109.47291 * 60.00400 * 17 15 14 45 45 H 1.09004 * 109.47427 * 180.02562 * 17 15 14 46 46 H 1.09005 * 109.47295 * 300.00251 * 17 15 14 47 47 H 1.08993 * 109.46891 * 93.93646 * 19 18 15 48 48 H 1.09003 * 109.46734 * 213.94034 * 19 18 15 49 49 H 1.08999 * 109.46866 * 333.93281 * 19 18 15 50 50 H 0.96995 * 120.00222 * 179.97438 * 23 22 20 51 51 H 1.08000 * 120.02743 * 180.23427 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 4.1999 0.4258 0.0005 6 6 5.5689 0.6095 0.0005 7 6 6.0961 1.8879 -0.0049 8 6 5.2551 2.9851 0.0005 9 6 5.8331 4.3767 0.0000 10 6 6.0287 4.8483 1.4423 11 6 6.6073 6.2399 1.4417 12 8 6.8398 6.7995 0.3912 13 7 6.8654 6.8628 2.6088 14 6 7.4335 8.2131 2.6082 15 6 7.6337 8.6828 4.0505 16 1 8.3813 8.0556 4.5363 17 6 8.1090 10.1370 4.0520 18 7 6.3655 8.5827 4.7772 19 6 5.1968 9.3375 4.3182 20 6 6.2727 7.7837 5.8854 21 1 7.1614 7.5294 6.4438 22 6 5.0362 7.3005 6.2909 23 7 3.9929 7.4123 5.4961 24 14 4.8526 6.4917 7.9647 25 1 5.2248 7.4610 9.0264 26 1 3.4432 6.0652 8.1566 27 1 5.7439 5.3064 8.0420 28 6 3.8850 2.8066 0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7885 -0.5728 0.0008 35 1 6.2280 -0.2461 0.0001 36 1 7.1669 2.0294 -0.0094 37 1 5.1506 5.0534 -0.5141 38 1 6.7944 4.3708 -0.5139 39 1 6.7112 4.1716 1.9564 40 1 5.0674 4.8544 1.9561 41 1 6.6790 6.4153 3.4489 42 1 8.3938 8.2032 2.0927 43 1 6.7531 8.8933 2.0958 44 1 7.3615 10.7641 3.5663 45 1 8.2521 10.4715 5.0795 46 1 9.0526 10.2114 3.5113 47 1 4.5918 8.7088 3.6652 48 1 4.6026 9.6457 5.1786 49 1 5.5267 10.2198 3.7697 50 1 3.1290 7.0744 5.7794 51 1 3.2283 3.6641 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725199765.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:22 Heat of formation + Delta-G solvation = -61.112478 kcal Electronic energy + Delta-G solvation = -28590.666862 eV Core-core repulsion = 24682.822097 eV Total energy + Delta-G solvation = -3907.844764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.20370 -40.62686 -38.82475 -38.32498 -35.33697 -34.75000 -33.71357 -32.89687 -31.28732 -30.83128 -30.21701 -27.98843 -27.41714 -25.54412 -24.81834 -24.03032 -23.47335 -21.62738 -21.16935 -20.72130 -18.87768 -18.80947 -17.80834 -17.18780 -17.09223 -17.04481 -16.98056 -16.81405 -16.35250 -15.83043 -15.34318 -14.99289 -14.66927 -14.51773 -14.43234 -14.29298 -14.17415 -13.91258 -13.68051 -13.53562 -13.40270 -13.36384 -13.12899 -12.79682 -12.62941 -12.57098 -12.55533 -12.46872 -12.43339 -12.26257 -12.10777 -11.99394 -11.72722 -11.66194 -11.62212 -11.46395 -10.83088 -10.57611 -9.85781 -9.78360 -9.14828 -8.74120 -7.75405 -5.24524 0.33202 0.49436 1.50499 1.53370 1.58300 1.74406 2.24755 2.44797 2.55083 2.81597 3.38426 3.65523 3.72345 3.86204 4.00641 4.03998 4.05476 4.10424 4.14120 4.19753 4.29619 4.35859 4.42527 4.45853 4.47492 4.59582 4.63788 4.66833 4.74512 4.82523 4.85546 4.89183 4.91556 4.97546 5.06769 5.10293 5.16647 5.19734 5.29484 5.31930 5.36156 5.49055 5.50462 5.66573 5.68353 5.73157 5.76941 5.85827 6.37891 6.48611 6.74012 7.20541 7.36417 7.92076 8.38147 9.25889 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.010102 B = 0.002790 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2771.106587 B =10033.788016 C =11772.065677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.340 6.340 4 C 0.116 3.884 5 C -0.215 4.215 6 C -0.077 4.077 7 C -0.158 4.158 8 C -0.045 4.045 9 C -0.053 4.053 10 C -0.125 4.125 11 C 0.508 3.492 12 O -0.593 6.593 13 N -0.705 5.705 14 C 0.114 3.886 15 C 0.156 3.844 16 H 0.074 0.926 17 C -0.149 4.149 18 N -0.602 5.602 19 C 0.182 3.818 20 C -0.259 4.259 21 H 0.073 0.927 22 C -0.042 4.042 23 N -0.930 5.930 24 Si 0.959 3.041 25 H -0.285 1.285 26 H -0.303 1.303 27 H -0.273 1.273 28 C -0.172 4.172 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.149 0.851 35 H 0.155 0.845 36 H 0.142 0.858 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.410 0.590 42 H 0.070 0.930 43 H 0.038 0.962 44 H 0.046 0.954 45 H 0.053 0.947 46 H 0.077 0.923 47 H -0.001 1.001 48 H 0.014 0.986 49 H 0.021 0.979 50 H 0.244 0.756 51 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.022 -15.386 -10.695 18.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.255 6.255 4 C 0.071 3.929 5 C -0.233 4.233 6 C -0.094 4.094 7 C -0.176 4.176 8 C -0.046 4.046 9 C -0.091 4.091 10 C -0.164 4.164 11 C 0.295 3.705 12 O -0.475 6.475 13 N -0.354 5.354 14 C -0.013 4.013 15 C 0.049 3.951 16 H 0.092 0.908 17 C -0.209 4.209 18 N -0.325 5.325 19 C 0.037 3.963 20 C -0.389 4.389 21 H 0.091 0.909 22 C -0.238 4.238 23 N -0.576 5.576 24 Si 0.788 3.212 25 H -0.212 1.212 26 H -0.229 1.229 27 H -0.199 1.199 28 C -0.191 4.191 29 H 0.122 0.878 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.166 0.834 35 H 0.173 0.827 36 H 0.160 0.840 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.131 0.869 40 H 0.105 0.895 41 H 0.246 0.754 42 H 0.088 0.912 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.017 0.983 48 H 0.033 0.967 49 H 0.040 0.960 50 H 0.054 0.946 51 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.855 -14.882 -11.368 18.819 hybrid contribution -0.893 -0.367 1.376 1.681 sum 0.962 -15.249 -9.992 18.256 Atomic orbital electron populations 1.21822 0.91826 1.04219 1.02953 1.23062 0.96724 0.80716 1.02376 1.86069 1.19172 1.31537 1.88720 1.19132 0.82745 0.94384 0.96670 1.21499 0.94654 0.98302 1.08894 1.21290 0.94469 0.97807 0.95861 1.21251 1.00621 0.91897 1.03868 1.19677 0.92154 0.95625 0.97097 1.20211 1.01997 0.91860 0.95051 1.21561 1.02920 0.92690 0.99258 1.21039 0.77345 0.88898 0.83181 1.90608 1.55623 1.68941 1.32361 1.45967 1.63137 1.17354 1.08946 1.21838 0.97285 0.83071 0.99065 1.20843 0.88316 0.96482 0.89447 0.90753 1.22064 1.00988 0.96026 1.01785 1.44057 1.07250 1.51084 1.30115 1.20405 0.88287 0.91511 0.96093 1.19452 0.93666 1.23334 1.02440 0.90902 1.25625 0.96700 1.00479 1.00960 1.70230 1.00234 1.50963 1.36151 0.85476 0.75977 0.78670 0.81034 1.21195 1.22939 1.19870 1.20441 0.95265 0.95310 1.08088 0.87839 0.92423 0.91941 0.90650 0.91165 0.83363 0.82713 0.83997 0.91750 0.89538 0.86950 0.89535 0.75410 0.91231 0.94388 0.93457 0.92778 0.90452 0.98272 0.96712 0.96036 0.94623 0.86565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 10.28 71.98 0.74 -1.22 16 2 C 0.05 0.73 5.46 71.98 0.39 1.12 16 3 O -0.34 -8.53 10.14 -92.50 -0.94 -9.46 16 4 C 0.12 2.95 6.69 22.50 0.15 3.10 16 5 C -0.22 -4.28 9.04 22.36 0.20 -4.07 16 6 C -0.08 -1.39 10.04 22.25 0.22 -1.17 16 7 C -0.16 -3.33 9.70 22.28 0.22 -3.11 16 8 C -0.05 -1.16 5.13 -19.88 -0.10 -1.26 16 9 C -0.05 -1.48 4.63 29.85 0.14 -1.34 16 10 C -0.12 -3.74 5.68 29.85 0.17 -3.57 16 11 C 0.51 18.74 7.83 87.66 0.69 19.42 16 12 O -0.59 -24.91 15.98 -3.03 -0.05 -24.96 16 13 N -0.70 -26.75 5.39 -463.07 -2.49 -29.24 16 14 C 0.11 4.16 4.97 86.38 0.43 4.59 16 15 C 0.16 5.74 2.87 44.99 0.13 5.87 16 16 H 0.07 2.65 7.87 -2.38 -0.02 2.63 16 17 C -0.15 -4.62 9.18 71.98 0.66 -3.96 16 18 N -0.60 -27.54 2.29 -702.79 -1.61 -29.14 16 19 C 0.18 8.82 8.11 127.77 1.04 9.85 16 20 C -0.26 -12.93 9.32 84.03 0.78 -12.14 16 21 H 0.07 3.51 7.82 -2.91 -0.02 3.49 16 22 C -0.04 -2.18 5.12 84.86 0.43 -1.75 16 23 N -0.93 -52.12 10.65 21.65 0.23 -51.89 16 24 Si 0.96 42.96 29.57 68.60 2.03 44.98 16 25 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C -0.17 -4.83 9.64 22.37 0.22 -4.61 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.95 7.66 -2.39 -0.02 0.93 16 33 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 34 H 0.15 2.11 6.30 -2.91 -0.02 2.09 16 35 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 37 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 38 H 0.09 2.27 8.04 -2.38 -0.02 2.25 16 39 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.41 16.45 7.89 -92.71 -0.73 15.72 16 42 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.04 1.53 7.84 -2.39 -0.02 1.51 16 44 H 0.05 1.50 6.66 -2.39 -0.02 1.49 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 47 H 0.00 -0.06 7.41 -2.39 -0.02 -0.07 16 48 H 0.01 0.76 7.23 -2.39 -0.02 0.74 16 49 H 0.02 0.91 6.43 -2.39 -0.02 0.90 16 50 H 0.24 13.68 8.31 -92.71 -0.77 12.91 16 51 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -65.06 413.50 3.85 -61.21 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: 0.17 Total: 32.74 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: 6.51 Total: 5.76 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -3.87 Total: -110.28 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.99 Total: -34.42 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -65.06 3.85 -61.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725199765.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.101 kcal (2) G-P(sol) polarization free energy of solvation -65.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds