Wall clock time and date at job start Tue Mar 31 2020 18:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46916 * 2 1 4 4 C 1.36940 * 119.99985 * 264.63137 * 3 2 1 5 5 H 1.07997 * 120.00068 * 187.00717 * 4 3 2 6 6 C 1.38806 * 120.00049 * 7.00720 * 4 3 2 7 7 N 1.31627 * 119.99920 * 31.45522 * 6 4 3 8 8 Si 1.86799 * 120.00263 * 211.46066 * 6 4 3 9 9 H 1.48498 * 109.47553 * 94.99497 * 8 6 4 10 10 H 1.48501 * 109.47086 * 214.99825 * 8 6 4 11 11 H 1.48507 * 109.46907 * 334.99512 * 8 6 4 12 12 C 1.46498 * 120.00240 * 84.62628 * 3 2 1 13 13 C 1.53005 * 109.47498 * 270.00453 * 12 3 2 14 14 N 1.46500 * 109.47113 * 180.02562 * 13 12 3 15 15 C 1.34781 * 119.99622 * 179.97438 * 14 13 12 16 16 O 1.21275 * 120.00066 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99523 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47295 * 67.19509 * 17 15 14 19 19 C 1.53005 * 109.47416 * 307.18898 * 17 15 14 20 20 C 1.50701 * 109.46864 * 187.19287 * 17 15 14 21 21 C 1.38166 * 120.02882 * 240.25325 * 20 17 15 22 22 C 1.38250 * 120.05643 * 179.73939 * 21 20 17 23 23 C 1.38286 * 120.11090 * 0.28057 * 22 21 20 24 24 C 1.38119 * 120.05460 * 359.97438 * 23 22 21 25 25 C 1.38718 * 120.02904 * 60.52495 * 20 17 15 26 26 O 1.35898 * 120.05504 * 359.97438 * 25 20 17 27 27 C 1.42900 * 117.00170 * 180.25118 * 26 25 20 28 28 H 1.09005 * 109.47470 * 299.99945 * 1 2 3 29 29 H 1.08997 * 109.47161 * 60.00668 * 1 2 3 30 30 H 1.09007 * 109.46598 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47585 * 239.99993 * 2 1 3 32 32 H 1.09003 * 109.47591 * 119.99364 * 2 1 3 33 33 H 0.96996 * 119.99796 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47392 * 150.00158 * 12 3 2 35 35 H 1.09002 * 109.47420 * 30.00506 * 12 3 2 36 36 H 1.08994 * 109.46663 * 59.99705 * 13 12 3 37 37 H 1.09005 * 109.46364 * 299.99829 * 13 12 3 38 38 H 0.97000 * 119.99854 * 0.02562 * 14 13 12 39 39 H 1.09006 * 109.47337 * 179.97438 * 18 17 15 40 40 H 1.09007 * 109.46713 * 299.99440 * 18 17 15 41 41 H 1.08999 * 109.47304 * 59.99459 * 18 17 15 42 42 H 1.08999 * 109.46930 * 300.00310 * 19 17 15 43 43 H 1.08998 * 109.46578 * 60.00356 * 19 17 15 44 44 H 1.08994 * 109.47039 * 180.02562 * 19 17 15 45 45 H 1.08001 * 119.97122 * 0.02562 * 21 20 17 46 46 H 1.07999 * 119.94234 * 180.26003 * 22 21 20 47 47 H 1.07997 * 119.97324 * 179.97438 * 23 22 21 48 48 H 1.08008 * 120.02688 * 179.97438 * 24 23 22 49 49 H 1.08990 * 109.47572 * 180.02562 * 27 26 25 50 50 H 1.09003 * 109.47071 * 300.00554 * 27 26 25 51 51 H 1.09002 * 109.47018 * 59.99630 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3511 1.9898 -1.1807 5 1 2.8164 2.9644 -1.1736 6 6 2.0904 1.3541 -2.3868 7 7 1.0519 0.5529 -2.4974 8 14 3.2132 1.6355 -3.8529 9 1 4.2318 0.5564 -3.9107 10 1 2.4093 1.6248 -5.1014 11 1 3.8913 2.9492 -3.7120 12 6 2.1504 2.1115 1.2631 13 6 0.8423 2.8444 1.5679 14 7 0.9748 3.5751 2.8307 15 6 -0.0599 4.2988 3.3022 16 8 -1.1007 4.3447 2.6813 17 6 0.0761 5.0500 4.6015 18 6 1.0899 6.1832 4.4317 19 6 0.5576 4.0944 5.6951 20 6 -1.2608 5.6262 4.9909 21 6 -1.4099 6.9925 5.1329 22 6 -2.6375 7.5221 5.4848 23 6 -3.7175 6.6860 5.7012 24 6 -3.5723 5.3192 5.5657 25 6 -2.3413 4.7850 5.2125 26 8 -2.1960 3.4405 5.0783 27 6 -3.3526 2.6359 5.3166 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 0.8695 0.1090 -3.3403 34 1 2.9617 2.8349 1.1815 35 1 2.3694 1.4094 2.0676 36 1 0.0312 2.1209 1.6495 37 1 0.6234 3.5466 0.7634 38 1 1.8073 3.5387 3.3271 39 1 1.1880 6.7268 5.3714 40 1 2.0570 5.7663 4.1501 41 1 0.7469 6.8639 3.6526 42 1 -0.1648 3.2871 5.8160 43 1 1.5246 3.6776 5.4135 44 1 0.6555 4.6377 6.6349 45 1 -0.5680 7.6475 4.9643 46 1 -2.7531 8.5906 5.5913 47 1 -4.6753 7.1021 5.9765 48 1 -4.4160 4.6666 5.7352 49 1 -3.0994 1.5851 5.1765 50 1 -3.7000 2.7925 6.3379 51 1 -4.1407 2.9165 4.6178 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731816498.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:47 Heat of formation + Delta-G solvation = -20.753667 kcal Electronic energy + Delta-G solvation = -30113.902864 eV Core-core repulsion = 26207.808189 eV Total energy + Delta-G solvation = -3906.094675 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.84924 -39.09829 -37.47238 -36.38991 -35.18091 -34.13075 -31.37760 -30.36453 -30.01401 -29.47809 -27.78118 -27.41107 -26.97367 -24.33515 -23.72325 -22.28107 -21.88575 -21.14884 -20.35717 -19.23212 -18.12913 -16.91046 -16.71715 -16.09780 -15.90445 -15.63676 -15.16451 -14.86468 -14.75095 -14.45279 -14.09898 -13.88986 -13.81005 -13.62342 -13.34448 -12.94207 -12.66338 -12.40662 -12.30505 -12.10288 -12.04720 -11.98488 -11.85322 -11.82864 -11.58505 -11.39614 -11.18005 -11.07893 -11.00437 -10.74577 -10.63288 -10.48210 -10.31329 -9.88891 -9.72878 -9.38447 -9.26508 -8.89605 -8.44161 -8.32218 -8.12917 -6.95497 -5.80472 -3.04611 1.25330 1.44044 3.10416 3.29428 3.41517 3.48080 3.51107 3.53582 3.86695 4.42063 4.54282 4.67625 4.82555 4.90947 4.97164 5.03474 5.07420 5.13130 5.25248 5.29983 5.37807 5.45829 5.47066 5.56389 5.58552 5.62943 5.68605 5.75332 5.88410 5.91281 5.98780 6.04601 6.15445 6.30738 6.31582 6.37277 6.47193 6.55229 6.70784 6.73951 6.80686 6.93057 7.01038 7.11849 7.17820 7.39888 7.64808 7.77380 7.97761 8.13290 8.33203 8.71551 9.22621 9.86335 10.31339 11.24806 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017596 B = 0.002797 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.846761 B =10007.994368 C =10484.673948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.168 3.832 3 N -0.590 5.590 4 C -0.259 4.259 5 H 0.076 0.924 6 C 0.004 3.996 7 N -0.885 5.885 8 Si 0.889 3.111 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.280 1.280 12 C 0.144 3.856 13 C 0.093 3.907 14 N -0.726 5.726 15 C 0.524 3.476 16 O -0.530 6.530 17 C -0.033 4.033 18 C -0.143 4.143 19 C -0.140 4.140 20 C -0.090 4.090 21 C -0.080 4.080 22 C -0.163 4.163 23 C -0.083 4.083 24 C -0.213 4.213 25 C 0.158 3.842 26 O -0.302 6.302 27 C 0.028 3.972 28 H 0.016 0.984 29 H 0.094 0.906 30 H 0.019 0.981 31 H 0.080 0.920 32 H 0.006 0.994 33 H 0.252 0.748 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.392 0.608 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.132 0.868 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.125 0.875 49 H 0.098 0.902 50 H 0.051 0.949 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.797 9.017 21.276 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 N -0.312 5.312 4 C -0.388 4.388 5 H 0.093 0.907 6 C -0.194 4.194 7 N -0.529 5.529 8 Si 0.718 3.282 9 H -0.216 1.216 10 H -0.221 1.221 11 H -0.206 1.206 12 C 0.016 3.984 13 C -0.032 4.032 14 N -0.377 5.377 15 C 0.309 3.691 16 O -0.406 6.406 17 C -0.037 4.037 18 C -0.200 4.200 19 C -0.197 4.197 20 C -0.091 4.091 21 C -0.098 4.098 22 C -0.181 4.181 23 C -0.102 4.102 24 C -0.232 4.232 25 C 0.112 3.888 26 O -0.214 6.214 27 C -0.067 4.067 28 H 0.035 0.965 29 H 0.112 0.888 30 H 0.038 0.962 31 H 0.098 0.902 32 H 0.025 0.975 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.225 0.775 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.149 0.851 46 H 0.139 0.861 47 H 0.139 0.861 48 H 0.143 0.857 49 H 0.116 0.884 50 H 0.069 0.931 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.425 8.793 20.573 23.022 hybrid contribution 0.312 0.102 -0.621 0.702 sum -5.113 8.895 19.952 22.436 Atomic orbital electron populations 1.22452 0.99114 0.98318 1.01686 1.20741 0.92606 0.84347 0.98038 1.44271 1.75602 1.09986 1.01314 1.19248 1.33059 1.03033 0.83436 0.90654 1.24674 0.97365 1.00298 0.97103 1.70228 1.23513 1.34133 1.25055 0.86458 0.81458 0.77785 0.82454 1.21640 1.22125 1.20569 1.20934 0.93831 0.94408 0.89228 1.22627 1.01758 0.95418 0.83444 1.46129 1.15638 1.50489 1.25471 1.20149 0.83787 0.79166 0.86043 1.90686 1.28175 1.62468 1.59268 1.19556 0.93509 0.96214 0.94401 1.21951 0.98009 0.97494 1.02593 1.21900 1.01554 0.99210 0.97065 1.18721 0.93108 0.92445 1.04867 1.20963 0.97873 0.93344 0.97577 1.20959 0.93119 0.99632 1.04407 1.20879 0.98583 0.92726 0.97967 1.21177 0.96664 0.96623 1.08717 1.18743 0.93238 0.83021 0.93783 1.86142 1.36075 1.14574 1.84614 1.23026 0.88188 0.95339 1.00154 0.96484 0.88782 0.96205 0.90204 0.97535 0.93735 0.93274 0.93982 0.91824 0.91815 0.77506 0.91225 0.91522 0.91688 0.90711 0.91943 0.91893 0.85073 0.86094 0.86144 0.85688 0.88366 0.93058 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 9.63 37.16 0.36 -3.34 16 2 C 0.17 4.03 5.65 -4.04 -0.02 4.01 16 3 N -0.59 -14.41 2.53 -173.24 -0.44 -14.85 16 4 C -0.26 -6.98 9.65 -15.06 -0.15 -7.13 16 5 H 0.08 2.01 7.99 -52.49 -0.42 1.59 16 6 C 0.00 0.11 4.72 -17.43 -0.08 0.03 16 7 N -0.89 -24.89 8.91 55.49 0.49 -24.40 16 8 Si 0.89 21.51 29.65 -169.99 -5.04 16.47 16 9 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.14 2.85 5.82 -4.04 -0.02 2.83 16 13 C 0.09 1.84 5.89 -4.04 -0.02 1.82 16 14 N -0.73 -11.47 5.40 -60.29 -0.33 -11.79 16 15 C 0.52 8.78 5.72 -10.99 -0.06 8.72 16 16 O -0.53 -11.33 14.94 -7.00 -0.10 -11.43 16 17 C -0.03 -0.42 0.63 -156.81 -0.10 -0.52 16 18 C -0.14 -1.42 7.11 37.16 0.26 -1.15 16 19 C -0.14 -1.47 8.09 37.16 0.30 -1.17 16 20 C -0.09 -1.21 4.31 -104.47 -0.45 -1.66 16 21 C -0.08 -0.91 8.97 -39.60 -0.36 -1.27 16 22 C -0.16 -1.71 10.04 -39.56 -0.40 -2.11 16 23 C -0.08 -0.88 10.04 -39.61 -0.40 -1.28 16 24 C -0.21 -2.54 9.04 -39.43 -0.36 -2.90 16 25 C 0.16 2.20 5.73 -39.21 -0.22 1.97 16 26 O -0.30 -4.26 6.80 -31.98 -0.22 -4.48 16 27 C 0.03 0.29 9.81 101.05 0.99 1.28 16 28 H 0.02 0.37 5.99 -51.93 -0.31 0.06 16 29 H 0.09 2.55 6.20 -51.93 -0.32 2.23 16 30 H 0.02 0.42 8.14 -51.92 -0.42 -0.01 16 31 H 0.08 2.12 6.02 -51.93 -0.31 1.80 16 32 H 0.01 0.14 7.97 -51.93 -0.41 -0.27 16 33 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.05 0.92 8.03 -51.93 -0.42 0.51 16 35 H 0.04 0.75 7.95 -51.93 -0.41 0.34 16 36 H 0.06 1.41 5.95 -51.93 -0.31 1.10 16 37 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.39 4.89 7.43 -40.82 -0.30 4.59 16 39 H 0.07 0.54 7.53 -51.93 -0.39 0.15 16 40 H 0.07 0.59 8.10 -51.92 -0.42 0.17 16 41 H 0.06 0.69 7.50 -51.93 -0.39 0.31 16 42 H 0.07 0.90 6.10 -51.93 -0.32 0.58 16 43 H 0.06 0.56 7.20 -51.93 -0.37 0.19 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.13 1.22 5.89 -52.49 -0.31 0.91 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 48 H 0.13 1.23 6.30 -52.48 -0.33 0.90 16 49 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 51 H 0.05 0.57 7.66 -51.93 -0.40 0.18 16 LS Contribution 394.86 15.07 5.95 5.95 Total: -1.00 -32.88 394.86 -8.63 -41.51 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.22 Total: 4.91 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -0.73 Total: -1.87 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.27 Total: -51.05 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.32 Total: -15.91 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.04 Total: 16.47 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.88 -8.63 -41.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731816498.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.757 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds