Wall clock time and date at job start Tue Mar 31 2020 19:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47631 * 2 1 4 4 C 1.35652 * 117.00366 * 180.02562 * 3 2 1 5 5 C 1.38704 * 120.14661 * 359.97244 * 4 3 2 6 6 C 1.38060 * 120.08366 * 180.02562 * 5 4 3 7 7 C 1.38552 * 120.38766 * 0.02562 * 6 5 4 8 8 C 1.37790 * 120.29952 * 0.02562 * 7 6 5 9 9 C 1.39698 * 119.90928 * 359.97438 * 8 7 6 10 10 C 1.47538 * 120.19174 * 180.02562 * 9 8 7 11 11 O 1.21591 * 120.00253 * 179.97438 * 10 9 8 12 12 N 1.34773 * 119.99960 * 0.02562 * 10 9 8 13 13 C 1.46503 * 120.00104 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47184 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47162 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47290 * 179.97438 * 15 14 13 17 17 C 1.36934 * 120.00432 * 270.00413 * 16 15 14 18 18 H 1.08001 * 120.00326 * 141.91226 * 17 16 15 19 19 C 1.38814 * 119.99932 * 321.91406 * 17 16 15 20 20 N 1.31624 * 119.99595 * 338.45667 * 19 17 16 21 21 Si 1.86800 * 120.00205 * 158.45515 * 19 17 16 22 22 H 1.48503 * 109.46805 * 90.00072 * 21 19 17 23 23 H 1.48498 * 109.47055 * 209.99816 * 21 19 17 24 24 H 1.48495 * 109.46919 * 329.99813 * 21 19 17 25 25 C 1.46501 * 119.99790 * 90.00243 * 16 15 14 26 26 C 1.53002 * 109.47214 * 122.24257 * 25 16 15 27 27 C 1.53001 * 109.47182 * 242.24250 * 25 16 15 28 28 H 1.08998 * 109.47182 * 59.99961 * 1 2 3 29 29 H 1.09004 * 109.47413 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46982 * 300.00141 * 1 2 3 31 31 H 1.09009 * 109.46874 * 239.99487 * 2 1 3 32 32 H 1.09008 * 109.47044 * 120.00048 * 2 1 3 33 33 H 1.07999 * 119.96099 * 0.02988 * 5 4 3 34 34 H 1.07998 * 119.80900 * 180.28153 * 6 5 4 35 35 H 1.07997 * 119.84996 * 180.02562 * 7 6 5 36 36 H 1.08005 * 120.04041 * 179.97438 * 8 7 6 37 37 H 0.97000 * 120.00197 * 359.97438 * 12 10 9 38 38 H 1.09007 * 109.47076 * 300.00384 * 13 12 10 39 39 H 1.08997 * 109.46837 * 60.00089 * 13 12 10 40 40 H 1.08993 * 109.47355 * 300.00278 * 14 13 12 41 41 H 1.09011 * 109.47175 * 60.00317 * 14 13 12 42 42 H 1.09000 * 109.47447 * 300.00077 * 15 14 13 43 43 H 1.09004 * 109.47075 * 60.00053 * 15 14 13 44 44 H 0.97003 * 119.99616 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.47159 * 2.24462 * 25 16 15 46 46 H 1.08994 * 109.47245 * 65.39827 * 26 25 16 47 47 H 1.08996 * 109.47074 * 185.40575 * 26 25 16 48 48 H 1.09003 * 109.46690 * 305.40424 * 26 25 16 49 49 H 1.09001 * 109.47141 * 60.43826 * 27 25 16 50 50 H 1.09002 * 109.47094 * 180.43846 * 27 25 16 51 51 H 1.08996 * 109.46641 * 300.43449 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3513 1.5249 -0.0005 5 6 4.1990 0.4270 -0.0005 6 6 5.5675 0.6094 -0.0005 7 6 6.1044 1.8867 0.0000 8 6 5.2770 2.9885 0.0010 9 6 3.8904 2.8184 0.0010 10 6 2.9987 3.9938 0.0015 11 8 1.7923 3.8418 0.0011 12 7 3.5213 5.2361 0.0014 13 6 2.6358 6.4033 0.0014 14 6 3.4768 7.6814 0.0007 15 6 2.5521 8.9003 -0.0001 16 7 3.3574 10.1242 -0.0001 17 6 3.7334 10.6965 1.1857 18 1 4.7141 11.1376 1.2854 19 6 2.8539 10.7098 2.2596 20 7 1.5607 10.5781 2.0528 21 14 3.5058 10.9146 3.9982 22 1 3.5557 12.3586 4.3411 23 1 2.6085 10.2107 4.9493 24 1 4.8711 10.3373 4.0861 25 6 3.7604 10.7357 -1.2689 26 6 3.2476 12.1761 -1.3264 27 6 5.2867 10.7331 -1.3742 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5140 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.7881 -0.5717 -0.0005 34 1 6.2234 -0.2486 -0.0051 35 1 7.1762 2.0193 -0.0005 36 1 5.7000 3.9823 0.0018 37 1 4.4836 5.3575 0.0014 38 1 2.0068 6.3821 -0.8886 39 1 2.0069 6.3822 0.8914 40 1 4.1061 7.7028 0.8903 41 1 4.1054 7.7023 -0.8897 42 1 1.9231 8.8788 -0.8900 43 1 1.9231 8.8797 0.8900 44 1 0.9462 10.5877 2.8032 45 1 3.3381 10.1664 -2.0970 46 1 3.7428 12.7690 -0.5575 47 1 3.4635 12.5997 -2.3073 48 1 2.1711 12.1856 -1.1555 49 1 5.6515 9.7065 -1.3411 50 1 5.5868 11.1952 -2.3148 51 1 5.7092 11.2959 -0.5419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732015300.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:27 Heat of formation + Delta-G solvation = -39.667520 kcal Electronic energy + Delta-G solvation = -28709.685748 eV Core-core repulsion = 24802.770907 eV Total energy + Delta-G solvation = -3906.914841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.66707 -38.92195 -37.56313 -36.71332 -34.85946 -32.53182 -32.22892 -31.88968 -30.84842 -29.76745 -28.63512 -26.15713 -25.45786 -24.41288 -23.81744 -22.60712 -21.85625 -20.80211 -20.19172 -19.47609 -18.62010 -17.19375 -16.46447 -16.34348 -16.09029 -15.31941 -15.15278 -15.14562 -14.87789 -14.70811 -14.09068 -14.02425 -13.59996 -13.54862 -13.25443 -13.10388 -12.81559 -12.78881 -12.39909 -12.22161 -12.19602 -11.86808 -11.62795 -11.45306 -11.38301 -11.28205 -11.24636 -10.99289 -10.92216 -10.70819 -10.58535 -10.39247 -10.16872 -9.90936 -9.62891 -9.52827 -9.43167 -9.31375 -8.73040 -8.42370 -8.41105 -6.49810 -5.73710 -3.31398 0.69416 1.15358 2.94595 2.96887 3.36618 3.41753 3.46243 3.48004 3.77178 4.45848 4.49141 4.51343 4.66908 4.75847 4.79375 4.94542 4.99507 5.10163 5.17715 5.28153 5.40741 5.45726 5.53935 5.58784 5.74321 5.81284 5.88082 5.95669 5.98263 6.01323 6.11140 6.16153 6.23247 6.36195 6.43481 6.45890 6.47870 6.51659 6.73333 6.76461 6.80597 6.84269 6.88571 7.16814 7.21001 7.24185 7.38378 7.72521 7.78616 7.88730 8.50029 8.58609 9.25281 9.88002 10.47453 11.26310 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.002450 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.144468 B =11424.065647 C =11762.556844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.277 6.277 4 C 0.185 3.815 5 C -0.223 4.223 6 C -0.057 4.057 7 C -0.169 4.169 8 C -0.047 4.047 9 C -0.169 4.169 10 C 0.553 3.447 11 O -0.522 6.522 12 N -0.724 5.724 13 C 0.123 3.877 14 C -0.145 4.145 15 C 0.153 3.847 16 N -0.579 5.579 17 C -0.253 4.253 18 H 0.058 0.942 19 C 0.013 3.987 20 N -0.885 5.885 21 Si 0.891 3.109 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.162 3.838 26 C -0.145 4.145 27 C -0.153 4.153 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.395 0.605 38 H 0.061 0.939 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.048 0.952 42 H 0.024 0.976 43 H 0.094 0.906 44 H 0.254 0.746 45 H 0.044 0.956 46 H 0.053 0.947 47 H 0.028 0.972 48 H 0.051 0.949 49 H 0.042 0.958 50 H 0.035 0.965 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.483 -21.226 -6.084 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.189 6.189 4 C 0.137 3.863 5 C -0.242 4.242 6 C -0.075 4.075 7 C -0.187 4.187 8 C -0.066 4.066 9 C -0.172 4.172 10 C 0.339 3.661 11 O -0.399 6.399 12 N -0.377 5.377 13 C 0.000 4.000 14 C -0.186 4.186 15 C 0.025 3.975 16 N -0.299 5.299 17 C -0.383 4.383 18 H 0.076 0.924 19 C -0.187 4.187 20 N -0.527 5.527 21 Si 0.720 3.280 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.055 3.945 26 C -0.204 4.204 27 C -0.213 4.213 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.230 0.770 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.043 0.957 43 H 0.112 0.888 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.061 0.939 50 H 0.054 0.946 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.239 -21.144 -5.973 22.588 hybrid contribution 0.996 -0.113 1.025 1.434 sum 6.235 -21.257 -4.947 22.699 Atomic orbital electron populations 1.21741 0.92446 1.02441 1.04151 1.22881 0.96501 0.82269 1.01030 1.86406 1.17697 1.28320 1.86432 1.19033 0.83205 0.92632 0.91449 1.21236 0.94392 0.97956 1.10636 1.21103 0.94243 0.97512 0.94651 1.20991 1.00168 0.92164 1.05369 1.21237 0.91253 0.99673 0.94450 1.19501 0.93711 0.91593 1.12438 1.17987 0.87917 0.82818 0.77360 1.90817 1.14349 1.85918 1.48821 1.46081 1.10510 1.05743 1.75334 1.21457 0.93003 0.83631 1.01947 1.22493 1.00116 0.94590 1.01380 1.20775 0.92108 0.82878 1.01697 1.43839 1.61846 1.23625 1.00627 1.18860 0.96326 1.34581 0.88509 0.92402 1.25170 0.94640 1.00000 0.98923 1.70005 1.00814 1.51823 1.30080 0.86503 0.78434 0.77750 0.85295 1.21389 1.21566 1.20438 1.20411 0.92338 0.92775 0.88961 1.22059 1.01593 0.98293 0.98490 1.22180 0.99064 1.00403 0.99604 0.91281 0.90577 0.91252 0.92130 0.92116 0.84989 0.85443 0.85252 0.84830 0.77016 0.92016 0.91512 0.91687 0.93286 0.95714 0.88819 0.93634 0.93731 0.92795 0.95324 0.93008 0.93903 0.94637 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 2 C 0.05 0.45 5.46 37.16 0.20 0.65 16 3 O -0.28 -3.90 8.21 -40.53 -0.33 -4.23 16 4 C 0.19 2.41 6.70 -38.70 -0.26 2.15 16 5 C -0.22 -2.14 9.03 -39.47 -0.36 -2.50 16 6 C -0.06 -0.46 10.03 -39.53 -0.40 -0.86 16 7 C -0.17 -1.45 10.02 -39.63 -0.40 -1.84 16 8 C -0.05 -0.49 9.53 -39.20 -0.37 -0.87 16 9 C -0.17 -2.30 5.89 -104.85 -0.62 -2.92 16 10 C 0.55 9.23 7.76 -12.47 -0.10 9.13 16 11 O -0.52 -10.66 15.16 -16.59 -0.25 -10.91 16 12 N -0.72 -11.01 5.51 -61.35 -0.34 -11.35 16 13 C 0.12 2.15 5.67 -4.04 -0.02 2.12 16 14 C -0.15 -2.70 5.65 -26.74 -0.15 -2.85 16 15 C 0.15 3.43 5.27 -4.04 -0.02 3.41 16 16 N -0.58 -13.74 2.36 -165.66 -0.39 -14.13 16 17 C -0.25 -6.61 8.23 -15.06 -0.12 -6.73 16 18 H 0.06 1.53 6.95 -52.49 -0.36 1.16 16 19 C 0.01 0.35 4.94 -17.43 -0.09 0.27 16 20 N -0.89 -25.06 11.52 55.49 0.64 -24.43 16 21 Si 0.89 21.34 29.61 -169.99 -5.03 16.31 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.16 3.34 3.36 -67.93 -0.23 3.11 16 26 C -0.15 -2.96 9.03 37.16 0.34 -2.62 16 27 C -0.15 -2.79 9.20 37.16 0.34 -2.45 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.45 7.66 -51.92 -0.40 0.05 16 32 H 0.06 0.46 7.66 -51.92 -0.40 0.06 16 33 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 1.13 6.40 -52.48 -0.34 0.79 16 37 H 0.40 4.90 6.50 -40.82 -0.27 4.63 16 38 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 42 H 0.02 0.54 7.90 -51.93 -0.41 0.13 16 43 H 0.09 2.42 5.56 -51.93 -0.29 2.13 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.04 0.87 7.78 -51.93 -0.40 0.47 16 46 H 0.05 1.16 7.80 -51.93 -0.40 0.75 16 47 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 51 H 0.05 1.05 7.06 -51.93 -0.37 0.68 16 LS Contribution 411.33 15.07 6.20 6.20 Total: -1.00 -32.27 411.33 -9.97 -42.24 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -8.60 Total: 3.99 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.87 Total: -3.69 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.09 Total: -49.90 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.58 Total: -15.14 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.27 -9.97 -42.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732015300.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.573 kcal (2) G-P(sol) polarization free energy of solvation -32.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds