Wall clock time and date at job start Tue Mar 31 2020 19:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42894 * 109.47631 * 2 1 4 4 C 1.35652 * 117.00366 * 180.02562 * 3 2 1 5 5 C 1.38704 * 120.14661 * 359.97244 * 4 3 2 6 6 C 1.38060 * 120.08366 * 180.02562 * 5 4 3 7 7 C 1.38552 * 120.38766 * 0.02562 * 6 5 4 8 8 C 1.37790 * 120.29952 * 0.02562 * 7 6 5 9 9 C 1.39698 * 119.90928 * 359.97438 * 8 7 6 10 10 C 1.47538 * 120.19174 * 180.02562 * 9 8 7 11 11 O 1.21591 * 120.00253 * 179.97438 * 10 9 8 12 12 N 1.34773 * 119.99960 * 0.02562 * 10 9 8 13 13 C 1.46503 * 120.00104 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47184 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47162 * 179.97438 * 14 13 12 16 16 N 1.46501 * 109.47290 * 179.97438 * 15 14 13 17 17 C 1.36934 * 120.00432 * 270.00413 * 16 15 14 18 18 H 1.08001 * 120.00326 * 141.91226 * 17 16 15 19 19 C 1.38814 * 119.99932 * 321.91406 * 17 16 15 20 20 N 1.31624 * 119.99595 * 338.45667 * 19 17 16 21 21 Si 1.86800 * 120.00205 * 158.45515 * 19 17 16 22 22 H 1.48503 * 109.46805 * 90.00072 * 21 19 17 23 23 H 1.48498 * 109.47055 * 209.99816 * 21 19 17 24 24 H 1.48495 * 109.46919 * 329.99813 * 21 19 17 25 25 C 1.46501 * 119.99790 * 90.00243 * 16 15 14 26 26 C 1.53002 * 109.47214 * 122.24257 * 25 16 15 27 27 C 1.53001 * 109.47182 * 242.24250 * 25 16 15 28 28 H 1.08998 * 109.47182 * 59.99961 * 1 2 3 29 29 H 1.09004 * 109.47413 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46982 * 300.00141 * 1 2 3 31 31 H 1.09009 * 109.46874 * 239.99487 * 2 1 3 32 32 H 1.09008 * 109.47044 * 120.00048 * 2 1 3 33 33 H 1.07999 * 119.96099 * 0.02988 * 5 4 3 34 34 H 1.07998 * 119.80900 * 180.28153 * 6 5 4 35 35 H 1.07997 * 119.84996 * 180.02562 * 7 6 5 36 36 H 1.08005 * 120.04041 * 179.97438 * 8 7 6 37 37 H 0.97000 * 120.00197 * 359.97438 * 12 10 9 38 38 H 1.09007 * 109.47076 * 300.00384 * 13 12 10 39 39 H 1.08997 * 109.46837 * 60.00089 * 13 12 10 40 40 H 1.08993 * 109.47355 * 300.00278 * 14 13 12 41 41 H 1.09011 * 109.47175 * 60.00317 * 14 13 12 42 42 H 1.09000 * 109.47447 * 300.00077 * 15 14 13 43 43 H 1.09004 * 109.47075 * 60.00053 * 15 14 13 44 44 H 0.97003 * 119.99616 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.47159 * 2.24462 * 25 16 15 46 46 H 1.08994 * 109.47245 * 65.39827 * 26 25 16 47 47 H 1.08996 * 109.47074 * 185.40575 * 26 25 16 48 48 H 1.09003 * 109.46690 * 305.40424 * 26 25 16 49 49 H 1.09001 * 109.47141 * 60.43826 * 27 25 16 50 50 H 1.09002 * 109.47094 * 180.43846 * 27 25 16 51 51 H 1.08996 * 109.46641 * 300.43449 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3513 1.5249 -0.0005 5 6 4.1990 0.4270 -0.0005 6 6 5.5675 0.6094 -0.0005 7 6 6.1044 1.8867 0.0000 8 6 5.2770 2.9885 0.0010 9 6 3.8904 2.8184 0.0010 10 6 2.9987 3.9938 0.0015 11 8 1.7923 3.8418 0.0011 12 7 3.5213 5.2361 0.0014 13 6 2.6358 6.4033 0.0014 14 6 3.4768 7.6814 0.0007 15 6 2.5521 8.9003 -0.0001 16 7 3.3574 10.1242 -0.0001 17 6 3.7334 10.6965 1.1857 18 1 4.7141 11.1376 1.2854 19 6 2.8539 10.7098 2.2596 20 7 1.5607 10.5781 2.0528 21 14 3.5058 10.9146 3.9982 22 1 3.5557 12.3586 4.3411 23 1 2.6085 10.2107 4.9493 24 1 4.8711 10.3373 4.0861 25 6 3.7604 10.7357 -1.2689 26 6 3.2476 12.1761 -1.3264 27 6 5.2867 10.7331 -1.3742 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5140 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.7881 -0.5717 -0.0005 34 1 6.2234 -0.2486 -0.0051 35 1 7.1762 2.0193 -0.0005 36 1 5.7000 3.9823 0.0018 37 1 4.4836 5.3575 0.0014 38 1 2.0068 6.3821 -0.8886 39 1 2.0069 6.3822 0.8914 40 1 4.1061 7.7028 0.8903 41 1 4.1054 7.7023 -0.8897 42 1 1.9231 8.8788 -0.8900 43 1 1.9231 8.8797 0.8900 44 1 0.9462 10.5877 2.8032 45 1 3.3381 10.1664 -2.0970 46 1 3.7428 12.7690 -0.5575 47 1 3.4635 12.5997 -2.3073 48 1 2.1711 12.1856 -1.1555 49 1 5.6515 9.7065 -1.3411 50 1 5.5868 11.1952 -2.3148 51 1 5.7092 11.2959 -0.5419 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732015300.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:26 Heat of formation + Delta-G solvation = -57.451116 kcal Electronic energy + Delta-G solvation = -28710.456902 eV Core-core repulsion = 24802.770907 eV Total energy + Delta-G solvation = -3907.685996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.58814 -40.08924 -38.50682 -38.33898 -36.31959 -34.27740 -33.44009 -32.89437 -31.99956 -30.60565 -30.24887 -27.72101 -27.18090 -25.38754 -25.04082 -23.87311 -22.66213 -22.30926 -21.39950 -21.23898 -19.52308 -18.20487 -18.15120 -17.28504 -17.15666 -16.94351 -16.48250 -16.29906 -16.08158 -15.76840 -15.64200 -15.47856 -14.97041 -14.55535 -14.38027 -14.35825 -14.18654 -14.04511 -13.41686 -13.31015 -13.23552 -13.15747 -12.93501 -12.91922 -12.83317 -12.70990 -12.54912 -12.46325 -12.34459 -12.13785 -11.99643 -11.89805 -11.69722 -11.68450 -11.30912 -11.23179 -10.86131 -10.44813 -10.22327 -9.96512 -9.22963 -8.46831 -7.75396 -5.36834 -0.13703 0.41036 1.44937 1.49040 1.56488 1.90303 2.16086 2.24998 2.54475 2.85795 3.31205 3.62168 3.68784 3.78124 3.96354 4.01775 4.17376 4.18037 4.21919 4.32242 4.34032 4.37695 4.41211 4.48582 4.53076 4.65161 4.74062 4.80916 4.82413 4.85321 4.88815 4.97577 4.98999 5.10196 5.13720 5.17514 5.22304 5.22946 5.24510 5.32826 5.45357 5.46428 5.49685 5.63806 5.70173 5.77039 5.77968 5.90052 6.41774 6.55238 6.60554 7.25027 7.26873 7.96047 8.49059 9.20164 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.002450 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.144468 B =11424.065647 C =11762.556844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.040 3.960 3 O -0.317 6.317 4 C 0.161 3.839 5 C -0.223 4.223 6 C -0.045 4.045 7 C -0.165 4.165 8 C -0.049 4.049 9 C -0.204 4.204 10 C 0.548 3.452 11 O -0.572 6.572 12 N -0.714 5.714 13 C 0.136 3.864 14 C -0.120 4.120 15 C 0.152 3.848 16 N -0.593 5.593 17 C -0.245 4.245 18 H 0.057 0.943 19 C -0.038 4.038 20 N -0.918 5.918 21 Si 0.946 3.054 22 H -0.287 1.287 23 H -0.298 1.298 24 H -0.269 1.269 25 C 0.152 3.848 26 C -0.137 4.137 27 C -0.141 4.141 28 H 0.053 0.947 29 H 0.108 0.892 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.162 0.838 36 H 0.149 0.851 37 H 0.411 0.589 38 H 0.057 0.943 39 H 0.040 0.960 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.025 0.975 43 H 0.058 0.942 44 H 0.247 0.753 45 H 0.057 0.943 46 H 0.036 0.964 47 H 0.065 0.935 48 H 0.022 0.978 49 H 0.048 0.952 50 H 0.066 0.934 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.999 -23.332 -7.118 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.229 6.229 4 C 0.113 3.887 5 C -0.241 4.241 6 C -0.063 4.063 7 C -0.183 4.183 8 C -0.068 4.068 9 C -0.208 4.208 10 C 0.337 3.663 11 O -0.453 6.453 12 N -0.367 5.367 13 C 0.011 3.989 14 C -0.160 4.160 15 C 0.025 3.975 16 N -0.314 5.314 17 C -0.376 4.376 18 H 0.074 0.926 19 C -0.235 4.235 20 N -0.562 5.562 21 Si 0.775 3.225 22 H -0.213 1.213 23 H -0.225 1.225 24 H -0.194 1.194 25 C 0.046 3.954 26 C -0.196 4.196 27 C -0.200 4.200 28 H 0.072 0.928 29 H 0.127 0.873 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.174 0.826 34 H 0.184 0.816 35 H 0.179 0.821 36 H 0.166 0.834 37 H 0.248 0.752 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.083 0.917 48 H 0.041 0.959 49 H 0.067 0.933 50 H 0.085 0.915 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 8.820 -23.249 -7.024 25.839 hybrid contribution -0.058 0.484 1.259 1.350 sum 8.762 -22.765 -5.766 25.065 Atomic orbital electron populations 1.21788 0.92462 1.03983 1.02466 1.23162 0.96607 0.80904 1.02731 1.86362 1.18797 1.30969 1.86819 1.19396 0.83375 0.93474 0.92438 1.21545 0.94827 0.97964 1.09803 1.21622 0.94011 0.98745 0.91890 1.21415 1.01530 0.91647 1.03686 1.21465 0.89959 1.01393 0.93942 1.19445 0.94632 0.90578 1.16102 1.18599 0.87862 0.83795 0.76038 1.90778 1.16600 1.86642 1.51248 1.45876 1.11008 1.04837 1.74982 1.21114 0.92909 0.84311 1.00524 1.22124 0.99081 0.93062 1.01755 1.20655 0.92521 0.84326 0.99976 1.44067 1.61811 1.24271 1.01243 1.19027 0.95900 1.33168 0.89462 0.92570 1.25789 0.94792 1.00958 1.01946 1.70143 1.01780 1.53971 1.30329 0.85625 0.77973 0.77382 0.81564 1.21347 1.22504 1.19413 1.20673 0.94258 0.92667 0.87837 1.21972 0.99340 0.98319 0.99964 1.22023 0.96506 1.00912 1.00577 0.92824 0.87346 0.93049 0.90166 0.90388 0.82588 0.81626 0.82069 0.83358 0.75183 0.92493 0.94120 0.92696 0.91179 0.95677 0.92444 0.94400 0.92464 0.94528 0.91657 0.95902 0.93281 0.91548 0.94373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 10.28 71.98 0.74 -1.83 16 2 C 0.04 0.72 5.46 71.98 0.39 1.11 16 3 O -0.32 -9.22 8.21 -68.76 -0.56 -9.78 16 4 C 0.16 4.14 6.70 22.84 0.15 4.30 16 5 C -0.22 -3.69 9.03 22.34 0.20 -3.49 16 6 C -0.04 -0.54 10.03 22.30 0.22 -0.32 16 7 C -0.16 -2.18 10.02 22.24 0.22 -1.96 16 8 C -0.05 -0.92 9.53 22.52 0.21 -0.71 16 9 C -0.20 -5.55 5.89 -20.01 -0.12 -5.67 16 10 C 0.55 19.03 7.76 86.70 0.67 19.70 16 11 O -0.57 -24.95 15.16 16.91 0.26 -24.69 16 12 N -0.71 -22.03 5.51 -466.26 -2.57 -24.60 16 13 C 0.14 4.92 5.67 86.38 0.49 5.41 16 14 C -0.12 -4.45 5.65 30.59 0.17 -4.28 16 15 C 0.15 7.00 5.27 86.38 0.46 7.46 16 16 N -0.59 -28.19 2.36 -678.03 -1.60 -29.79 16 17 C -0.24 -12.88 8.23 84.03 0.69 -12.19 16 18 H 0.06 2.96 6.95 -2.91 -0.02 2.93 16 19 C -0.04 -2.08 4.94 84.86 0.42 -1.66 16 20 N -0.92 -53.99 11.52 21.65 0.25 -53.74 16 21 Si 0.95 44.71 29.61 68.60 2.03 46.74 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 23 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 25 C 0.15 6.04 3.36 44.99 0.15 6.19 16 26 C -0.14 -5.46 9.03 71.98 0.65 -4.81 16 27 C -0.14 -4.77 9.20 71.98 0.66 -4.10 16 28 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.07 7.66 -2.38 -0.02 1.05 16 32 H 0.08 1.08 7.66 -2.38 -0.02 1.06 16 33 H 0.16 1.70 6.30 -2.91 -0.02 1.69 16 34 H 0.17 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 36 H 0.15 2.16 6.40 -2.91 -0.02 2.14 16 37 H 0.41 9.84 6.50 -92.71 -0.60 9.24 16 38 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.02 1.12 7.90 -2.39 -0.02 1.10 16 43 H 0.06 3.12 5.56 -2.38 -0.01 3.11 16 44 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 45 H 0.06 2.13 7.78 -2.39 -0.02 2.12 16 46 H 0.04 1.55 7.80 -2.39 -0.02 1.53 16 47 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.04 1.39 7.06 -2.39 -0.02 1.38 16 Total: -1.00 -74.69 411.33 4.51 -70.18 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 0.31 Total: 22.53 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 6.40 Total: 3.16 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.92 Total: -108.13 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.31 Total: -34.48 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -74.69 4.51 -70.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732015300.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.732 kcal (2) G-P(sol) polarization free energy of solvation -74.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds