Wall clock time and date at job start Tue Mar 31 2020 19:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47081 * 2 1 4 4 C 1.35901 * 117.00378 * 180.02562 * 3 2 1 5 5 C 1.38731 * 120.05881 * 179.97438 * 4 3 2 6 6 C 1.38145 * 119.93990 * 180.02562 * 5 4 3 7 7 C 1.38266 * 120.06024 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.94383 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.47323 * 89.99699 * 8 7 6 10 10 O 1.21287 * 119.99416 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00338 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00423 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47361 * 180.02562 * 12 11 9 14 14 H 1.08994 * 109.47294 * 64.99703 * 13 12 11 15 15 N 1.46505 * 109.47024 * 304.99744 * 13 12 11 16 16 C 1.36931 * 119.99788 * 155.00126 * 15 13 12 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 13 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48508 * 109.46872 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 119.99997 * 20 18 16 23 23 H 1.48498 * 109.47018 * 240.00044 * 20 18 16 24 24 C 1.53006 * 109.47104 * 185.00342 * 13 12 11 25 25 C 1.53000 * 109.47536 * 64.99279 * 24 13 12 26 26 C 1.52996 * 109.47080 * 185.00361 * 24 13 12 27 27 C 1.38267 * 120.10917 * 0.24790 * 7 6 5 28 28 C 1.38145 * 120.05543 * 359.45410 * 27 7 6 29 29 H 1.08996 * 109.47237 * 59.99904 * 1 2 3 30 30 H 1.09002 * 109.47071 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47130 * 300.00307 * 1 2 3 32 32 H 1.08996 * 109.47180 * 240.00081 * 2 1 3 33 33 H 1.09006 * 109.46869 * 119.99727 * 2 1 3 34 34 H 1.07994 * 120.02946 * 0.02562 * 5 4 3 35 35 H 1.08002 * 119.96703 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.47341 * 329.99800 * 8 7 6 37 37 H 1.09002 * 109.47312 * 209.99658 * 8 7 6 38 38 H 0.96998 * 119.99979 * 359.97438 * 11 9 8 39 39 H 1.09005 * 109.46957 * 59.99705 * 12 11 9 40 40 H 1.09002 * 109.46680 * 300.00186 * 12 11 9 41 41 H 0.97000 * 119.99792 * 334.99921 * 15 13 12 42 42 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.46373 * 304.99589 * 24 13 12 44 44 H 1.09001 * 109.46343 * 60.00562 * 25 24 13 45 45 H 1.09001 * 109.46730 * 179.97438 * 25 24 13 46 46 H 1.08996 * 109.46957 * 300.00571 * 25 24 13 47 47 H 1.09005 * 109.46888 * 299.98914 * 26 24 13 48 48 H 1.08998 * 109.47562 * 59.98997 * 26 24 13 49 49 H 1.08999 * 109.47396 * 179.97438 * 26 24 13 50 50 H 1.07996 * 119.96900 * 179.70917 * 27 7 6 51 51 H 1.08001 * 120.02833 * 180.25483 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 3.8851 2.8069 -0.0011 6 6 5.2550 2.9851 -0.0022 7 6 6.0962 1.8878 -0.0032 8 6 7.5902 2.0853 -0.0050 9 6 8.0899 2.1511 1.4152 10 8 7.3096 2.0474 2.3380 11 7 9.4038 2.3243 1.6600 12 6 9.8897 2.3877 3.0406 13 6 11.4065 2.5884 3.0388 14 1 11.6440 3.5594 2.6046 15 7 12.0380 1.5310 2.2453 16 6 13.2612 1.7457 1.6686 17 1 13.7607 2.6944 1.7990 18 6 13.8622 0.7418 0.9216 19 7 13.2537 -0.4144 0.7631 20 14 15.5344 1.0321 0.1413 21 1 16.0009 2.4040 0.4664 22 1 16.5056 0.0404 0.6688 23 1 15.4256 0.8829 -1.3322 24 6 11.9304 2.5299 4.4752 25 6 11.7083 1.1264 5.0424 26 6 13.4256 2.8539 4.4862 27 6 5.5689 0.6096 -0.0084 28 6 4.1998 0.4259 -0.0011 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.2285 3.6643 -0.0007 35 1 5.6692 3.9825 -0.0031 36 1 7.8332 3.0153 -0.5191 37 1 8.0664 1.2506 -0.5194 38 1 10.0280 2.4061 0.9220 39 1 9.6464 1.4577 3.5545 40 1 9.4138 3.2224 3.5552 41 1 11.5895 0.6788 2.1286 42 1 13.6735 -1.1158 0.2408 43 1 11.3964 3.2575 5.0864 44 1 12.2423 0.3989 4.4311 45 1 12.0820 1.0848 6.0655 46 1 10.6431 0.8957 5.0345 47 1 13.9595 2.1263 3.8750 48 1 13.5837 3.8538 4.0821 49 1 13.7988 2.8127 5.5095 50 1 6.2281 -0.2458 -0.0140 51 1 3.7884 -0.5727 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732569627.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:24 Heat of formation + Delta-G solvation = -57.348304 kcal Electronic energy + Delta-G solvation = -28447.565064 eV Core-core repulsion = 24539.883526 eV Total energy + Delta-G solvation = -3907.681538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.33346 -39.36117 -37.77948 -37.08915 -33.77615 -32.92578 -32.73681 -31.44378 -30.93164 -30.18014 -28.28652 -26.66939 -26.22868 -24.24092 -23.68173 -22.43742 -22.02976 -21.19768 -19.97058 -18.74241 -18.38773 -17.36591 -16.59121 -16.30179 -16.18458 -15.99310 -15.22357 -14.99921 -14.66399 -14.40678 -14.20057 -13.75889 -13.66745 -13.53747 -13.46216 -13.32260 -13.12873 -12.92808 -12.85682 -12.22875 -12.16707 -11.98361 -11.90526 -11.62040 -11.51052 -11.31557 -11.00601 -10.97873 -10.89760 -10.81417 -10.80819 -10.54254 -10.29164 -10.11979 -9.90380 -9.53870 -9.45793 -9.00257 -8.95354 -8.55039 -8.11059 -7.03878 -5.84055 -3.12434 1.33950 1.38876 3.01652 3.02329 3.37155 3.44135 3.45964 3.52138 3.92623 4.52318 4.61094 4.61603 4.75881 4.81504 4.84026 4.94413 5.15846 5.26176 5.27020 5.34216 5.41006 5.43389 5.45643 5.50997 5.54136 5.63611 5.68256 5.73231 5.74317 5.85327 5.90967 6.00981 6.12639 6.22417 6.24576 6.31878 6.33747 6.43746 6.55616 6.62157 6.65235 6.71443 6.72772 6.82844 6.98452 7.07605 7.29081 7.31583 7.65331 7.99849 8.33439 8.64580 9.45786 10.00971 10.37282 11.37763 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016485 B = 0.002192 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.058300 B =12768.947797 C =13589.700878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.123 3.877 5 C -0.152 4.152 6 C -0.067 4.067 7 C -0.093 4.093 8 C -0.101 4.101 9 C 0.510 3.490 10 O -0.548 6.548 11 N -0.714 5.714 12 C 0.113 3.887 13 C 0.168 3.832 14 H 0.053 0.947 15 N -0.717 5.717 16 C -0.234 4.234 17 H 0.073 0.927 18 C -0.012 4.012 19 N -0.929 5.929 20 Si 0.901 3.099 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.293 1.293 24 C -0.107 4.107 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.064 4.064 28 C -0.206 4.206 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.410 0.590 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.385 0.615 42 H 0.254 0.746 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.036 0.964 46 H 0.043 0.957 47 H 0.085 0.915 48 H 0.039 0.961 49 H 0.032 0.968 50 H 0.124 0.876 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.739 3.609 -1.821 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.078 3.922 5 C -0.170 4.170 6 C -0.085 4.085 7 C -0.094 4.094 8 C -0.141 4.141 9 C 0.296 3.704 10 O -0.426 6.426 11 N -0.365 5.365 12 C -0.011 4.011 13 C 0.057 3.943 14 H 0.071 0.929 15 N -0.359 5.359 16 C -0.365 4.365 17 H 0.091 0.909 18 C -0.208 4.208 19 N -0.577 5.577 20 Si 0.733 3.267 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.220 1.220 24 C -0.129 4.129 25 C -0.198 4.198 26 C -0.199 4.199 27 C -0.083 4.083 28 C -0.225 4.225 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.246 0.754 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.062 0.938 47 H 0.104 0.896 48 H 0.058 0.942 49 H 0.051 0.949 50 H 0.142 0.858 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.276 3.739 -1.230 19.673 hybrid contribution 1.343 -0.488 -0.697 1.590 sum -17.933 3.250 -1.927 18.327 Atomic orbital electron populations 1.21773 0.92855 1.02788 1.03450 1.22760 0.95736 0.82180 1.01461 1.86039 1.19308 1.29129 1.88894 1.18956 0.81994 0.94236 0.96986 1.20326 0.95060 0.94670 1.06985 1.20784 0.92083 0.98566 0.97033 1.19225 0.94024 0.93289 1.02868 1.20628 0.92913 1.05177 0.95379 1.20468 0.82387 0.76565 0.90988 1.90685 1.55567 1.50134 1.46202 1.45998 1.07739 1.72925 1.09878 1.21700 0.95401 1.01524 0.82491 1.20550 0.88613 0.93798 0.91334 0.92918 1.42425 1.20811 1.13757 1.58904 1.19246 0.94859 0.98586 1.23842 0.90900 1.24715 0.98625 0.96214 1.01240 1.69666 1.38609 1.04538 1.44902 0.86209 0.84369 0.77244 0.78901 1.20602 1.22026 1.22000 1.21615 0.96912 0.96565 0.97829 1.21768 1.00569 0.97995 0.99426 1.21839 0.96267 1.01678 1.00093 1.20817 0.94288 0.96801 0.96349 1.21152 0.94244 0.97856 1.09257 0.91588 0.90428 0.91543 0.92085 0.92016 0.85427 0.85533 0.88171 0.87805 0.75390 0.91600 0.92178 0.78047 0.93595 0.93303 0.90991 0.94455 0.93805 0.89602 0.94170 0.94879 0.85756 0.85702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.05 0.44 5.46 37.16 0.20 0.65 16 3 O -0.32 -3.70 10.14 -19.43 -0.20 -3.90 16 4 C 0.12 1.55 6.69 -39.22 -0.26 1.29 16 5 C -0.15 -1.86 9.99 -39.43 -0.39 -2.26 16 6 C -0.07 -0.82 9.69 -39.61 -0.38 -1.21 16 7 C -0.09 -1.23 4.37 -104.60 -0.46 -1.69 16 8 C -0.10 -1.26 5.83 -29.03 -0.17 -1.43 16 9 C 0.51 8.17 7.82 -10.99 -0.09 8.09 16 10 O -0.55 -10.65 16.03 5.55 0.09 -10.57 16 11 N -0.71 -11.43 5.39 -60.29 -0.32 -11.76 16 12 C 0.11 1.90 5.10 -4.04 -0.02 1.88 16 13 C 0.17 3.00 2.29 -67.93 -0.16 2.85 16 14 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 15 N -0.72 -15.55 3.53 -53.42 -0.19 -15.74 16 16 C -0.23 -5.72 7.75 -15.06 -0.12 -5.84 16 17 H 0.07 1.76 7.32 -52.49 -0.38 1.38 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -25.98 13.06 55.49 0.72 -25.26 16 20 Si 0.90 21.09 29.55 -169.99 -5.02 16.07 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C -0.11 -1.82 2.74 -90.62 -0.25 -2.07 16 25 C -0.14 -2.41 8.74 37.16 0.32 -2.09 16 26 C -0.14 -2.48 8.46 37.16 0.31 -2.16 16 27 C -0.06 -0.83 9.69 -39.60 -0.38 -1.22 16 28 C -0.21 -2.50 9.04 -39.43 -0.36 -2.86 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 33 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 34 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.10 1.02 8.08 -51.93 -0.42 0.60 16 37 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 38 H 0.41 6.52 8.14 -40.82 -0.33 6.19 16 39 H 0.07 1.19 6.35 -51.93 -0.33 0.86 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.39 9.22 7.80 -40.82 -0.32 8.91 16 42 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.44 7.47 -51.93 -0.39 1.06 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.04 0.72 6.46 -51.93 -0.34 0.38 16 47 H 0.09 1.77 5.99 -51.93 -0.31 1.46 16 48 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 51 H 0.13 1.23 6.30 -52.49 -0.33 0.90 16 LS Contribution 411.49 15.07 6.20 6.20 Total: -1.00 -29.98 411.49 -9.20 -39.18 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -8.57 Total: 14.78 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.91 Total: -9.01 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.21 Total: -52.75 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.11 Total: -14.46 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -29.98 -9.20 -39.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732569627.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.172 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds