Wall clock time and date at job start Tue Mar 31 2020 19:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42895 * 109.47081 * 2 1 4 4 C 1.35901 * 117.00378 * 180.02562 * 3 2 1 5 5 C 1.38731 * 120.05881 * 179.97438 * 4 3 2 6 6 C 1.38145 * 119.93990 * 180.02562 * 5 4 3 7 7 C 1.38266 * 120.06024 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.94383 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.47323 * 89.99699 * 8 7 6 10 10 O 1.21287 * 119.99416 * 0.02562 * 9 8 7 11 11 N 1.34770 * 120.00338 * 179.97438 * 9 8 7 12 12 C 1.46500 * 120.00423 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47361 * 180.02562 * 12 11 9 14 14 H 1.08994 * 109.47294 * 64.99703 * 13 12 11 15 15 N 1.46505 * 109.47024 * 304.99744 * 13 12 11 16 16 C 1.36931 * 119.99788 * 155.00126 * 15 13 12 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 13 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48508 * 109.46872 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 119.99997 * 20 18 16 23 23 H 1.48498 * 109.47018 * 240.00044 * 20 18 16 24 24 C 1.53006 * 109.47104 * 185.00342 * 13 12 11 25 25 C 1.53000 * 109.47536 * 64.99279 * 24 13 12 26 26 C 1.52996 * 109.47080 * 185.00361 * 24 13 12 27 27 C 1.38267 * 120.10917 * 0.24790 * 7 6 5 28 28 C 1.38145 * 120.05543 * 359.45410 * 27 7 6 29 29 H 1.08996 * 109.47237 * 59.99904 * 1 2 3 30 30 H 1.09002 * 109.47071 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47130 * 300.00307 * 1 2 3 32 32 H 1.08996 * 109.47180 * 240.00081 * 2 1 3 33 33 H 1.09006 * 109.46869 * 119.99727 * 2 1 3 34 34 H 1.07994 * 120.02946 * 0.02562 * 5 4 3 35 35 H 1.08002 * 119.96703 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.47341 * 329.99800 * 8 7 6 37 37 H 1.09002 * 109.47312 * 209.99658 * 8 7 6 38 38 H 0.96998 * 119.99979 * 359.97438 * 11 9 8 39 39 H 1.09005 * 109.46957 * 59.99705 * 12 11 9 40 40 H 1.09002 * 109.46680 * 300.00186 * 12 11 9 41 41 H 0.97000 * 119.99792 * 334.99921 * 15 13 12 42 42 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.46373 * 304.99589 * 24 13 12 44 44 H 1.09001 * 109.46343 * 60.00562 * 25 24 13 45 45 H 1.09001 * 109.46730 * 179.97438 * 25 24 13 46 46 H 1.08996 * 109.46957 * 300.00571 * 25 24 13 47 47 H 1.09005 * 109.46888 * 299.98914 * 26 24 13 48 48 H 1.08998 * 109.47562 * 59.98997 * 26 24 13 49 49 H 1.08999 * 109.47396 * 179.97438 * 26 24 13 50 50 H 1.07996 * 119.96900 * 179.70917 * 27 7 6 51 51 H 1.08001 * 120.02833 * 180.25483 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 3.8851 2.8069 -0.0011 6 6 5.2550 2.9851 -0.0022 7 6 6.0962 1.8878 -0.0032 8 6 7.5902 2.0853 -0.0050 9 6 8.0899 2.1511 1.4152 10 8 7.3096 2.0474 2.3380 11 7 9.4038 2.3243 1.6600 12 6 9.8897 2.3877 3.0406 13 6 11.4065 2.5884 3.0388 14 1 11.6440 3.5594 2.6046 15 7 12.0380 1.5310 2.2453 16 6 13.2612 1.7457 1.6686 17 1 13.7607 2.6944 1.7990 18 6 13.8622 0.7418 0.9216 19 7 13.2537 -0.4144 0.7631 20 14 15.5344 1.0321 0.1413 21 1 16.0009 2.4040 0.4664 22 1 16.5056 0.0404 0.6688 23 1 15.4256 0.8829 -1.3322 24 6 11.9304 2.5299 4.4752 25 6 11.7083 1.1264 5.0424 26 6 13.4256 2.8539 4.4862 27 6 5.5689 0.6096 -0.0084 28 6 4.1998 0.4259 -0.0011 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.2285 3.6643 -0.0007 35 1 5.6692 3.9825 -0.0031 36 1 7.8332 3.0153 -0.5191 37 1 8.0664 1.2506 -0.5194 38 1 10.0280 2.4061 0.9220 39 1 9.6464 1.4577 3.5545 40 1 9.4138 3.2224 3.5552 41 1 11.5895 0.6788 2.1286 42 1 13.6735 -1.1158 0.2408 43 1 11.3964 3.2575 5.0864 44 1 12.2423 0.3989 4.4311 45 1 12.0820 1.0848 6.0655 46 1 10.6431 0.8957 5.0345 47 1 13.9595 2.1263 3.8750 48 1 13.5837 3.8538 4.0821 49 1 13.7988 2.8127 5.5095 50 1 6.2281 -0.2458 -0.0140 51 1 3.7884 -0.5727 -0.0010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732569627.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:23 Heat of formation + Delta-G solvation = -74.288367 kcal Electronic energy + Delta-G solvation = -28448.299640 eV Core-core repulsion = 24539.883526 eV Total energy + Delta-G solvation = -3908.416114 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.28242 -40.55939 -38.96920 -38.31660 -35.18463 -34.70471 -33.59078 -32.30812 -31.90714 -31.73953 -29.69640 -27.91568 -27.53574 -25.49349 -24.94507 -23.72372 -23.01304 -22.18827 -21.22523 -20.18405 -19.25841 -19.16823 -17.90299 -17.25292 -17.09254 -17.03023 -16.69392 -16.19297 -15.99376 -15.79360 -15.37045 -15.15970 -14.97757 -14.63548 -14.47637 -14.44488 -14.35258 -14.16118 -13.75978 -13.45334 -13.37949 -12.90558 -12.88421 -12.79796 -12.77370 -12.66032 -12.51473 -12.47027 -12.37131 -12.12291 -11.91854 -11.85519 -11.66714 -11.62612 -11.35953 -11.16516 -10.92004 -10.73479 -9.93711 -9.90135 -9.04705 -8.90006 -7.83555 -5.08876 0.40998 0.42946 1.50478 1.53846 1.60448 1.75973 2.26377 2.36889 2.62774 2.88639 3.50583 3.77952 3.82342 3.92904 3.95411 3.98933 4.04373 4.13202 4.15560 4.30526 4.33331 4.35716 4.38156 4.43254 4.48643 4.53355 4.70530 4.71463 4.74687 4.81091 4.91536 4.93413 4.96459 5.01385 5.09614 5.14535 5.19605 5.24068 5.31299 5.33716 5.35745 5.39569 5.60591 5.61977 5.67143 5.68471 5.82500 5.83292 6.36960 6.46428 6.70955 7.36958 7.45572 8.17763 8.43150 9.39356 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016485 B = 0.002192 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.058300 B =12768.947797 C =13589.700878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.332 6.332 4 C 0.113 3.887 5 C -0.163 4.163 6 C -0.072 4.072 7 C -0.110 4.110 8 C -0.093 4.093 9 C 0.510 3.490 10 O -0.584 6.584 11 N -0.712 5.712 12 C 0.121 3.879 13 C 0.170 3.830 14 H 0.058 0.942 15 N -0.719 5.719 16 C -0.208 4.208 17 H 0.079 0.921 18 C -0.072 4.072 19 N -0.966 5.966 20 Si 0.955 3.045 21 H -0.267 1.267 22 H -0.306 1.306 23 H -0.300 1.300 24 C -0.106 4.106 25 C -0.133 4.133 26 C -0.137 4.137 27 C -0.080 4.080 28 C -0.212 4.212 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.411 0.589 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.373 0.627 42 H 0.245 0.755 43 H 0.077 0.923 44 H 0.036 0.964 45 H 0.054 0.946 46 H 0.047 0.953 47 H 0.050 0.950 48 H 0.048 0.952 49 H 0.050 0.950 50 H 0.128 0.872 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.427 5.062 -1.544 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.031 4.031 3 O -0.247 6.247 4 C 0.068 3.932 5 C -0.181 4.181 6 C -0.090 4.090 7 C -0.110 4.110 8 C -0.133 4.133 9 C 0.298 3.702 10 O -0.464 6.464 11 N -0.363 5.363 12 C -0.003 4.003 13 C 0.061 3.939 14 H 0.076 0.924 15 N -0.359 5.359 16 C -0.340 4.340 17 H 0.097 0.903 18 C -0.264 4.264 19 N -0.617 5.617 20 Si 0.786 3.214 21 H -0.192 1.192 22 H -0.234 1.234 23 H -0.227 1.227 24 C -0.127 4.127 25 C -0.191 4.191 26 C -0.195 4.195 27 C -0.099 4.099 28 C -0.231 4.231 29 H 0.084 0.916 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.159 0.841 35 H 0.162 0.838 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.248 0.752 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.206 0.794 42 H 0.054 0.946 43 H 0.095 0.905 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.069 0.931 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.146 0.854 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.963 5.244 -0.940 20.662 hybrid contribution 1.464 -0.897 -0.689 1.850 sum -18.499 4.347 -1.629 19.073 Atomic orbital electron populations 1.21800 0.91246 1.04178 1.03252 1.23048 0.97054 0.80928 1.02041 1.86033 1.18747 1.31128 1.88748 1.19163 0.82606 0.94553 0.96859 1.20600 0.95440 0.95248 1.06860 1.21034 0.92166 0.99242 0.96580 1.19390 0.94403 0.93664 1.03592 1.20635 0.92605 1.06937 0.93100 1.21039 0.81811 0.75289 0.92089 1.90666 1.56318 1.51791 1.47671 1.46004 1.07984 1.72776 1.09583 1.21560 0.94461 1.01217 0.83082 1.20680 0.89121 0.92586 0.91523 0.92411 1.42486 1.20121 1.14110 1.59196 1.19502 0.95099 0.98012 1.21397 0.90319 1.25294 1.01429 0.96509 1.03217 1.69799 1.39870 1.05344 1.46735 0.85336 0.81272 0.77211 0.77538 1.19196 1.23410 1.22749 1.21594 0.96898 0.97036 0.97191 1.21680 1.00424 0.97244 0.99723 1.21761 0.96117 1.00971 1.00616 1.21027 0.94887 0.97142 0.96801 1.21366 0.94024 0.98776 1.08906 0.91573 0.88237 0.91928 0.91123 0.91782 0.84114 0.83821 0.85498 0.86911 0.75215 0.93081 0.90942 0.79450 0.94592 0.90490 0.94467 0.92727 0.93365 0.93094 0.93278 0.93061 0.85378 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.28 71.98 0.74 -0.87 16 2 C 0.04 0.68 5.46 71.98 0.39 1.07 16 3 O -0.33 -7.46 10.14 -92.44 -0.94 -8.40 16 4 C 0.11 2.78 6.69 22.51 0.15 2.93 16 5 C -0.16 -3.87 9.99 22.37 0.22 -3.65 16 6 C -0.07 -1.71 9.69 22.25 0.22 -1.49 16 7 C -0.11 -2.80 4.37 -19.85 -0.09 -2.88 16 8 C -0.09 -2.21 5.83 29.10 0.17 -2.04 16 9 C 0.51 15.87 7.82 87.66 0.69 16.56 16 10 O -0.58 -22.42 16.03 -3.05 -0.05 -22.47 16 11 N -0.71 -22.07 5.39 -463.06 -2.49 -24.56 16 12 C 0.12 3.92 5.10 86.38 0.44 4.36 16 13 C 0.17 5.82 2.29 44.99 0.10 5.92 16 14 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 15 N -0.72 -30.91 3.53 -322.93 -1.14 -32.05 16 16 C -0.21 -10.05 7.75 84.04 0.65 -9.40 16 17 H 0.08 3.69 7.32 -2.91 -0.02 3.66 16 18 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 19 N -0.97 -55.12 13.06 21.65 0.28 -54.84 16 20 Si 0.95 43.68 29.55 68.60 2.03 45.71 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 22 H -0.31 -14.51 7.11 99.48 0.71 -13.80 16 23 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 24 C -0.11 -3.34 2.74 -10.79 -0.03 -3.37 16 25 C -0.13 -4.42 8.74 71.98 0.63 -3.79 16 26 C -0.14 -4.51 8.46 71.98 0.61 -3.90 16 27 C -0.08 -2.05 9.69 22.25 0.22 -1.84 16 28 C -0.21 -5.03 9.04 22.37 0.20 -4.82 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.07 0.94 7.66 -2.39 -0.02 0.92 16 33 H 0.06 0.95 7.66 -2.38 -0.02 0.93 16 34 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 35 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 36 H 0.13 2.29 8.08 -2.38 -0.02 2.27 16 37 H 0.11 2.47 8.08 -2.39 -0.02 2.45 16 38 H 0.41 12.63 8.14 -92.71 -0.75 11.87 16 39 H 0.05 1.82 6.35 -2.38 -0.02 1.80 16 40 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 41 H 0.37 18.06 7.80 -92.71 -0.72 17.34 16 42 H 0.25 13.90 8.31 -92.70 -0.77 13.13 16 43 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.04 1.48 7.47 -2.39 -0.02 1.47 16 45 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.05 1.53 6.46 -2.39 -0.02 1.52 16 47 H 0.05 2.03 5.99 -2.38 -0.01 2.02 16 48 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 51 H 0.14 2.70 6.30 -2.91 -0.02 2.68 16 Total: -1.00 -64.55 411.49 2.92 -61.63 By element: Atomic # 1 Polarization: 46.10 SS G_CDS: -0.55 Total: 45.55 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: 5.78 Total: -10.56 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -3.35 Total: -111.45 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -0.99 Total: -30.87 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -64.55 2.92 -61.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732569627.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.660 kcal (2) G-P(sol) polarization free energy of solvation -64.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds