Wall clock time and date at job start Tue Mar 31 2020 17:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47119 * 211.47170 * 3 2 1 5 5 C 1.42898 * 114.00263 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47203 * 330.00497 * 5 4 3 7 7 C 1.53002 * 109.46750 * 90.00080 * 5 4 3 8 8 C 1.50696 * 109.47424 * 210.00068 * 5 4 3 9 9 O 1.21275 * 120.00031 * 352.02107 * 8 5 4 10 10 N 1.34789 * 119.99979 * 172.01995 * 8 5 4 11 11 C 1.46917 * 120.62824 * 175.72340 * 10 8 5 12 12 C 1.53184 * 108.77917 * 233.63062 * 11 10 8 13 13 C 1.53043 * 109.31388 * 305.36979 * 12 11 10 14 14 C 1.52995 * 109.46293 * 181.38285 * 13 12 11 15 15 H 1.09000 * 110.88950 * 303.85258 * 14 13 12 16 16 C 1.55157 * 111.00531 * 179.97438 * 14 13 12 17 17 C 1.54318 * 102.94367 * 206.42136 * 16 14 13 18 18 N 1.47020 * 107.27178 * 22.19369 * 17 16 14 19 19 C 1.36939 * 125.65073 * 181.01781 * 18 17 16 20 20 H 1.08003 * 120.00086 * 185.96465 * 19 18 17 21 21 C 1.38811 * 120.00150 * 5.97165 * 19 18 17 22 22 N 1.31617 * 119.99746 * 7.60776 * 21 19 18 23 23 Si 1.86798 * 120.00051 * 187.61287 * 21 19 18 24 24 H 1.48493 * 109.46907 * 265.00716 * 23 21 19 25 25 H 1.48492 * 109.47259 * 25.01268 * 23 21 19 26 26 H 1.48503 * 109.46800 * 145.01045 * 23 21 19 27 27 C 1.47425 * 108.70389 * 1.28857 * 18 17 16 28 28 C 1.53042 * 109.52532 * 61.36694 * 13 12 11 29 29 C 1.46922 * 120.62906 * 355.74914 * 10 8 5 30 30 H 4.38443 * 5.44459 * 179.97438 * 4 1 2 31 31 H 1.09002 * 109.47236 * 91.47354 * 3 2 1 32 32 H 1.09006 * 109.47241 * 331.47338 * 3 2 1 33 33 H 1.09002 * 109.46985 * 184.83844 * 7 5 4 34 34 H 1.08996 * 109.47636 * 304.83838 * 7 5 4 35 35 H 1.08998 * 109.47393 * 64.84572 * 7 5 4 36 36 H 1.09010 * 109.58528 * 113.84438 * 11 10 8 37 37 H 1.09002 * 109.59118 * 353.42312 * 11 10 8 38 38 H 1.08999 * 109.50277 * 185.41828 * 12 11 10 39 39 H 1.08997 * 109.52504 * 65.33311 * 12 11 10 40 40 H 1.08999 * 109.45940 * 301.35634 * 13 12 11 41 41 H 1.09000 * 110.71524 * 88.06225 * 16 14 13 42 42 H 1.08994 * 110.87396 * 324.86145 * 16 14 13 43 43 H 1.09000 * 109.88722 * 262.77415 * 17 16 14 44 44 H 1.09005 * 110.01278 * 141.68094 * 17 16 14 45 45 H 0.97001 * 120.00003 * 180.02562 * 22 21 19 46 46 H 1.08996 * 110.37425 * 94.47849 * 27 18 17 47 47 H 1.08998 * 110.36858 * 216.80441 * 27 18 17 48 48 H 1.08998 * 109.49897 * 58.58172 * 28 13 12 49 49 H 1.09000 * 109.49607 * 178.68012 * 28 13 12 50 50 H 1.08998 * 109.58970 * 246.15687 * 29 10 8 51 51 H 1.09007 * 109.58793 * 6.43758 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.1500 0.7034 5 6 4.5463 1.2466 0.7628 6 1 4.9790 0.2462 0.7531 7 6 5.0548 2.0340 -0.4464 8 6 4.9492 1.9560 2.0298 9 8 4.1043 2.4678 2.7332 10 7 6.2488 2.0216 2.3813 11 6 6.6670 2.7885 3.5626 12 6 7.7577 3.7801 3.1461 13 6 8.8933 3.0224 2.4543 14 6 10.0003 4.0051 2.0676 15 1 9.6075 4.8065 1.4418 16 6 11.1726 3.2729 1.3625 17 6 12.3817 4.1817 1.6684 18 7 12.0448 4.9689 2.8635 19 6 12.8463 5.9113 3.4505 20 1 12.5490 6.3681 4.3830 21 6 14.0410 6.2796 2.8472 22 7 14.3331 5.8381 1.6422 23 14 15.2340 7.4018 3.7455 24 1 15.0002 8.8077 3.3288 25 1 15.0229 7.2778 5.2101 26 1 16.6274 7.0117 3.4114 27 6 10.7038 4.5711 3.3291 28 6 8.3579 2.3362 1.1955 29 6 7.2742 1.3279 1.5901 30 1 -1.0502 -0.0002 -0.0003 31 1 3.0093 0.0272 -1.0273 32 1 3.0097 -0.9021 0.4908 33 1 6.1448 2.0345 -0.4474 34 1 4.6909 1.5686 -1.3624 35 1 4.6913 3.0601 -0.3909 36 1 7.0603 2.1091 4.3190 37 1 5.8130 3.3327 3.9661 38 1 8.1445 4.2879 4.0296 39 1 7.3388 4.5148 2.4585 40 1 9.2956 2.2714 3.1341 41 1 10.9984 3.2114 0.2883 42 1 11.3202 2.2792 1.7854 43 1 12.5673 4.8478 0.8259 44 1 13.2656 3.5739 1.8619 45 1 15.1680 6.0952 1.2206 46 1 10.7816 3.8037 4.0992 47 1 10.1616 5.4371 3.7088 48 1 7.9328 3.0842 0.5262 49 1 9.1719 1.8162 0.6905 50 1 7.7171 0.5294 2.1853 51 1 6.8204 0.9063 0.6931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733267589.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:56 Heat of formation + Delta-G solvation = -0.852725 kcal Electronic energy + Delta-G solvation = -29184.856676 eV Core-core repulsion = 25279.624971 eV Total energy + Delta-G solvation = -3905.231705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.72525 -38.88534 -37.94397 -36.60008 -34.08785 -33.66710 -32.35096 -31.59686 -30.70764 -29.17802 -27.80700 -27.53575 -25.52118 -24.59193 -23.42896 -23.02858 -21.12561 -19.90259 -19.58565 -19.35728 -18.91754 -17.55351 -17.13195 -16.78997 -16.18335 -15.91468 -15.38611 -14.92614 -14.86967 -14.53252 -14.46529 -14.16472 -13.90366 -13.70670 -13.51910 -13.09928 -12.79271 -12.74785 -12.44969 -12.41899 -12.24522 -12.04476 -11.81453 -11.77649 -11.36229 -11.08088 -11.03241 -10.96202 -10.94110 -10.90868 -10.70894 -10.54883 -10.18690 -10.09176 -9.88712 -9.79527 -9.73595 -9.66241 -9.57446 -8.78855 -8.59827 -6.78503 -5.67760 -3.03581 1.96532 2.38140 2.40954 2.71397 3.40438 3.46062 3.48055 3.54814 4.02129 4.21264 4.39643 4.50666 4.57228 4.58449 4.71921 4.77280 4.80502 4.92369 4.97862 5.12961 5.16500 5.21818 5.27133 5.40198 5.48134 5.49716 5.57410 5.58616 5.63498 5.68377 5.76020 5.81935 5.90401 5.96894 6.00007 6.12771 6.17586 6.32730 6.38507 6.45374 6.57224 6.59491 6.63367 6.78270 7.01733 7.16882 7.17940 7.51434 7.68704 7.85586 7.97411 8.30602 9.23981 9.85676 10.52275 11.41422 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.035891 B = 0.001976 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.959295 B =14165.472802 C =14575.166141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.194 4.194 3 C 0.170 3.830 4 O -0.352 6.352 5 C 0.072 3.928 6 H 0.088 0.912 7 C -0.178 4.178 8 C 0.517 3.483 9 O -0.522 6.522 10 N -0.607 5.607 11 C 0.113 3.887 12 C -0.129 4.129 13 C -0.073 4.073 14 C -0.096 4.096 15 H 0.072 0.928 16 C -0.136 4.136 17 C 0.169 3.831 18 N -0.605 5.605 19 C -0.227 4.227 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.920 5.920 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.281 1.281 26 H -0.290 1.290 27 C 0.142 3.858 28 C -0.130 4.130 29 C 0.099 3.901 30 H 0.222 0.778 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.025 0.975 45 H 0.251 0.749 46 H 0.017 0.983 47 H 0.035 0.965 48 H 0.068 0.932 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.632 -15.063 -5.587 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.194 4.194 3 C 0.094 3.906 4 O -0.270 6.270 5 C 0.011 3.989 6 H 0.106 0.894 7 C -0.235 4.235 8 C 0.303 3.697 9 O -0.397 6.397 10 N -0.342 5.342 11 C -0.008 4.008 12 C -0.167 4.167 13 C -0.092 4.092 14 C -0.115 4.115 15 H 0.090 0.910 16 C -0.174 4.174 17 C 0.045 3.955 18 N -0.331 5.331 19 C -0.356 4.356 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.207 1.207 26 H -0.217 1.217 27 C 0.015 3.985 28 C -0.168 4.168 29 C -0.024 4.024 30 H 0.239 0.761 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.043 0.957 45 H 0.061 0.939 46 H 0.034 0.966 47 H 0.054 0.946 48 H 0.086 0.914 49 H 0.099 0.901 50 H 0.091 0.909 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.999 -14.540 -5.157 26.057 hybrid contribution 0.833 0.384 0.232 0.946 sum -20.166 -14.156 -4.925 25.126 Atomic orbital electron populations 1.24994 0.95908 0.98114 0.99718 1.22407 0.93786 1.01967 1.01226 1.19182 0.85133 0.89125 0.97127 1.88126 1.19017 1.43842 1.76027 1.21920 0.82729 0.99953 0.94265 0.89443 1.22390 1.02439 1.02047 0.96633 1.20259 0.82283 0.80815 0.86335 1.90719 1.49694 1.46240 1.53021 1.48065 1.05699 1.51413 1.29028 1.21673 0.98570 0.94157 0.86433 1.21995 0.95216 0.97800 1.01715 1.21091 0.94741 0.97391 0.96010 1.22391 0.93708 0.96933 0.98466 0.90960 1.22859 0.97033 0.98758 0.98793 1.21213 0.91734 0.91775 0.90809 1.44484 1.13941 1.43853 1.30861 1.19062 0.99542 1.13885 1.03087 0.90589 1.24799 0.98755 1.00477 0.96548 1.69964 1.24524 1.48845 1.13437 0.86134 0.80729 0.80233 0.78899 1.21686 1.20679 1.21674 1.21618 0.86958 0.96303 0.93580 1.22010 0.97717 0.98485 0.98638 1.21997 0.89547 0.95260 0.95593 0.76076 0.90499 0.90640 0.89902 0.90973 0.90859 0.91339 0.89144 0.90085 0.91529 0.90980 0.92498 0.92777 0.92114 0.95712 0.93879 0.96563 0.94639 0.91355 0.90051 0.90917 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 19.25 29.55 0.57 -0.78 16 2 C -0.19 -1.83 13.73 -37.12 -0.51 -2.34 16 3 C 0.17 1.33 6.22 34.37 0.21 1.54 16 4 O -0.35 -3.96 9.49 -55.01 -0.52 -4.49 16 5 C 0.07 0.65 2.28 -27.88 -0.06 0.58 16 6 H 0.09 0.51 6.97 -51.93 -0.36 0.14 16 7 C -0.18 -1.27 9.16 37.16 0.34 -0.93 16 8 C 0.52 6.29 7.06 -10.98 -0.08 6.21 16 9 O -0.52 -8.71 15.95 -14.22 -0.23 -8.93 16 10 N -0.61 -6.23 2.97 -172.78 -0.51 -6.75 16 11 C 0.11 1.24 6.42 -3.72 -0.02 1.21 16 12 C -0.13 -1.48 5.24 -26.61 -0.14 -1.62 16 13 C -0.07 -0.86 1.68 -90.58 -0.15 -1.01 16 14 C -0.10 -1.52 2.58 -88.35 -0.23 -1.75 16 15 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.14 -2.35 5.27 -24.90 -0.13 -2.48 16 17 C 0.17 4.04 5.45 -3.07 -0.02 4.03 16 18 N -0.61 -15.38 3.39 -169.93 -0.58 -15.96 16 19 C -0.23 -6.37 10.26 -15.06 -0.15 -6.53 16 20 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16 21 C -0.01 -0.27 5.45 -17.43 -0.09 -0.37 16 22 N -0.92 -27.09 10.46 55.49 0.58 -26.51 16 23 Si 0.91 22.19 29.56 -169.99 -5.02 17.16 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.14 2.82 5.95 -2.41 -0.01 2.81 16 28 C -0.13 -1.21 5.00 -26.61 -0.13 -1.34 16 29 C 0.10 0.75 5.58 -3.71 -0.02 0.73 16 30 H 0.22 0.91 7.80 -54.08 -0.42 0.49 16 31 H 0.08 0.41 7.79 -51.93 -0.40 0.00 16 32 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 33 H 0.08 0.50 5.39 -51.93 -0.28 0.22 16 34 H 0.07 0.39 7.79 -51.93 -0.40 -0.02 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.09 1.11 7.03 -51.93 -0.37 0.75 16 38 H 0.08 0.96 7.45 -51.93 -0.39 0.57 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 41 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 42 H 0.05 0.86 8.04 -51.93 -0.42 0.45 16 43 H 0.06 1.63 6.87 -51.93 -0.36 1.27 16 44 H 0.02 0.65 7.98 -51.93 -0.41 0.24 16 45 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 46 H 0.02 0.33 7.99 -51.93 -0.41 -0.09 16 47 H 0.04 0.71 8.04 -51.93 -0.42 0.29 16 48 H 0.07 0.66 7.81 -51.93 -0.41 0.25 16 49 H 0.08 0.72 7.21 -51.93 -0.37 0.34 16 50 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.08 0.45 4.39 -51.93 -0.23 0.22 16 LS Contribution 399.37 15.07 6.02 6.02 Total: -1.00 -35.39 399.37 -9.47 -44.87 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -8.57 Total: -3.38 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -0.64 Total: -2.04 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.51 Total: -49.21 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.75 Total: -13.42 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.39 -9.47 -44.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733267589.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.016 kcal (2) G-P(sol) polarization free energy of solvation -35.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds