Wall clock time and date at job start Tue Mar 31 2020 17:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47119 * 211.47170 * 3 2 1 5 5 C 1.42898 * 114.00263 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47203 * 330.00497 * 5 4 3 7 7 C 1.53002 * 109.46750 * 90.00080 * 5 4 3 8 8 C 1.50696 * 109.47424 * 210.00068 * 5 4 3 9 9 O 1.21275 * 120.00031 * 352.02107 * 8 5 4 10 10 N 1.34789 * 119.99979 * 172.01995 * 8 5 4 11 11 C 1.46917 * 120.62824 * 175.72340 * 10 8 5 12 12 C 1.53184 * 108.77917 * 233.63062 * 11 10 8 13 13 C 1.53043 * 109.31388 * 305.36979 * 12 11 10 14 14 C 1.52995 * 109.46293 * 181.38285 * 13 12 11 15 15 H 1.09000 * 110.88950 * 303.85258 * 14 13 12 16 16 C 1.55157 * 111.00531 * 179.97438 * 14 13 12 17 17 C 1.54318 * 102.94367 * 206.42136 * 16 14 13 18 18 N 1.47020 * 107.27178 * 22.19369 * 17 16 14 19 19 C 1.36939 * 125.65073 * 181.01781 * 18 17 16 20 20 H 1.08003 * 120.00086 * 185.96465 * 19 18 17 21 21 C 1.38811 * 120.00150 * 5.97165 * 19 18 17 22 22 N 1.31617 * 119.99746 * 7.60776 * 21 19 18 23 23 Si 1.86798 * 120.00051 * 187.61287 * 21 19 18 24 24 H 1.48493 * 109.46907 * 265.00716 * 23 21 19 25 25 H 1.48492 * 109.47259 * 25.01268 * 23 21 19 26 26 H 1.48503 * 109.46800 * 145.01045 * 23 21 19 27 27 C 1.47425 * 108.70389 * 1.28857 * 18 17 16 28 28 C 1.53042 * 109.52532 * 61.36694 * 13 12 11 29 29 C 1.46922 * 120.62906 * 355.74914 * 10 8 5 30 30 H 4.38443 * 5.44459 * 179.97438 * 4 1 2 31 31 H 1.09002 * 109.47236 * 91.47354 * 3 2 1 32 32 H 1.09006 * 109.47241 * 331.47338 * 3 2 1 33 33 H 1.09002 * 109.46985 * 184.83844 * 7 5 4 34 34 H 1.08996 * 109.47636 * 304.83838 * 7 5 4 35 35 H 1.08998 * 109.47393 * 64.84572 * 7 5 4 36 36 H 1.09010 * 109.58528 * 113.84438 * 11 10 8 37 37 H 1.09002 * 109.59118 * 353.42312 * 11 10 8 38 38 H 1.08999 * 109.50277 * 185.41828 * 12 11 10 39 39 H 1.08997 * 109.52504 * 65.33311 * 12 11 10 40 40 H 1.08999 * 109.45940 * 301.35634 * 13 12 11 41 41 H 1.09000 * 110.71524 * 88.06225 * 16 14 13 42 42 H 1.08994 * 110.87396 * 324.86145 * 16 14 13 43 43 H 1.09000 * 109.88722 * 262.77415 * 17 16 14 44 44 H 1.09005 * 110.01278 * 141.68094 * 17 16 14 45 45 H 0.97001 * 120.00003 * 180.02562 * 22 21 19 46 46 H 1.08996 * 110.37425 * 94.47849 * 27 18 17 47 47 H 1.08998 * 110.36858 * 216.80441 * 27 18 17 48 48 H 1.08998 * 109.49897 * 58.58172 * 28 13 12 49 49 H 1.09000 * 109.49607 * 178.68012 * 28 13 12 50 50 H 1.08998 * 109.58970 * 246.15687 * 29 10 8 51 51 H 1.09007 * 109.58793 * 6.43758 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.1500 0.7034 5 6 4.5463 1.2466 0.7628 6 1 4.9790 0.2462 0.7531 7 6 5.0548 2.0340 -0.4464 8 6 4.9492 1.9560 2.0298 9 8 4.1043 2.4678 2.7332 10 7 6.2488 2.0216 2.3813 11 6 6.6670 2.7885 3.5626 12 6 7.7577 3.7801 3.1461 13 6 8.8933 3.0224 2.4543 14 6 10.0003 4.0051 2.0676 15 1 9.6075 4.8065 1.4418 16 6 11.1726 3.2729 1.3625 17 6 12.3817 4.1817 1.6684 18 7 12.0448 4.9689 2.8635 19 6 12.8463 5.9113 3.4505 20 1 12.5490 6.3681 4.3830 21 6 14.0410 6.2796 2.8472 22 7 14.3331 5.8381 1.6422 23 14 15.2340 7.4018 3.7455 24 1 15.0002 8.8077 3.3288 25 1 15.0229 7.2778 5.2101 26 1 16.6274 7.0117 3.4114 27 6 10.7038 4.5711 3.3291 28 6 8.3579 2.3362 1.1955 29 6 7.2742 1.3279 1.5901 30 1 -1.0502 -0.0002 -0.0003 31 1 3.0093 0.0272 -1.0273 32 1 3.0097 -0.9021 0.4908 33 1 6.1448 2.0345 -0.4474 34 1 4.6909 1.5686 -1.3624 35 1 4.6913 3.0601 -0.3909 36 1 7.0603 2.1091 4.3190 37 1 5.8130 3.3327 3.9661 38 1 8.1445 4.2879 4.0296 39 1 7.3388 4.5148 2.4585 40 1 9.2956 2.2714 3.1341 41 1 10.9984 3.2114 0.2883 42 1 11.3202 2.2792 1.7854 43 1 12.5673 4.8478 0.8259 44 1 13.2656 3.5739 1.8619 45 1 15.1680 6.0952 1.2206 46 1 10.7816 3.8037 4.0992 47 1 10.1616 5.4371 3.7088 48 1 7.9328 3.0842 0.5262 49 1 9.1719 1.8162 0.6905 50 1 7.7171 0.5294 2.1853 51 1 6.8204 0.9063 0.6931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733267589.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:55 Heat of formation + Delta-G solvation = -22.199187 kcal Electronic energy + Delta-G solvation = -29185.782328 eV Core-core repulsion = 25279.624971 eV Total energy + Delta-G solvation = -3906.157358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.56285 -39.92797 -38.91308 -37.84799 -35.29808 -34.48867 -33.61758 -32.74705 -31.44696 -30.87422 -29.24329 -28.08532 -26.97585 -25.79705 -24.52426 -23.89041 -22.10168 -21.70463 -20.87289 -20.10976 -19.58131 -18.81238 -18.24858 -17.83566 -16.94620 -16.76986 -16.58735 -16.32124 -15.95022 -15.78588 -15.54194 -15.20982 -14.97186 -14.55727 -14.42509 -14.17191 -13.93671 -13.78343 -13.68641 -13.54427 -13.36482 -13.15552 -13.07038 -12.81226 -12.75422 -12.45981 -12.24696 -12.14104 -12.08544 -11.99584 -11.78498 -11.70039 -11.61346 -11.55925 -11.28149 -11.12501 -11.02348 -10.77855 -10.70556 -10.43172 -9.64857 -8.84895 -7.82155 -5.20006 1.33746 1.44726 1.45943 1.52266 1.55500 1.81588 1.98322 2.49938 2.98161 3.32507 3.38361 3.63653 3.64783 3.74188 3.84735 3.90670 3.95324 4.03353 4.14851 4.24698 4.26194 4.32082 4.46885 4.47180 4.47879 4.50526 4.63720 4.67721 4.76119 4.77461 4.86245 4.88560 4.93731 5.01113 5.02186 5.06905 5.08014 5.17401 5.20748 5.25494 5.34149 5.44302 5.49729 5.58407 5.65681 5.69340 5.87025 6.01021 6.25088 6.39814 6.59549 7.12385 7.12524 7.81713 8.45914 9.25202 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.035891 B = 0.001976 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.959295 B =14165.472802 C =14575.166141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.238 4.238 3 C 0.163 3.837 4 O -0.389 6.389 5 C 0.074 3.926 6 H 0.127 0.873 7 C -0.173 4.173 8 C 0.508 3.492 9 O -0.580 6.580 10 N -0.602 5.602 11 C 0.116 3.884 12 C -0.123 4.123 13 C -0.063 4.063 14 C -0.077 4.077 15 H 0.062 0.938 16 C -0.118 4.118 17 C 0.172 3.828 18 N -0.630 5.630 19 C -0.244 4.244 20 H 0.078 0.922 21 C -0.067 4.067 22 N -0.948 5.948 23 Si 0.975 3.025 24 H -0.287 1.287 25 H -0.270 1.270 26 H -0.293 1.293 27 C 0.135 3.865 28 C -0.127 4.127 29 C 0.098 3.902 30 H 0.251 0.749 31 H 0.103 0.897 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.022 0.978 44 H -0.011 1.011 45 H 0.246 0.754 46 H 0.026 0.974 47 H 0.030 0.970 48 H 0.066 0.934 49 H 0.097 0.903 50 H 0.092 0.908 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.406 -17.340 -6.358 28.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.238 4.238 3 C 0.088 3.912 4 O -0.309 6.309 5 C 0.014 3.986 6 H 0.145 0.855 7 C -0.230 4.230 8 C 0.296 3.704 9 O -0.460 6.460 10 N -0.336 5.336 11 C -0.006 4.006 12 C -0.161 4.161 13 C -0.082 4.082 14 C -0.097 4.097 15 H 0.080 0.920 16 C -0.156 4.156 17 C 0.047 3.953 18 N -0.356 5.356 19 C -0.373 4.373 20 H 0.095 0.905 21 C -0.260 4.260 22 N -0.597 5.597 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.195 1.195 26 H -0.219 1.219 27 C 0.010 3.990 28 C -0.165 4.165 29 C -0.024 4.024 30 H 0.267 0.733 31 H 0.121 0.879 32 H 0.113 0.887 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.040 0.960 44 H 0.007 0.993 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.049 0.951 48 H 0.085 0.915 49 H 0.116 0.884 50 H 0.110 0.890 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.774 -16.843 -5.930 28.160 hybrid contribution 1.037 1.119 0.515 1.611 sum -20.737 -15.724 -5.414 26.582 Atomic orbital electron populations 1.25874 0.96978 0.96970 0.98737 1.23198 0.95171 1.03100 1.02292 1.19493 0.84424 0.88761 0.98474 1.88079 1.20374 1.45528 1.76877 1.22062 0.82211 1.01621 0.92722 0.85539 1.22392 1.03318 1.00505 0.96797 1.21017 0.82195 0.80200 0.86938 1.90688 1.51364 1.48880 1.55044 1.48170 1.05905 1.50780 1.28740 1.21562 0.97452 0.94323 0.87287 1.21897 0.95313 0.97711 1.01156 1.21004 0.93117 0.96445 0.97676 1.22248 0.94261 0.97348 0.95832 0.91990 1.22721 0.93964 0.98180 1.00688 1.21055 0.93652 0.91518 0.89082 1.44837 1.15827 1.43581 1.31320 1.19452 1.00273 1.14263 1.03311 0.90451 1.25635 1.00510 1.02448 0.97445 1.70188 1.24582 1.50211 1.14742 0.85113 0.78110 0.78200 0.78246 1.21397 1.19478 1.21902 1.21844 0.84968 0.96491 0.95690 1.21993 0.98689 0.98797 0.97052 1.22242 0.88435 0.94832 0.96849 0.73320 0.87926 0.88705 0.88270 0.88709 0.93427 0.89877 0.91218 0.90856 0.92643 0.90103 0.90017 0.90518 0.95986 0.99275 0.94490 0.95573 0.95128 0.91534 0.88430 0.88989 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 19.25 74.32 1.43 -1.06 16 2 C -0.24 -4.24 13.73 31.12 0.43 -3.81 16 3 C 0.16 2.21 6.22 70.18 0.44 2.65 16 4 O -0.39 -8.28 9.49 -130.06 -1.23 -9.51 16 5 C 0.07 1.13 2.28 29.85 0.07 1.20 16 6 H 0.13 0.87 6.97 -2.39 -0.02 0.86 16 7 C -0.17 -1.96 9.16 71.98 0.66 -1.31 16 8 C 0.51 11.73 7.06 87.65 0.62 12.34 16 9 O -0.58 -19.78 15.95 15.90 0.25 -19.53 16 10 N -0.60 -10.94 2.97 -818.93 -2.43 -13.38 16 11 C 0.12 2.39 6.42 86.36 0.55 2.94 16 12 C -0.12 -2.65 5.24 30.67 0.16 -2.49 16 13 C -0.06 -1.31 1.68 -10.77 -0.02 -1.33 16 14 C -0.08 -2.34 2.58 -9.32 -0.02 -2.36 16 15 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 16 C -0.12 -3.81 5.27 31.78 0.17 -3.65 16 17 C 0.17 8.36 5.45 86.73 0.47 8.84 16 18 N -0.63 -32.51 3.39 -691.55 -2.35 -34.86 16 19 C -0.24 -13.93 10.26 84.03 0.86 -13.07 16 20 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 21 C -0.07 -3.89 5.45 84.86 0.46 -3.43 16 22 N -0.95 -57.64 10.46 21.65 0.23 -57.41 16 23 Si 0.97 46.38 29.56 68.60 2.03 48.41 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 C 0.13 5.32 5.95 86.93 0.52 5.84 16 28 C -0.13 -1.82 5.00 30.67 0.15 -1.66 16 29 C 0.10 1.04 5.58 86.36 0.48 1.52 16 30 H 0.25 1.61 7.80 -4.41 -0.03 1.57 16 31 H 0.10 0.77 7.79 -2.39 -0.02 0.75 16 32 H 0.10 0.84 8.09 -2.38 -0.02 0.82 16 33 H 0.10 0.77 5.39 -2.39 -0.01 0.75 16 34 H 0.09 0.66 7.79 -2.39 -0.02 0.64 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.07 1.75 7.03 -2.39 -0.02 1.73 16 38 H 0.07 1.69 7.45 -2.39 -0.02 1.67 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.08 1.61 8.07 -2.39 -0.02 1.59 16 41 H 0.08 2.28 8.09 -2.39 -0.02 2.26 16 42 H 0.08 2.18 8.04 -2.39 -0.02 2.16 16 43 H 0.02 1.23 6.87 -2.39 -0.02 1.21 16 44 H -0.01 -0.60 7.98 -2.38 -0.02 -0.62 16 45 H 0.25 14.50 8.31 -92.71 -0.77 13.72 16 46 H 0.03 1.00 7.99 -2.39 -0.02 0.98 16 47 H 0.03 1.22 8.04 -2.39 -0.02 1.20 16 48 H 0.07 1.02 7.81 -2.39 -0.02 1.01 16 49 H 0.10 1.18 7.21 -2.39 -0.02 1.16 16 50 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.12 0.57 4.39 -2.38 -0.01 0.56 16 Total: -1.00 -82.83 399.37 4.82 -78.01 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 0.90 Total: 7.12 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 7.43 Total: 1.15 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -4.55 Total: -105.65 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.98 Total: -29.04 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -82.83 4.82 -78.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733267589.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.807 kcal (2) G-P(sol) polarization free energy of solvation -82.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds