Wall clock time and date at job start Tue Mar 31 2020 18:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47067 * 2 1 4 4 C 1.36929 * 120.00685 * 263.92184 * 3 2 1 5 5 H 1.07997 * 120.00702 * 188.70860 * 4 3 2 6 6 C 1.38808 * 119.99750 * 8.70666 * 4 3 2 7 7 N 1.31618 * 120.00303 * 25.01199 * 6 4 3 8 8 Si 1.86802 * 120.00301 * 205.01260 * 6 4 3 9 9 H 1.48497 * 109.47441 * 84.98479 * 8 6 4 10 10 H 1.48504 * 109.47287 * 204.98934 * 8 6 4 11 11 H 1.48504 * 109.47102 * 324.98574 * 8 6 4 12 12 C 1.46511 * 119.99809 * 83.92190 * 3 2 1 13 13 C 1.53001 * 109.47106 * 270.00204 * 12 3 2 14 14 C 1.53039 * 109.46009 * 175.00046 * 13 12 3 15 15 C 1.53190 * 109.31569 * 181.38438 * 14 13 12 16 16 N 1.46924 * 108.77024 * 305.36538 * 15 14 13 17 17 C 1.34779 * 120.62965 * 233.58010 * 16 15 14 18 18 O 1.21289 * 119.99704 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00209 * 180.02562 * 17 16 15 20 20 C 1.50702 * 109.47222 * 180.02562 * 19 17 16 21 21 C 1.34516 * 125.78674 * 90.33936 * 20 19 17 22 22 C 1.41386 * 106.83778 * 180.11614 * 21 20 19 23 23 C 1.34511 * 106.84359 * 359.57596 * 22 21 20 24 24 C 1.50701 * 125.79202 * 180.29304 * 23 22 21 25 25 O 1.34302 * 125.79181 * 269.97988 * 20 19 17 26 26 C 1.46929 * 118.74494 * 53.85923 * 16 15 14 27 27 C 1.53042 * 109.45740 * 295.06725 * 13 12 3 28 28 H 1.08999 * 109.46964 * 59.99482 * 1 2 3 29 29 H 1.08996 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46824 * 299.99603 * 1 2 3 31 31 H 1.08997 * 109.47191 * 240.00763 * 2 1 3 32 32 H 1.08998 * 109.47298 * 120.00091 * 2 1 3 33 33 H 0.97001 * 120.00445 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.46832 * 149.99862 * 12 3 2 35 35 H 1.09006 * 109.46847 * 30.00045 * 12 3 2 36 36 H 1.08998 * 109.45954 * 55.02387 * 13 12 3 37 37 H 1.09001 * 109.50215 * 61.42747 * 14 13 12 38 38 H 1.09006 * 109.52265 * 301.35218 * 14 13 12 39 39 H 1.08993 * 109.59047 * 185.57684 * 15 14 13 40 40 H 1.09005 * 109.70151 * 65.21452 * 15 14 13 41 41 H 1.08999 * 109.47192 * 60.00610 * 19 17 16 42 42 H 1.08997 * 109.47134 * 300.00116 * 19 17 16 43 43 H 1.08004 * 126.58579 * 359.95823 * 21 20 19 44 44 H 1.08007 * 126.57889 * 179.83131 * 22 21 20 45 45 H 1.09006 * 109.46662 * 90.00558 * 24 23 22 46 46 H 1.09002 * 109.46733 * 209.99814 * 24 23 22 47 47 H 1.08991 * 109.47067 * 330.00555 * 24 23 22 48 48 H 1.09002 * 109.58166 * 65.92531 * 26 16 15 49 49 H 1.08990 * 109.58879 * 186.34886 * 26 16 15 50 50 H 1.08999 * 109.49673 * 298.56602 * 27 13 12 51 51 H 1.08992 * 109.49807 * 58.63060 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3649 1.9850 -1.1791 5 1 2.8551 2.9473 -1.1695 6 6 2.0864 1.3602 -2.3869 7 7 1.1035 0.4883 -2.4655 8 14 3.1064 1.7566 -3.9008 9 1 4.3285 0.9131 -3.9090 10 1 2.3072 1.4821 -5.1220 11 1 3.4943 3.1898 -3.8749 12 6 2.1358 2.1166 1.2617 13 6 0.8243 2.8507 1.5482 14 6 0.9026 3.5163 2.9240 15 6 -0.4244 4.2211 3.2222 16 7 -0.7267 5.1455 2.1209 17 6 -0.9891 6.4444 2.3671 18 8 -0.9768 6.8602 3.5064 19 6 -1.2980 7.3800 1.2269 20 6 -1.5517 8.7638 1.7671 21 6 -0.6234 9.7207 1.9463 22 6 -1.2944 10.8490 2.4715 23 6 -2.5940 10.5173 2.5730 24 6 -3.6951 11.4125 3.0802 25 8 -2.7440 9.2531 2.1450 26 6 -0.7435 4.6259 0.7467 27 6 0.5926 3.9177 0.4758 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.9085 0.0520 -3.3096 34 1 2.9480 2.8396 1.1865 35 1 2.3454 1.4176 2.0715 36 1 -0.0007 2.1385 1.5357 37 1 1.7117 4.2467 2.9294 38 1 1.0913 2.7589 3.6849 39 1 -0.3405 4.7789 4.1549 40 1 -1.2215 3.4826 3.3085 41 1 -2.1836 7.0282 0.6979 42 1 -0.4518 7.4079 0.5404 43 1 0.4323 9.6415 1.7326 44 1 -0.8495 11.7969 2.7361 45 1 -4.1225 11.9704 2.2469 46 1 -4.4708 10.8054 3.5470 47 1 -3.2884 12.1090 3.8132 48 1 -1.5648 3.9182 0.6337 49 1 -0.8701 5.4508 0.0457 50 1 1.4046 4.6443 0.5042 51 1 0.5609 3.4458 -0.5061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733917554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:00 Heat of formation + Delta-G solvation = -0.674226 kcal Electronic energy + Delta-G solvation = -29644.173009 eV Core-core repulsion = 25738.949044 eV Total energy + Delta-G solvation = -3905.223965 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.65934 -40.04193 -37.71610 -35.80520 -33.43912 -33.23595 -32.87729 -31.17704 -30.76447 -29.83819 -29.18475 -26.74889 -25.22344 -23.97659 -22.88791 -22.32780 -21.84061 -20.69028 -20.19176 -19.78337 -18.81730 -17.30839 -16.74029 -16.62348 -16.04570 -15.49593 -15.43345 -14.98284 -14.43900 -14.08835 -13.90667 -13.70089 -13.59664 -13.44689 -13.26313 -13.14795 -13.04066 -12.87543 -12.81320 -12.54767 -12.22064 -12.16676 -11.81991 -11.71541 -11.60479 -11.32480 -11.01874 -10.93379 -10.83209 -10.65398 -10.25852 -10.20647 -10.10609 -9.93336 -9.76660 -9.63526 -9.54273 -9.25131 -8.49469 -8.33924 -8.32916 -6.87355 -5.78027 -3.07154 1.60244 2.50980 2.62498 2.75819 3.19735 3.37442 3.45443 3.47182 4.40224 4.49186 4.56734 4.74543 4.93948 4.96141 5.05978 5.15994 5.17226 5.19751 5.26400 5.29527 5.34923 5.45664 5.46620 5.48821 5.67520 5.72101 5.75506 5.84931 5.89768 5.97921 6.06281 6.17286 6.18116 6.33393 6.46341 6.48001 6.53557 6.59996 6.65441 6.68835 6.86796 6.96039 7.10169 7.13163 7.14538 7.22065 7.48426 7.65933 7.77310 8.08030 8.19834 8.36035 9.24123 9.88228 10.33975 11.25781 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.002622 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.929302 B =10678.181779 C =11616.030660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.167 3.833 3 N -0.597 5.597 4 C -0.241 4.241 5 H 0.072 0.928 6 C -0.004 4.004 7 N -0.895 5.895 8 Si 0.890 3.110 9 H -0.291 1.291 10 H -0.294 1.294 11 H -0.283 1.283 12 C 0.157 3.843 13 C -0.110 4.110 14 C -0.129 4.129 15 C 0.115 3.885 16 N -0.605 5.605 17 C 0.515 3.485 18 O -0.542 6.542 19 C -0.062 4.062 20 C 0.009 3.991 21 C -0.194 4.194 22 C -0.211 4.211 23 C -0.017 4.017 24 C -0.071 4.071 25 O -0.171 6.171 26 C 0.102 3.898 27 C -0.121 4.121 28 H 0.090 0.910 29 H 0.016 0.984 30 H 0.013 0.987 31 H 0.086 0.914 32 H 0.000 1.000 33 H 0.251 0.749 34 H 0.042 0.958 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.053 0.947 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.981 14.329 8.562 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.042 3.958 3 N -0.318 5.318 4 C -0.370 4.370 5 H 0.090 0.910 6 C -0.201 4.201 7 N -0.541 5.541 8 Si 0.721 3.279 9 H -0.218 1.218 10 H -0.221 1.221 11 H -0.208 1.208 12 C 0.030 3.970 13 C -0.131 4.131 14 C -0.168 4.168 15 C -0.008 4.008 16 N -0.338 5.338 17 C 0.303 3.697 18 O -0.419 6.419 19 C -0.101 4.101 20 C -0.041 4.041 21 C -0.214 4.214 22 C -0.230 4.230 23 C -0.067 4.067 24 C -0.128 4.128 25 O -0.068 6.068 26 C -0.020 4.020 27 C -0.159 4.159 28 H 0.108 0.892 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.104 0.896 32 H 0.018 0.982 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.129 0.871 42 H 0.143 0.857 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.105 0.895 48 H 0.088 0.912 49 H 0.096 0.904 50 H 0.072 0.928 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.277 14.281 8.998 18.381 hybrid contribution 0.638 0.184 -0.928 1.141 sum -6.639 14.465 8.070 17.845 Atomic orbital electron populations 1.22399 0.99406 0.98043 1.00989 1.20763 0.92404 0.84642 0.98015 1.44210 1.75753 1.10151 1.01703 1.19190 1.30817 1.03462 0.83527 0.91028 1.24678 0.98053 1.00189 0.97145 1.70142 1.27057 1.32160 1.24762 0.86474 0.80623 0.77776 0.83013 1.21804 1.22109 1.20850 1.20805 0.93861 0.93850 0.88530 1.21977 1.02052 0.97064 0.92043 1.21981 0.96438 0.99473 0.98870 1.21592 0.97283 0.91874 0.90006 1.48183 1.68755 1.08012 1.08866 1.20307 0.77017 0.82365 0.90041 1.90703 1.52171 1.76073 1.22990 1.20159 1.05182 0.87405 0.97369 1.21482 0.82954 0.95641 1.04022 1.21495 1.00212 0.93545 1.06118 1.21513 0.93080 1.00734 1.07638 1.22373 0.96906 0.83841 1.03595 1.20276 0.94926 0.96415 1.01179 1.83916 1.33036 1.26134 1.63738 1.22086 1.00220 0.98778 0.80899 1.22012 0.94157 0.97273 1.02417 0.89183 0.96496 0.96774 0.89623 0.98210 0.93884 0.93979 0.94566 0.91045 0.92071 0.91333 0.89699 0.91806 0.87114 0.85697 0.83586 0.83625 0.90250 0.90641 0.89460 0.91178 0.90382 0.92829 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.53 37.16 0.35 -2.86 16 2 C 0.17 3.80 5.64 -4.04 -0.02 3.77 16 3 N -0.60 -13.43 2.41 -173.24 -0.42 -13.84 16 4 C -0.24 -5.91 7.60 -15.06 -0.11 -6.02 16 5 H 0.07 1.75 7.93 -52.49 -0.42 1.33 16 6 C 0.00 -0.09 4.89 -17.43 -0.09 -0.18 16 7 N -0.90 -23.44 8.59 55.49 0.48 -22.96 16 8 Si 0.89 20.55 29.62 -169.99 -5.04 15.51 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.16 2.94 5.21 -4.04 -0.02 2.92 16 13 C -0.11 -1.79 2.28 -90.58 -0.21 -1.99 16 14 C -0.13 -1.79 5.36 -26.61 -0.14 -1.93 16 15 C 0.11 1.58 6.43 -3.71 -0.02 1.55 16 16 N -0.60 -8.37 2.97 -172.51 -0.51 -8.88 16 17 C 0.52 7.56 7.69 -10.99 -0.08 7.47 16 18 O -0.54 -9.90 15.45 5.55 0.09 -9.81 16 19 C -0.06 -0.72 4.58 -29.04 -0.13 -0.85 16 20 C 0.01 0.13 5.81 -35.62 -0.21 -0.08 16 21 C -0.19 -2.49 10.81 -39.70 -0.43 -2.92 16 22 C -0.21 -2.46 10.81 -39.70 -0.43 -2.89 16 23 C -0.02 -0.20 7.32 -35.63 -0.26 -0.46 16 24 C -0.07 -0.52 10.42 36.01 0.38 -0.15 16 25 O -0.17 -2.41 10.65 5.70 0.06 -2.35 16 26 C 0.10 1.35 6.37 -3.49 -0.02 1.33 16 27 C -0.12 -1.94 4.97 -26.39 -0.13 -2.07 16 28 H 0.09 2.19 6.31 -51.93 -0.33 1.86 16 29 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.01 0.27 5.92 -51.93 -0.31 -0.04 16 31 H 0.09 2.20 5.87 -51.93 -0.30 1.89 16 32 H 0.00 -0.01 7.98 -51.93 -0.41 -0.42 16 33 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 34 H 0.04 0.79 8.03 -51.93 -0.42 0.38 16 35 H 0.04 0.65 7.95 -51.93 -0.41 0.23 16 36 H 0.07 1.26 5.75 -51.93 -0.30 0.97 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.23 7.00 -51.93 -0.36 0.86 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.11 1.08 7.93 -51.93 -0.41 0.66 16 42 H 0.13 1.18 7.70 -51.93 -0.40 0.78 16 43 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 44 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.08 0.85 5.93 -51.93 -0.31 0.54 16 50 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.11 2.13 6.26 -51.93 -0.32 1.81 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -29.77 395.02 -9.47 -39.23 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -8.49 Total: 2.50 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.58 Total: -5.35 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.45 Total: -45.69 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.15 Total: -12.16 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.04 Total: 15.51 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.77 -9.47 -39.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733917554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.558 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds