Wall clock time and date at job start Tue Mar 31 2020 18:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47067 * 2 1 4 4 C 1.36929 * 120.00685 * 263.92184 * 3 2 1 5 5 H 1.07997 * 120.00702 * 188.70860 * 4 3 2 6 6 C 1.38808 * 119.99750 * 8.70666 * 4 3 2 7 7 N 1.31618 * 120.00303 * 25.01199 * 6 4 3 8 8 Si 1.86802 * 120.00301 * 205.01260 * 6 4 3 9 9 H 1.48497 * 109.47441 * 84.98479 * 8 6 4 10 10 H 1.48504 * 109.47287 * 204.98934 * 8 6 4 11 11 H 1.48504 * 109.47102 * 324.98574 * 8 6 4 12 12 C 1.46511 * 119.99809 * 83.92190 * 3 2 1 13 13 C 1.53001 * 109.47106 * 270.00204 * 12 3 2 14 14 C 1.53039 * 109.46009 * 175.00046 * 13 12 3 15 15 C 1.53190 * 109.31569 * 181.38438 * 14 13 12 16 16 N 1.46924 * 108.77024 * 305.36538 * 15 14 13 17 17 C 1.34779 * 120.62965 * 233.58010 * 16 15 14 18 18 O 1.21289 * 119.99704 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00209 * 180.02562 * 17 16 15 20 20 C 1.50702 * 109.47222 * 180.02562 * 19 17 16 21 21 C 1.34516 * 125.78674 * 90.33936 * 20 19 17 22 22 C 1.41386 * 106.83778 * 180.11614 * 21 20 19 23 23 C 1.34511 * 106.84359 * 359.57596 * 22 21 20 24 24 C 1.50701 * 125.79202 * 180.29304 * 23 22 21 25 25 O 1.34302 * 125.79181 * 269.97988 * 20 19 17 26 26 C 1.46929 * 118.74494 * 53.85923 * 16 15 14 27 27 C 1.53042 * 109.45740 * 295.06725 * 13 12 3 28 28 H 1.08999 * 109.46964 * 59.99482 * 1 2 3 29 29 H 1.08996 * 109.47376 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46824 * 299.99603 * 1 2 3 31 31 H 1.08997 * 109.47191 * 240.00763 * 2 1 3 32 32 H 1.08998 * 109.47298 * 120.00091 * 2 1 3 33 33 H 0.97001 * 120.00445 * 179.97438 * 7 6 4 34 34 H 1.08995 * 109.46832 * 149.99862 * 12 3 2 35 35 H 1.09006 * 109.46847 * 30.00045 * 12 3 2 36 36 H 1.08998 * 109.45954 * 55.02387 * 13 12 3 37 37 H 1.09001 * 109.50215 * 61.42747 * 14 13 12 38 38 H 1.09006 * 109.52265 * 301.35218 * 14 13 12 39 39 H 1.08993 * 109.59047 * 185.57684 * 15 14 13 40 40 H 1.09005 * 109.70151 * 65.21452 * 15 14 13 41 41 H 1.08999 * 109.47192 * 60.00610 * 19 17 16 42 42 H 1.08997 * 109.47134 * 300.00116 * 19 17 16 43 43 H 1.08004 * 126.58579 * 359.95823 * 21 20 19 44 44 H 1.08007 * 126.57889 * 179.83131 * 22 21 20 45 45 H 1.09006 * 109.46662 * 90.00558 * 24 23 22 46 46 H 1.09002 * 109.46733 * 209.99814 * 24 23 22 47 47 H 1.08991 * 109.47067 * 330.00555 * 24 23 22 48 48 H 1.09002 * 109.58166 * 65.92531 * 26 16 15 49 49 H 1.08990 * 109.58879 * 186.34886 * 26 16 15 50 50 H 1.08999 * 109.49673 * 298.56602 * 27 13 12 51 51 H 1.08992 * 109.49807 * 58.63060 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3649 1.9850 -1.1791 5 1 2.8551 2.9473 -1.1695 6 6 2.0864 1.3602 -2.3869 7 7 1.1035 0.4883 -2.4655 8 14 3.1064 1.7566 -3.9008 9 1 4.3285 0.9131 -3.9090 10 1 2.3072 1.4821 -5.1220 11 1 3.4943 3.1898 -3.8749 12 6 2.1358 2.1166 1.2617 13 6 0.8243 2.8507 1.5482 14 6 0.9026 3.5163 2.9240 15 6 -0.4244 4.2211 3.2222 16 7 -0.7267 5.1455 2.1209 17 6 -0.9891 6.4444 2.3671 18 8 -0.9768 6.8602 3.5064 19 6 -1.2980 7.3800 1.2269 20 6 -1.5517 8.7638 1.7671 21 6 -0.6234 9.7207 1.9463 22 6 -1.2944 10.8490 2.4715 23 6 -2.5940 10.5173 2.5730 24 6 -3.6951 11.4125 3.0802 25 8 -2.7440 9.2531 2.1450 26 6 -0.7435 4.6259 0.7467 27 6 0.5926 3.9177 0.4758 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.9085 0.0520 -3.3096 34 1 2.9480 2.8396 1.1865 35 1 2.3454 1.4176 2.0715 36 1 -0.0007 2.1385 1.5357 37 1 1.7117 4.2467 2.9294 38 1 1.0913 2.7589 3.6849 39 1 -0.3405 4.7789 4.1549 40 1 -1.2215 3.4826 3.3085 41 1 -2.1836 7.0282 0.6979 42 1 -0.4518 7.4079 0.5404 43 1 0.4323 9.6415 1.7326 44 1 -0.8495 11.7969 2.7361 45 1 -4.1225 11.9704 2.2469 46 1 -4.4708 10.8054 3.5470 47 1 -3.2884 12.1090 3.8132 48 1 -1.5648 3.9182 0.6337 49 1 -0.8701 5.4508 0.0457 50 1 1.4046 4.6443 0.5042 51 1 0.5609 3.4458 -0.5061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733917554.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:58 Heat of formation + Delta-G solvation = -14.878008 kcal Electronic energy + Delta-G solvation = -29644.788931 eV Core-core repulsion = 25738.949044 eV Total energy + Delta-G solvation = -3905.839887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.56482 -41.20311 -39.09123 -37.37063 -34.66939 -34.16098 -33.93718 -32.72701 -32.07941 -30.94748 -30.65570 -28.18850 -26.24738 -25.51217 -24.07362 -23.78476 -22.78559 -22.12717 -21.44099 -20.99354 -19.98544 -18.50695 -18.36939 -17.66350 -17.01560 -16.84895 -16.54428 -16.47330 -15.72739 -15.37139 -15.29523 -15.09111 -14.83005 -14.62387 -14.44951 -14.17712 -13.97011 -13.77285 -13.75321 -13.71474 -13.53788 -13.46269 -13.11088 -12.99059 -12.95964 -12.69630 -12.60205 -12.52332 -12.35073 -12.12237 -11.90653 -11.79028 -11.62500 -11.32217 -11.17968 -10.94566 -10.88436 -10.78241 -10.22560 -9.66027 -9.22000 -8.70144 -7.70408 -4.98495 0.68984 1.51303 1.52462 1.57641 1.60473 1.60798 1.88262 2.16394 2.61654 3.38509 3.48285 3.61680 3.72598 3.93411 3.96166 4.08637 4.10919 4.18804 4.21603 4.24956 4.36336 4.44195 4.54173 4.58098 4.62943 4.70984 4.75225 4.82814 4.84901 4.89139 4.90337 4.93869 5.05308 5.06385 5.12844 5.14384 5.22443 5.24099 5.27524 5.31467 5.41706 5.46350 5.63644 5.69836 5.74769 5.78567 5.91589 6.20259 6.25261 6.36628 6.46474 7.07845 7.32873 8.05385 8.46481 9.31644 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.002622 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.929302 B =10678.181779 C =11616.030660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.168 3.832 3 N -0.608 5.608 4 C -0.231 4.231 5 H 0.071 0.929 6 C -0.049 4.049 7 N -0.914 5.914 8 Si 0.940 3.060 9 H -0.299 1.299 10 H -0.303 1.303 11 H -0.275 1.275 12 C 0.154 3.846 13 C -0.100 4.100 14 C -0.116 4.116 15 C 0.114 3.886 16 N -0.602 5.602 17 C 0.514 3.486 18 O -0.582 6.582 19 C -0.057 4.057 20 C -0.015 4.015 21 C -0.207 4.207 22 C -0.226 4.226 23 C -0.026 4.026 24 C -0.071 4.071 25 O -0.193 6.193 26 C 0.110 3.890 27 C -0.114 4.114 28 H 0.061 0.939 29 H 0.024 0.976 30 H 0.029 0.971 31 H 0.054 0.946 32 H 0.016 0.984 33 H 0.242 0.758 34 H 0.040 0.960 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.131 0.869 42 H 0.148 0.852 43 H 0.156 0.844 44 H 0.168 0.832 45 H 0.097 0.903 46 H 0.077 0.923 47 H 0.106 0.894 48 H 0.072 0.928 49 H 0.105 0.895 50 H 0.051 0.949 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.360 15.750 9.373 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.043 3.957 3 N -0.329 5.329 4 C -0.361 4.361 5 H 0.088 0.912 6 C -0.244 4.244 7 N -0.562 5.562 8 Si 0.771 3.229 9 H -0.227 1.227 10 H -0.231 1.231 11 H -0.201 1.201 12 C 0.028 3.972 13 C -0.120 4.120 14 C -0.155 4.155 15 C -0.008 4.008 16 N -0.335 5.335 17 C 0.303 3.697 18 O -0.462 6.462 19 C -0.096 4.096 20 C -0.065 4.065 21 C -0.226 4.226 22 C -0.245 4.245 23 C -0.076 4.076 24 C -0.127 4.127 25 O -0.091 6.091 26 C -0.012 4.012 27 C -0.152 4.152 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.149 0.851 42 H 0.166 0.834 43 H 0.174 0.826 44 H 0.186 0.814 45 H 0.116 0.884 46 H 0.095 0.905 47 H 0.125 0.875 48 H 0.090 0.910 49 H 0.123 0.877 50 H 0.070 0.930 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.644 15.712 9.818 20.042 hybrid contribution 0.792 -0.231 -1.096 1.372 sum -6.852 15.481 8.722 19.044 Atomic orbital electron populations 1.22166 0.98488 0.98339 1.00237 1.20647 0.93107 0.84770 0.97170 1.44343 1.75850 1.10370 1.02382 1.19317 1.29468 1.03039 0.84273 0.91156 1.25160 0.99084 1.01110 0.99012 1.70280 1.28088 1.33339 1.24458 0.85682 0.78927 0.77633 0.80654 1.22745 1.23066 1.20055 1.20944 0.95045 0.93999 0.87200 1.21756 0.99945 0.96781 0.93568 1.21856 0.96479 0.99575 0.97607 1.21595 0.97419 0.91935 0.89843 1.48224 1.68257 1.07973 1.09019 1.20802 0.76032 0.82583 0.90240 1.90682 1.54029 1.76721 1.24817 1.20244 1.06938 0.86014 0.96434 1.21828 0.83093 0.96547 1.05062 1.21828 1.00798 0.94050 1.05963 1.21882 0.93266 1.01488 1.07830 1.23232 0.98321 0.83436 1.02630 1.20479 0.93908 0.96098 1.02236 1.83905 1.33592 1.27300 1.64259 1.22041 0.98454 0.99609 0.81114 1.21836 0.95820 0.97118 1.00421 0.92058 0.95660 0.95197 0.92795 0.96590 0.94813 0.94167 0.93388 0.92139 0.92371 0.89734 0.90345 0.90881 0.85102 0.83437 0.82623 0.81421 0.88435 0.90455 0.87500 0.90956 0.87700 0.93001 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 9.53 71.98 0.69 -4.96 16 2 C 0.17 7.59 5.64 86.38 0.49 8.07 16 3 N -0.61 -26.99 2.41 -701.99 -1.69 -28.69 16 4 C -0.23 -11.29 7.60 84.03 0.64 -10.65 16 5 H 0.07 3.41 7.93 -2.91 -0.02 3.38 16 6 C -0.05 -2.50 4.89 84.86 0.42 -2.09 16 7 N -0.91 -48.67 8.59 21.65 0.19 -48.49 16 8 Si 0.94 42.64 29.62 68.60 2.03 44.67 16 9 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 10 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 C 0.15 5.54 5.21 86.38 0.45 5.99 16 13 C -0.10 -3.07 2.28 -10.77 -0.02 -3.09 16 14 C -0.12 -2.98 5.36 30.67 0.16 -2.82 16 15 C 0.11 2.94 6.43 86.36 0.56 3.49 16 16 N -0.60 -15.57 2.97 -818.08 -2.43 -18.00 16 17 C 0.51 14.36 7.69 87.66 0.67 15.04 16 18 O -0.58 -20.93 15.45 -3.06 -0.05 -20.98 16 19 C -0.06 -1.23 4.58 29.10 0.13 -1.09 16 20 C -0.02 -0.40 5.81 24.83 0.14 -0.26 16 21 C -0.21 -5.11 10.81 22.19 0.24 -4.87 16 22 C -0.23 -4.99 10.81 22.19 0.24 -4.75 16 23 C -0.03 -0.59 7.32 24.83 0.18 -0.41 16 24 C -0.07 -0.90 10.42 71.24 0.74 -0.16 16 25 O -0.19 -5.29 10.65 -2.52 -0.03 -5.31 16 26 C 0.11 2.67 6.37 86.51 0.55 3.23 16 27 C -0.11 -3.51 4.97 30.82 0.15 -3.35 16 28 H 0.06 2.99 6.31 -2.39 -0.02 2.97 16 29 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.03 1.14 5.92 -2.39 -0.01 1.12 16 31 H 0.05 2.79 5.87 -2.39 -0.01 2.78 16 32 H 0.02 0.66 7.98 -2.39 -0.02 0.64 16 33 H 0.24 12.91 8.31 -92.71 -0.77 12.14 16 34 H 0.04 1.46 8.03 -2.39 -0.02 1.44 16 35 H 0.05 1.61 7.95 -2.38 -0.02 1.59 16 36 H 0.06 2.03 5.75 -2.39 -0.01 2.02 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.08 2.17 7.00 -2.39 -0.02 2.15 16 40 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.13 2.24 7.93 -2.39 -0.02 2.22 16 42 H 0.15 2.42 7.70 -2.39 -0.02 2.40 16 43 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 44 H 0.17 2.74 8.06 -2.91 -0.02 2.71 16 45 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 47 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.10 2.00 5.93 -2.39 -0.01 1.99 16 50 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.07 2.86 6.26 -2.39 -0.01 2.85 16 Total: -1.00 -64.84 395.02 5.36 -59.47 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.91 Total: 20.01 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 6.43 Total: -2.68 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -3.93 Total: -95.17 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -0.07 Total: -26.30 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -64.84 5.36 -59.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733917554.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.594 kcal (2) G-P(sol) polarization free energy of solvation -64.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds