Wall clock time and date at job start Tue Mar 31 2020 17:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47278 * 2 1 4 4 C 1.53003 * 109.47220 * 240.00579 * 2 1 3 5 5 N 1.46497 * 109.47414 * 185.00238 * 4 2 1 6 6 C 1.34778 * 120.00109 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99656 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99992 * 179.97438 * 6 5 4 9 9 H 1.09007 * 109.47161 * 54.99412 * 8 6 5 10 10 C 1.53000 * 109.47062 * 294.99873 * 8 6 5 11 11 O 1.42900 * 109.47163 * 174.99602 * 8 6 5 12 12 C 1.42897 * 114.00276 * 209.99731 * 11 8 6 13 13 C 1.52991 * 109.47386 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47501 * 180.02562 * 13 12 11 15 15 C 1.38230 * 120.00074 * 269.73178 * 14 13 12 16 16 C 1.38239 * 119.99902 * 179.76798 * 15 14 13 17 17 C 1.38233 * 119.99690 * 0.47691 * 16 15 14 18 18 C 1.38232 * 120.00552 * 359.79427 * 17 16 15 19 19 C 1.38234 * 119.99565 * 359.95910 * 18 17 16 20 20 N 1.46498 * 109.47649 * 120.00012 * 2 1 3 21 21 C 1.46503 * 119.99365 * 59.99693 * 20 2 1 22 22 C 1.36931 * 120.00180 * 240.00143 * 20 2 1 23 23 H 1.07995 * 120.00477 * 23.11944 * 22 20 2 24 24 C 1.38812 * 119.99894 * 203.11351 * 22 20 2 25 25 N 1.31619 * 120.00015 * 11.69164 * 24 22 20 26 26 Si 1.86801 * 120.00332 * 191.68616 * 24 22 20 27 27 H 1.48495 * 109.46923 * 90.00195 * 26 24 22 28 28 H 1.48493 * 109.47293 * 210.00479 * 26 24 22 29 29 H 1.48502 * 109.46678 * 330.00555 * 26 24 22 30 30 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46622 * 299.99857 * 1 2 3 32 32 H 1.09000 * 109.47298 * 59.99726 * 1 2 3 33 33 H 1.08993 * 109.47251 * 64.99117 * 4 2 1 34 34 H 1.09009 * 109.46324 * 304.99764 * 4 2 1 35 35 H 0.97002 * 119.99879 * 359.97438 * 5 4 2 36 36 H 1.08998 * 109.47341 * 299.99866 * 10 8 6 37 37 H 1.08999 * 109.47332 * 60.00393 * 10 8 6 38 38 H 1.09004 * 109.46882 * 179.97438 * 10 8 6 39 39 H 1.09002 * 109.47042 * 300.00723 * 12 11 8 40 40 H 1.09008 * 109.46872 * 60.00008 * 12 11 8 41 41 H 1.09005 * 109.47084 * 300.00480 * 13 12 11 42 42 H 1.09008 * 109.47181 * 60.00108 * 13 12 11 43 43 H 1.08005 * 120.00292 * 359.97438 * 15 14 13 44 44 H 1.08003 * 120.00084 * 180.25499 * 16 15 14 45 45 H 1.08010 * 119.99547 * 179.77517 * 17 16 15 46 46 H 1.07999 * 120.00321 * 179.97438 * 18 17 16 47 47 H 1.08002 * 120.00169 * 180.02562 * 19 18 17 48 48 H 1.08998 * 109.46833 * 93.94397 * 21 20 2 49 49 H 1.09002 * 109.46929 * 213.93890 * 21 20 2 50 50 H 1.08991 * 109.47477 * 333.94099 * 21 20 2 51 51 H 0.97001 * 120.00211 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4291 -2.1909 7 8 3.5698 -1.8847 -3.1392 8 6 5.6749 -1.5368 -2.1308 9 1 5.9675 -2.0209 -1.1990 10 6 6.2895 -0.1370 -2.1930 11 8 6.1416 -2.3115 -3.2372 12 6 7.3427 -3.0388 -2.9720 13 6 7.7475 -3.8271 -4.2192 14 6 9.0139 -4.5946 -3.9394 15 6 10.2432 -4.0165 -4.1949 16 6 11.4049 -4.7187 -3.9338 17 6 11.3370 -6.0028 -3.4263 18 6 10.1076 -6.5830 -3.1760 19 6 8.9460 -5.8788 -3.4324 20 7 2.0185 -0.6906 1.1961 21 6 1.6645 -2.0932 1.4279 22 6 2.8057 -0.0251 2.0974 23 1 2.7708 1.0529 2.1525 24 6 3.6487 -0.7361 2.9405 25 7 3.8674 -2.0162 2.7259 26 14 4.4730 0.1237 4.3795 27 1 3.6016 0.0285 5.5781 28 1 5.7777 -0.5262 4.6631 29 1 4.6949 1.5526 4.0410 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.7516 -0.1582 -2.1370 34 1 1.6054 -1.7198 -1.2952 35 1 3.9825 -0.4622 -0.4320 36 1 5.9970 0.3472 -3.1247 37 1 5.9336 0.4539 -1.3491 38 1 7.3759 -0.2149 -2.1491 39 1 8.1386 -2.3422 -2.7086 40 1 7.1748 -3.7283 -2.1445 41 1 6.9516 -4.5236 -4.4830 42 1 7.9155 -3.1373 -5.0464 43 1 10.2962 -3.0148 -4.5955 44 1 12.3655 -4.2655 -4.1295 45 1 12.2446 -6.5528 -3.2257 46 1 10.0546 -7.5864 -2.7800 47 1 7.9854 -6.3320 -3.2365 48 1 2.4508 -2.7363 1.0328 49 1 1.5554 -2.2683 2.4982 50 1 0.7241 -2.3184 0.9252 51 1 4.4567 -2.5129 3.3148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734059503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:16 Heat of formation + Delta-G solvation = -45.933421 kcal Electronic energy + Delta-G solvation = -28836.082142 eV Core-core repulsion = 24928.895591 eV Total energy + Delta-G solvation = -3907.186551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.66506 -39.33876 -37.62254 -36.53519 -33.75383 -33.64850 -32.21513 -31.09221 -30.97064 -29.28981 -28.46354 -26.07902 -25.92258 -24.10686 -23.25865 -22.78616 -22.75434 -21.10270 -19.72162 -19.28174 -17.15962 -16.97485 -16.75883 -16.63028 -15.90715 -15.38341 -15.27069 -15.09733 -14.84197 -14.57214 -14.08370 -13.92856 -13.60675 -13.34836 -13.21222 -13.01143 -12.75193 -12.71548 -12.62136 -12.27515 -12.16132 -12.00569 -11.89501 -11.62383 -11.43180 -11.24292 -11.12956 -11.07693 -10.93749 -10.84995 -10.72195 -10.42897 -10.31570 -9.90275 -9.81592 -9.72628 -9.12915 -9.05220 -8.91319 -8.63820 -8.33781 -6.84859 -5.80283 -3.28492 1.12217 1.19582 3.16108 3.23687 3.31087 3.38473 3.39530 3.60605 4.19357 4.40589 4.63453 4.71806 4.82811 4.93876 4.98266 5.04127 5.18398 5.22847 5.31079 5.32534 5.33877 5.36247 5.39491 5.41392 5.59964 5.67041 5.71216 5.81305 5.81972 5.89454 5.95311 5.99399 6.08588 6.15470 6.19510 6.25694 6.30711 6.35953 6.39415 6.45266 6.68443 6.80009 6.80014 6.89562 7.11134 7.24556 7.36975 7.69382 7.75385 8.23584 8.31150 8.84187 9.15356 9.78398 10.28563 11.22599 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011670 B = 0.002618 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.708632 B =10693.735979 C =12019.434283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 H 0.068 0.932 4 C 0.110 3.890 5 N -0.698 5.698 6 C 0.513 3.487 7 O -0.544 6.544 8 C 0.072 3.928 9 H 0.089 0.911 10 C -0.167 4.167 11 O -0.359 6.359 12 C 0.066 3.934 13 C -0.079 4.079 14 C -0.079 4.079 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.125 4.125 18 C -0.119 4.119 19 C -0.114 4.114 20 N -0.594 5.594 21 C 0.163 3.837 22 C -0.260 4.260 23 H 0.068 0.932 24 C 0.005 3.995 25 N -0.902 5.902 26 Si 0.902 3.098 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.280 1.280 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.414 0.586 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.028 0.972 49 H 0.042 0.958 50 H -0.002 1.002 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.816 -2.877 -11.342 15.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.049 3.951 3 H 0.087 0.913 4 C -0.017 4.017 5 N -0.350 5.350 6 C 0.297 3.703 7 O -0.422 6.422 8 C 0.011 3.989 9 H 0.106 0.894 10 C -0.225 4.225 11 O -0.277 6.277 12 C -0.011 4.011 13 C -0.116 4.116 14 C -0.079 4.079 15 C -0.133 4.133 16 C -0.139 4.139 17 C -0.143 4.143 18 C -0.137 4.137 19 C -0.132 4.132 20 N -0.317 5.317 21 C 0.019 3.981 22 C -0.389 4.389 23 H 0.085 0.915 24 C -0.194 4.194 25 N -0.546 5.546 26 Si 0.732 3.268 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.251 0.749 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.047 0.953 49 H 0.060 0.940 50 H 0.017 0.983 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.389 -3.332 -12.077 16.275 hybrid contribution 0.931 0.411 1.616 1.910 sum 11.319 -2.922 -10.461 15.688 Atomic orbital electron populations 1.22171 0.97493 1.01470 1.00646 1.20653 0.92595 0.95875 0.85951 0.91335 1.21928 0.79859 1.00979 0.98897 1.45756 1.08074 1.58285 1.22914 1.20178 0.88747 0.78452 0.82903 1.90646 1.69932 1.47815 1.33814 1.21878 0.92521 0.93366 0.91154 0.89352 1.22200 1.01281 0.95549 1.03480 1.87975 1.41378 1.62634 1.35707 1.22513 0.86996 0.94326 0.97263 1.20460 0.94539 0.98730 0.97855 1.19778 0.94551 0.94632 0.98959 1.21103 0.91951 0.99931 1.00335 1.21148 0.98252 0.94937 0.99514 1.21163 0.97748 0.95622 0.99807 1.21172 0.92531 1.00008 0.99975 1.21159 0.98780 0.94324 0.98888 1.43942 1.57874 1.09667 1.20235 1.20751 0.93951 0.84493 0.98940 1.19222 1.15968 0.91146 1.12595 0.91456 1.25014 0.97918 0.96135 1.00292 1.70080 1.38985 1.07356 1.38216 0.86309 0.78656 0.78776 0.83078 1.21582 1.21826 1.20525 0.92947 0.92442 0.93545 0.92879 0.92448 0.74895 0.91438 0.90536 0.91671 0.93168 0.92945 0.89854 0.90038 0.85953 0.86104 0.86213 0.86011 0.85784 0.95340 0.93951 0.98313 0.93744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 9.18 37.16 0.34 -2.25 16 2 C 0.16 2.97 2.87 -67.93 -0.19 2.78 16 3 H 0.07 1.27 7.87 -51.93 -0.41 0.86 16 4 C 0.11 2.05 4.97 -4.04 -0.02 2.03 16 5 N -0.70 -13.32 5.35 -60.30 -0.32 -13.65 16 6 C 0.51 9.98 7.18 -10.99 -0.08 9.90 16 7 O -0.54 -12.37 16.51 -14.30 -0.24 -12.60 16 8 C 0.07 1.17 3.13 -27.88 -0.09 1.08 16 9 H 0.09 1.42 7.79 -51.93 -0.40 1.01 16 10 C -0.17 -2.23 9.48 37.16 0.35 -1.87 16 11 O -0.36 -5.87 9.53 -55.09 -0.52 -6.39 16 12 C 0.07 0.85 5.73 37.15 0.21 1.06 16 13 C -0.08 -0.88 5.71 -27.89 -0.16 -1.04 16 14 C -0.08 -0.84 5.13 -104.63 -0.54 -1.37 16 15 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 16 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 17 C -0.13 -1.09 10.05 -39.59 -0.40 -1.49 16 18 C -0.12 -1.10 10.05 -39.59 -0.40 -1.50 16 19 C -0.11 -1.17 9.70 -39.58 -0.38 -1.55 16 20 N -0.59 -13.48 2.29 -173.49 -0.40 -13.87 16 21 C 0.16 3.84 8.11 59.85 0.49 4.33 16 22 C -0.26 -6.43 9.32 -15.06 -0.14 -6.57 16 23 H 0.07 1.64 7.82 -52.49 -0.41 1.23 16 24 C 0.01 0.14 5.12 -17.43 -0.09 0.05 16 25 N -0.90 -24.23 10.65 55.49 0.59 -23.64 16 26 Si 0.90 20.46 29.57 -169.99 -5.03 15.43 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 30 H 0.05 0.87 6.66 -51.93 -0.35 0.53 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.16 7.84 -51.92 -0.41 0.76 16 35 H 0.41 8.16 7.68 -40.82 -0.31 7.84 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 38 H 0.06 0.74 7.87 -51.93 -0.41 0.33 16 39 H 0.05 0.58 7.87 -51.93 -0.41 0.17 16 40 H 0.05 0.69 8.09 -51.92 -0.42 0.27 16 41 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 42 H 0.08 0.86 8.08 -51.92 -0.42 0.44 16 43 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 44 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 45 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 48 H 0.03 0.73 7.41 -51.93 -0.38 0.35 16 49 H 0.04 1.08 7.23 -51.93 -0.38 0.71 16 50 H 0.00 -0.03 6.43 -51.93 -0.33 -0.37 16 51 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 416.50 15.07 6.28 6.28 Total: -1.00 -30.04 416.50 -10.33 -40.36 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -8.81 Total: 7.45 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -1.88 Total: 0.63 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.13 Total: -51.16 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.76 Total: -19.00 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -30.04 -10.33 -40.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734059503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.570 kcal (2) G-P(sol) polarization free energy of solvation -30.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds