Wall clock time and date at job start Tue Mar 31 2020 17:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47278 * 2 1 4 4 C 1.53003 * 109.47220 * 240.00579 * 2 1 3 5 5 N 1.46497 * 109.47414 * 185.00238 * 4 2 1 6 6 C 1.34778 * 120.00109 * 179.97438 * 5 4 2 7 7 O 1.21277 * 119.99656 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99992 * 179.97438 * 6 5 4 9 9 H 1.09007 * 109.47161 * 54.99412 * 8 6 5 10 10 C 1.53000 * 109.47062 * 294.99873 * 8 6 5 11 11 O 1.42900 * 109.47163 * 174.99602 * 8 6 5 12 12 C 1.42897 * 114.00276 * 209.99731 * 11 8 6 13 13 C 1.52991 * 109.47386 * 180.02562 * 12 11 8 14 14 C 1.50699 * 109.47501 * 180.02562 * 13 12 11 15 15 C 1.38230 * 120.00074 * 269.73178 * 14 13 12 16 16 C 1.38239 * 119.99902 * 179.76798 * 15 14 13 17 17 C 1.38233 * 119.99690 * 0.47691 * 16 15 14 18 18 C 1.38232 * 120.00552 * 359.79427 * 17 16 15 19 19 C 1.38234 * 119.99565 * 359.95910 * 18 17 16 20 20 N 1.46498 * 109.47649 * 120.00012 * 2 1 3 21 21 C 1.46503 * 119.99365 * 59.99693 * 20 2 1 22 22 C 1.36931 * 120.00180 * 240.00143 * 20 2 1 23 23 H 1.07995 * 120.00477 * 23.11944 * 22 20 2 24 24 C 1.38812 * 119.99894 * 203.11351 * 22 20 2 25 25 N 1.31619 * 120.00015 * 11.69164 * 24 22 20 26 26 Si 1.86801 * 120.00332 * 191.68616 * 24 22 20 27 27 H 1.48495 * 109.46923 * 90.00195 * 26 24 22 28 28 H 1.48493 * 109.47293 * 210.00479 * 26 24 22 29 29 H 1.48502 * 109.46678 * 330.00555 * 26 24 22 30 30 H 1.09000 * 109.46805 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46622 * 299.99857 * 1 2 3 32 32 H 1.09000 * 109.47298 * 59.99726 * 1 2 3 33 33 H 1.08993 * 109.47251 * 64.99117 * 4 2 1 34 34 H 1.09009 * 109.46324 * 304.99764 * 4 2 1 35 35 H 0.97002 * 119.99879 * 359.97438 * 5 4 2 36 36 H 1.08998 * 109.47341 * 299.99866 * 10 8 6 37 37 H 1.08999 * 109.47332 * 60.00393 * 10 8 6 38 38 H 1.09004 * 109.46882 * 179.97438 * 10 8 6 39 39 H 1.09002 * 109.47042 * 300.00723 * 12 11 8 40 40 H 1.09008 * 109.46872 * 60.00008 * 12 11 8 41 41 H 1.09005 * 109.47084 * 300.00480 * 13 12 11 42 42 H 1.09008 * 109.47181 * 60.00108 * 13 12 11 43 43 H 1.08005 * 120.00292 * 359.97438 * 15 14 13 44 44 H 1.08003 * 120.00084 * 180.25499 * 16 15 14 45 45 H 1.08010 * 119.99547 * 179.77517 * 17 16 15 46 46 H 1.07999 * 120.00321 * 179.97438 * 18 17 16 47 47 H 1.08002 * 120.00169 * 180.02562 * 19 18 17 48 48 H 1.08998 * 109.46833 * 93.94397 * 21 20 2 49 49 H 1.09002 * 109.46929 * 213.93890 * 21 20 2 50 50 H 1.08991 * 109.47477 * 333.94099 * 21 20 2 51 51 H 0.97001 * 120.00211 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4291 -2.1909 7 8 3.5698 -1.8847 -3.1392 8 6 5.6749 -1.5368 -2.1308 9 1 5.9675 -2.0209 -1.1990 10 6 6.2895 -0.1370 -2.1930 11 8 6.1416 -2.3115 -3.2372 12 6 7.3427 -3.0388 -2.9720 13 6 7.7475 -3.8271 -4.2192 14 6 9.0139 -4.5946 -3.9394 15 6 10.2432 -4.0165 -4.1949 16 6 11.4049 -4.7187 -3.9338 17 6 11.3370 -6.0028 -3.4263 18 6 10.1076 -6.5830 -3.1760 19 6 8.9460 -5.8788 -3.4324 20 7 2.0185 -0.6906 1.1961 21 6 1.6645 -2.0932 1.4279 22 6 2.8057 -0.0251 2.0974 23 1 2.7708 1.0529 2.1525 24 6 3.6487 -0.7361 2.9405 25 7 3.8674 -2.0162 2.7259 26 14 4.4730 0.1237 4.3795 27 1 3.6016 0.0285 5.5781 28 1 5.7777 -0.5262 4.6631 29 1 4.6949 1.5526 4.0410 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.7516 -0.1582 -2.1370 34 1 1.6054 -1.7198 -1.2952 35 1 3.9825 -0.4622 -0.4320 36 1 5.9970 0.3472 -3.1247 37 1 5.9336 0.4539 -1.3491 38 1 7.3759 -0.2149 -2.1491 39 1 8.1386 -2.3422 -2.7086 40 1 7.1748 -3.7283 -2.1445 41 1 6.9516 -4.5236 -4.4830 42 1 7.9155 -3.1373 -5.0464 43 1 10.2962 -3.0148 -4.5955 44 1 12.3655 -4.2655 -4.1295 45 1 12.2446 -6.5528 -3.2257 46 1 10.0546 -7.5864 -2.7800 47 1 7.9854 -6.3320 -3.2365 48 1 2.4508 -2.7363 1.0328 49 1 1.5554 -2.2683 2.4982 50 1 0.7241 -2.3184 0.9252 51 1 4.4567 -2.5129 3.3148 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734059503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:15 Heat of formation + Delta-G solvation = -60.842271 kcal Electronic energy + Delta-G solvation = -28836.728639 eV Core-core repulsion = 24928.895591 eV Total energy + Delta-G solvation = -3907.833047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.00078 -40.22989 -38.94695 -38.15662 -35.37813 -34.65893 -33.84113 -32.22976 -31.78294 -30.98721 -29.35072 -27.98957 -27.34649 -25.30235 -24.80157 -24.06895 -23.47308 -21.91449 -21.24493 -20.86034 -18.82519 -18.29837 -18.12402 -17.52335 -17.14099 -16.88578 -16.57741 -16.31949 -15.91462 -15.76798 -15.58444 -15.36679 -14.67973 -14.59663 -14.35829 -14.30024 -14.12970 -13.87312 -13.68510 -13.59761 -13.55813 -13.30015 -13.15750 -12.93602 -12.82338 -12.60620 -12.47029 -12.39842 -12.25661 -12.14148 -12.05774 -11.95856 -11.82675 -11.72482 -11.46463 -11.01028 -10.59578 -10.47144 -9.92809 -9.83109 -9.65813 -8.74864 -7.75088 -5.24590 0.39357 0.48931 1.50541 1.54453 1.60369 1.62532 1.95677 2.54542 2.78234 3.01307 3.38602 3.65317 3.73495 3.84979 3.92622 3.94746 4.02391 4.09256 4.16324 4.17992 4.27658 4.30254 4.39673 4.41265 4.59297 4.62876 4.63404 4.65501 4.71920 4.75450 4.84865 4.86420 4.90126 4.95259 5.10306 5.13551 5.16183 5.17486 5.28917 5.32081 5.48007 5.56277 5.61859 5.62000 5.70076 5.72492 5.76559 6.04568 6.11199 6.38136 6.67462 7.20536 7.28736 7.91613 8.38119 9.26296 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.011670 B = 0.002618 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.708632 B =10693.735979 C =12019.434283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 H 0.077 0.923 4 C 0.114 3.886 5 N -0.696 5.696 6 C 0.508 3.492 7 O -0.582 6.582 8 C 0.075 3.925 9 H 0.087 0.913 10 C -0.159 4.159 11 O -0.379 6.379 12 C 0.064 3.936 13 C -0.071 4.071 14 C -0.093 4.093 15 C -0.123 4.123 16 C -0.125 4.125 17 C -0.129 4.129 18 C -0.128 4.128 19 C -0.132 4.132 20 N -0.602 5.602 21 C 0.181 3.819 22 C -0.257 4.257 23 H 0.075 0.925 24 C -0.042 4.042 25 N -0.930 5.930 26 Si 0.959 3.041 27 H -0.297 1.297 28 H -0.300 1.300 29 H -0.266 1.266 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.412 0.588 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.067 0.933 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.137 0.863 47 H 0.122 0.878 48 H -0.001 1.001 49 H 0.015 0.985 50 H 0.021 0.979 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.981 -1.449 -11.728 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.050 3.950 3 H 0.095 0.905 4 C -0.012 4.012 5 N -0.347 5.347 6 C 0.294 3.706 7 O -0.462 6.462 8 C 0.014 3.986 9 H 0.104 0.896 10 C -0.216 4.216 11 O -0.298 6.298 12 C -0.012 4.012 13 C -0.108 4.108 14 C -0.093 4.093 15 C -0.141 4.141 16 C -0.143 4.143 17 C -0.147 4.147 18 C -0.146 4.146 19 C -0.150 4.150 20 N -0.325 5.325 21 C 0.036 3.964 22 C -0.387 4.387 23 H 0.092 0.908 24 C -0.238 4.238 25 N -0.576 5.576 26 Si 0.789 3.211 27 H -0.225 1.225 28 H -0.227 1.227 29 H -0.191 1.191 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.249 0.751 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.161 0.839 46 H 0.155 0.845 47 H 0.140 0.860 48 H 0.017 0.983 49 H 0.034 0.966 50 H 0.039 0.961 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.540 -1.867 -12.471 17.094 hybrid contribution 0.545 -0.053 1.697 1.783 sum 12.085 -1.921 -10.774 16.304 Atomic orbital electron populations 1.22066 0.95140 1.01596 1.02084 1.20842 0.94206 0.95652 0.84264 0.90485 1.21893 0.79683 1.00125 0.99503 1.45808 1.08303 1.57973 1.22627 1.20800 0.90216 0.77439 0.82161 1.90616 1.71021 1.49398 1.35194 1.21872 0.90391 0.95236 0.91105 0.89564 1.22157 1.02513 0.93347 1.03604 1.87949 1.42886 1.63105 1.35893 1.22673 0.86211 0.94404 0.97896 1.20380 0.94727 0.98464 0.97263 1.19773 0.94590 0.94855 1.00106 1.21330 0.91816 1.00700 1.00272 1.21484 0.98988 0.94996 0.98796 1.21514 0.98362 0.95846 0.98976 1.21436 0.92501 1.00782 0.99896 1.21310 0.99354 0.94712 0.99635 1.44073 1.57730 1.09273 1.21435 1.20413 0.93958 0.84888 0.97115 1.19505 1.15173 0.91515 1.12474 0.90758 1.25619 0.99030 0.96644 1.02471 1.70239 1.39915 1.08565 1.38901 0.85396 0.77081 0.78481 0.80177 1.22457 1.22693 1.19074 0.93469 0.92624 0.90485 0.91185 0.94294 0.75147 0.91417 0.90179 0.89356 0.91444 0.93838 0.90969 0.89374 0.84621 0.83792 0.83931 0.84482 0.86003 0.98267 0.96629 0.96067 0.94604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.55 9.18 71.98 0.66 -3.89 16 2 C 0.16 5.68 2.87 44.99 0.13 5.81 16 3 H 0.08 2.67 7.87 -2.39 -0.02 2.65 16 4 C 0.11 4.16 4.97 86.38 0.43 4.59 16 5 N -0.70 -26.45 5.35 -463.06 -2.48 -28.93 16 6 C 0.51 19.90 7.18 87.66 0.63 20.53 16 7 O -0.58 -26.83 16.51 15.97 0.26 -26.56 16 8 C 0.08 2.43 3.13 29.85 0.09 2.52 16 9 H 0.09 2.80 7.79 -2.38 -0.02 2.78 16 10 C -0.16 -3.99 9.48 71.98 0.68 -3.31 16 11 O -0.38 -12.46 9.53 -129.99 -1.24 -13.70 16 12 C 0.06 1.66 5.73 71.98 0.41 2.07 16 13 C -0.07 -1.60 5.71 29.84 0.17 -1.43 16 14 C -0.09 -1.94 5.13 -19.87 -0.10 -2.04 16 15 C -0.12 -2.20 9.70 22.27 0.22 -1.98 16 16 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 17 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 18 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 19 C -0.13 -2.73 9.70 22.27 0.22 -2.51 16 20 N -0.60 -26.95 2.29 -702.79 -1.61 -28.56 16 21 C 0.18 8.63 8.11 127.77 1.04 9.67 16 22 C -0.26 -12.48 9.32 84.03 0.78 -11.70 16 23 H 0.07 3.49 7.82 -2.91 -0.02 3.46 16 24 C -0.04 -2.13 5.12 84.86 0.43 -1.69 16 25 N -0.93 -50.82 10.65 21.65 0.23 -50.59 16 26 Si 0.96 41.89 29.57 68.60 2.03 43.92 16 27 H -0.30 -13.29 7.11 99.48 0.71 -12.58 16 28 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 29 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 30 H 0.05 1.48 6.66 -2.39 -0.02 1.46 16 31 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.04 1.57 7.84 -2.38 -0.02 1.55 16 35 H 0.41 16.11 7.68 -92.71 -0.71 15.40 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.95 7.93 -2.39 -0.02 1.93 16 38 H 0.09 1.81 7.87 -2.39 -0.02 1.79 16 39 H 0.07 1.48 7.87 -2.39 -0.02 1.46 16 40 H 0.04 1.18 8.09 -2.38 -0.02 1.16 16 41 H 0.07 1.74 8.09 -2.38 -0.02 1.72 16 42 H 0.09 1.82 8.08 -2.38 -0.02 1.81 16 43 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 45 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 46 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 47 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 48 H 0.00 -0.05 7.41 -2.39 -0.02 -0.07 16 49 H 0.01 0.79 7.23 -2.39 -0.02 0.77 16 50 H 0.02 0.89 6.43 -2.39 -0.02 0.87 16 51 H 0.24 13.29 8.31 -92.71 -0.77 12.52 16 Total: -1.00 -64.66 416.50 3.85 -60.82 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.18 Total: 32.50 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 6.46 Total: 11.10 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -3.85 Total: -108.08 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -0.97 Total: -40.26 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -64.66 3.85 -60.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734059503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.027 kcal (2) G-P(sol) polarization free energy of solvation -64.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds