Wall clock time and date at job start Tue Mar 31 2020 17:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47090 * 2 1 4 4 O 1.42894 * 109.46993 * 240.00315 * 2 1 3 5 5 C 1.42902 * 114.00263 * 90.00061 * 4 2 1 6 6 C 1.52996 * 109.47330 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47220 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00069 * 269.72751 * 7 6 5 9 9 C 1.38230 * 120.00030 * 179.76621 * 8 7 6 10 10 C 1.38237 * 119.99608 * 0.48201 * 9 8 7 11 11 C 1.38229 * 120.00251 * 359.79553 * 10 9 8 12 12 C 1.38228 * 120.00102 * 359.95299 * 11 10 9 13 13 C 1.50697 * 109.47083 * 120.00082 * 2 1 3 14 14 O 1.21277 * 119.99726 * 119.99857 * 13 2 1 15 15 N 1.34779 * 120.00092 * 299.99959 * 13 2 1 16 16 C 1.46502 * 119.99618 * 179.97438 * 15 13 2 17 17 C 1.53002 * 109.46490 * 179.97438 * 16 15 13 18 18 H 1.08999 * 109.47438 * 295.00000 * 17 16 15 19 19 C 1.53009 * 109.46732 * 175.00029 * 17 16 15 20 20 N 1.46497 * 109.47073 * 55.00365 * 17 16 15 21 21 C 1.46495 * 120.00184 * 59.99875 * 20 17 16 22 22 C 1.36944 * 120.00057 * 239.99394 * 20 17 16 23 23 H 1.08000 * 119.99079 * 23.09721 * 22 20 17 24 24 C 1.38805 * 120.00266 * 203.10290 * 22 20 17 25 25 N 1.31622 * 120.00196 * 12.98862 * 24 22 20 26 26 Si 1.86797 * 120.00074 * 192.99269 * 24 22 20 27 27 H 1.48503 * 109.46857 * 89.99808 * 26 24 22 28 28 H 1.48500 * 109.47327 * 209.99581 * 26 24 22 29 29 H 1.48497 * 109.47028 * 330.00072 * 26 24 22 30 30 H 1.09001 * 109.46879 * 300.00091 * 1 2 3 31 31 H 1.09001 * 109.46535 * 59.99572 * 1 2 3 32 32 H 1.08992 * 109.47014 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46991 * 59.99832 * 5 4 2 34 34 H 1.09000 * 109.46961 * 299.99883 * 5 4 2 35 35 H 1.09000 * 109.47152 * 60.00014 * 6 5 4 36 36 H 1.09000 * 109.47071 * 299.99899 * 6 5 4 37 37 H 1.08001 * 120.00061 * 359.97438 * 8 7 6 38 38 H 1.07994 * 120.00202 * 180.25133 * 9 8 7 39 39 H 1.08002 * 119.99481 * 179.76616 * 10 9 8 40 40 H 1.07998 * 120.00147 * 179.97438 * 11 10 9 41 41 H 1.07998 * 120.00409 * 180.02562 * 12 11 10 42 42 H 0.96996 * 120.00000 * 359.97438 * 15 13 2 43 43 H 1.08998 * 109.47572 * 299.99992 * 16 15 13 44 44 H 1.08991 * 109.47138 * 60.00447 * 16 15 13 45 45 H 1.08999 * 109.47135 * 300.00156 * 19 17 16 46 46 H 1.09002 * 109.46822 * 59.99997 * 19 17 16 47 47 H 1.09001 * 109.46873 * 179.97438 * 19 17 16 48 48 H 1.09007 * 109.47481 * 95.12439 * 21 20 17 49 49 H 1.09005 * 109.47331 * 215.12479 * 21 20 17 50 50 H 1.08998 * 109.47324 * 335.12736 * 21 20 17 51 51 H 0.96999 * 119.99887 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.2001 0.1830 -2.2941 6 6 2.7091 -0.6404 -3.4788 7 6 2.9128 0.2629 -4.6679 8 6 1.8795 0.4724 -5.5618 9 6 2.0648 1.3047 -6.6498 10 6 3.2867 1.9197 -6.8492 11 6 4.3218 1.7057 -5.9584 12 6 4.1348 0.8775 -4.8676 13 6 2.0324 -0.7104 1.2304 14 8 2.7296 -1.6965 1.1191 15 7 1.7068 -0.2500 2.4546 16 6 2.1947 -0.9410 3.6507 17 6 1.6853 -0.2193 4.8999 18 1 2.1207 0.7789 4.9458 19 6 2.0896 -1.0098 6.1460 20 7 0.2254 -0.1131 4.8413 21 6 -0.5951 -1.3249 4.7734 22 6 -0.3725 1.1189 4.8502 23 1 0.1805 1.9896 4.5301 24 6 -1.6890 1.2486 5.2705 25 7 -2.2811 0.2534 5.8962 26 14 -2.6204 2.8354 4.9483 27 1 -3.3091 2.7471 3.6356 28 1 -3.6251 3.0463 6.0212 29 1 -1.6673 3.9741 4.9317 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.9320 0.9514 -2.0450 34 1 1.2538 0.6548 -2.5588 35 1 1.9775 -1.4090 -3.7281 36 1 3.6555 -1.1118 -3.2138 37 1 0.9262 -0.0116 -5.4084 38 1 1.2563 1.4716 -7.3460 39 1 3.4327 2.5670 -7.7013 40 1 5.2765 2.1858 -6.1145 41 1 4.9434 0.7105 -4.1714 42 1 1.1495 0.5389 2.5436 43 1 1.8310 -1.9685 3.6505 44 1 3.2846 -0.9414 3.6508 45 1 1.6542 -2.0080 6.1001 46 1 3.1759 -1.0889 6.1895 47 1 1.7271 -0.4955 7.0360 48 1 -0.9176 -1.6021 5.7771 49 1 -1.4692 -1.1374 4.1497 50 1 -0.0090 -2.1368 4.3429 51 1 -3.2010 0.3442 6.1902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734059504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:19 Heat of formation + Delta-G solvation = -45.600782 kcal Electronic energy + Delta-G solvation = -28554.672966 eV Core-core repulsion = 24647.500839 eV Total energy + Delta-G solvation = -3907.172127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.80248 -39.47486 -37.75086 -36.57679 -33.88610 -33.76368 -32.23226 -31.19392 -31.01090 -29.31202 -28.56699 -26.04484 -25.97164 -24.20748 -23.31626 -22.88392 -22.85280 -21.21324 -19.88651 -19.30490 -17.28871 -16.99375 -16.91233 -16.72483 -16.02257 -15.46999 -15.39687 -15.24409 -14.90172 -14.44289 -14.37427 -13.96926 -13.70477 -13.48885 -13.29492 -13.00845 -12.82349 -12.73673 -12.70021 -12.33640 -12.22544 -11.99692 -11.93950 -11.55176 -11.44070 -11.34154 -11.21720 -11.11833 -11.04307 -10.86281 -10.77018 -10.43603 -10.30210 -9.92854 -9.86995 -9.80115 -9.23693 -9.19313 -9.01885 -8.63081 -8.50449 -6.82806 -5.78471 -3.26560 1.01966 1.09439 2.94908 3.12584 3.31435 3.37817 3.40196 3.49702 4.03723 4.41469 4.53256 4.61628 4.72961 4.83155 4.85252 4.87006 5.07511 5.08064 5.18328 5.21239 5.24680 5.25520 5.34042 5.39728 5.57672 5.59815 5.60711 5.75378 5.76892 5.79233 5.89211 5.91846 6.10644 6.15879 6.18606 6.20854 6.24409 6.31949 6.34751 6.43405 6.69878 6.75500 6.83890 6.87683 6.99667 7.11472 7.35520 7.68573 7.75743 8.03488 8.32814 8.65778 9.16685 9.79909 10.30017 11.25408 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.002251 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.637160 B =12435.730136 C =13657.400100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.074 3.926 3 H 0.083 0.917 4 O -0.358 6.358 5 C 0.067 3.933 6 C -0.079 4.079 7 C -0.080 4.080 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.125 4.125 11 C -0.119 4.119 12 C -0.115 4.115 13 C 0.510 3.490 14 O -0.538 6.538 15 N -0.703 5.703 16 C 0.108 3.892 17 C 0.157 3.843 18 H 0.068 0.932 19 C -0.156 4.156 20 N -0.593 5.593 21 C 0.164 3.836 22 C -0.262 4.262 23 H 0.068 0.932 24 C 0.006 3.994 25 N -0.902 5.902 26 Si 0.902 3.098 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.280 1.280 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.409 0.591 43 H 0.061 0.939 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.041 0.959 47 H 0.059 0.941 48 H 0.029 0.971 49 H 0.039 0.961 50 H -0.001 1.001 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.602 2.587 -20.292 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.012 3.988 3 H 0.101 0.899 4 O -0.276 6.276 5 C -0.010 4.010 6 C -0.117 4.117 7 C -0.080 4.080 8 C -0.133 4.133 9 C -0.138 4.138 10 C -0.143 4.143 11 C -0.137 4.137 12 C -0.133 4.133 13 C 0.294 3.706 14 O -0.415 6.415 15 N -0.356 5.356 16 C -0.018 4.018 17 C 0.049 3.951 18 H 0.086 0.914 19 C -0.216 4.216 20 N -0.316 5.316 21 C 0.020 3.980 22 C -0.391 4.391 23 H 0.086 0.914 24 C -0.193 4.193 25 N -0.546 5.546 26 Si 0.732 3.268 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.205 1.205 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.246 0.754 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.078 0.922 48 H 0.048 0.952 49 H 0.057 0.943 50 H 0.018 0.982 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.945 1.663 -20.288 22.656 hybrid contribution -1.045 1.511 -0.006 1.837 sum 8.900 3.174 -20.294 22.386 Atomic orbital electron populations 1.22247 0.93281 1.03953 1.03415 1.21891 0.95275 0.96063 0.85533 0.89916 1.88005 1.86634 1.34090 1.18861 1.22511 0.99550 0.92831 0.86136 1.20465 1.03390 0.96983 0.90833 1.19777 0.93995 0.97994 0.96206 1.21126 0.98741 0.98729 0.94660 1.21165 0.97456 0.97297 0.97839 1.21172 0.93534 1.00084 0.99515 1.21162 0.99094 0.98590 0.94900 1.21133 0.97045 0.97168 0.97917 1.20250 0.80830 0.85047 0.84469 1.90668 1.38027 1.26070 1.86777 1.45825 1.52782 1.32341 1.04653 1.21950 0.97456 0.97068 0.85284 1.20625 0.86420 0.97297 0.90779 0.91376 1.22186 0.98947 1.00841 0.99622 1.43976 0.98639 1.03462 1.85536 1.20722 0.92508 0.85493 0.99286 1.19179 0.95730 0.85983 1.38224 0.91397 1.25036 0.98717 0.97276 0.98317 1.70072 1.12664 1.31391 1.40445 0.86307 0.79850 0.83170 0.77476 1.21500 1.21815 1.20511 0.89949 0.91717 0.91143 0.93184 0.93044 0.89916 0.89839 0.85873 0.86038 0.86183 0.86042 0.85867 0.75415 0.92081 0.92513 0.93151 0.93991 0.92205 0.95220 0.94255 0.98233 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.42 37.16 0.35 -1.89 16 2 C 0.07 1.04 3.14 -27.88 -0.09 0.95 16 3 H 0.08 0.97 7.79 -51.93 -0.40 0.57 16 4 O -0.36 -5.25 9.52 -55.14 -0.52 -5.77 16 5 C 0.07 0.73 5.73 37.16 0.21 0.94 16 6 C -0.08 -0.78 5.72 -27.88 -0.16 -0.94 16 7 C -0.08 -0.73 5.13 -104.62 -0.54 -1.27 16 8 C -0.11 -0.98 9.70 -39.59 -0.38 -1.36 16 9 C -0.12 -0.93 10.05 -39.58 -0.40 -1.32 16 10 C -0.13 -0.94 10.05 -39.59 -0.40 -1.33 16 11 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 12 C -0.11 -0.99 9.70 -39.59 -0.38 -1.37 16 13 C 0.51 8.93 7.23 -10.99 -0.08 8.85 16 14 O -0.54 -11.40 16.50 -14.35 -0.24 -11.64 16 15 N -0.70 -12.02 5.28 -60.30 -0.32 -12.34 16 16 C 0.11 1.91 4.93 -4.04 -0.02 1.89 16 17 C 0.16 2.97 2.87 -67.93 -0.19 2.78 16 18 H 0.07 1.27 7.86 -51.93 -0.41 0.86 16 19 C -0.16 -2.74 9.19 37.16 0.34 -2.40 16 20 N -0.59 -13.46 2.28 -173.48 -0.40 -13.86 16 21 C 0.16 3.87 8.00 59.84 0.48 4.35 16 22 C -0.26 -6.50 9.31 -15.06 -0.14 -6.64 16 23 H 0.07 1.62 7.82 -52.49 -0.41 1.21 16 24 C 0.01 0.15 5.10 -17.43 -0.09 0.06 16 25 N -0.90 -25.13 10.72 55.49 0.59 -24.53 16 26 Si 0.90 20.58 29.57 -169.99 -5.03 15.55 16 27 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.08 1.12 7.57 -51.93 -0.39 0.73 16 31 H 0.06 0.71 7.87 -51.93 -0.41 0.30 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 34 H 0.05 0.51 7.87 -51.93 -0.41 0.10 16 35 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.41 6.89 7.31 -40.82 -0.30 6.59 16 43 H 0.06 1.17 6.87 -51.93 -0.36 0.81 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.90 7.67 -51.93 -0.40 0.50 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.03 0.77 7.34 -51.92 -0.38 0.39 16 49 H 0.04 1.00 7.35 -51.93 -0.38 0.62 16 50 H 0.00 -0.02 6.54 -51.93 -0.34 -0.36 16 51 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 415.79 15.07 6.27 6.27 Total: -1.00 -30.90 415.79 -10.32 -41.22 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -8.79 Total: 5.12 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -1.88 Total: -0.02 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.12 Total: -50.73 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.76 Total: -17.41 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.90 -10.32 -41.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734059504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.383 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds