Wall clock time and date at job start Tue Mar 31 2020 17:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47090 * 2 1 4 4 O 1.42894 * 109.46993 * 240.00315 * 2 1 3 5 5 C 1.42902 * 114.00263 * 90.00061 * 4 2 1 6 6 C 1.52996 * 109.47330 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47220 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00069 * 269.72751 * 7 6 5 9 9 C 1.38230 * 120.00030 * 179.76621 * 8 7 6 10 10 C 1.38237 * 119.99608 * 0.48201 * 9 8 7 11 11 C 1.38229 * 120.00251 * 359.79553 * 10 9 8 12 12 C 1.38228 * 120.00102 * 359.95299 * 11 10 9 13 13 C 1.50697 * 109.47083 * 120.00082 * 2 1 3 14 14 O 1.21277 * 119.99726 * 119.99857 * 13 2 1 15 15 N 1.34779 * 120.00092 * 299.99959 * 13 2 1 16 16 C 1.46502 * 119.99618 * 179.97438 * 15 13 2 17 17 C 1.53002 * 109.46490 * 179.97438 * 16 15 13 18 18 H 1.08999 * 109.47438 * 295.00000 * 17 16 15 19 19 C 1.53009 * 109.46732 * 175.00029 * 17 16 15 20 20 N 1.46497 * 109.47073 * 55.00365 * 17 16 15 21 21 C 1.46495 * 120.00184 * 59.99875 * 20 17 16 22 22 C 1.36944 * 120.00057 * 239.99394 * 20 17 16 23 23 H 1.08000 * 119.99079 * 23.09721 * 22 20 17 24 24 C 1.38805 * 120.00266 * 203.10290 * 22 20 17 25 25 N 1.31622 * 120.00196 * 12.98862 * 24 22 20 26 26 Si 1.86797 * 120.00074 * 192.99269 * 24 22 20 27 27 H 1.48503 * 109.46857 * 89.99808 * 26 24 22 28 28 H 1.48500 * 109.47327 * 209.99581 * 26 24 22 29 29 H 1.48497 * 109.47028 * 330.00072 * 26 24 22 30 30 H 1.09001 * 109.46879 * 300.00091 * 1 2 3 31 31 H 1.09001 * 109.46535 * 59.99572 * 1 2 3 32 32 H 1.08992 * 109.47014 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46991 * 59.99832 * 5 4 2 34 34 H 1.09000 * 109.46961 * 299.99883 * 5 4 2 35 35 H 1.09000 * 109.47152 * 60.00014 * 6 5 4 36 36 H 1.09000 * 109.47071 * 299.99899 * 6 5 4 37 37 H 1.08001 * 120.00061 * 359.97438 * 8 7 6 38 38 H 1.07994 * 120.00202 * 180.25133 * 9 8 7 39 39 H 1.08002 * 119.99481 * 179.76616 * 10 9 8 40 40 H 1.07998 * 120.00147 * 179.97438 * 11 10 9 41 41 H 1.07998 * 120.00409 * 180.02562 * 12 11 10 42 42 H 0.96996 * 120.00000 * 359.97438 * 15 13 2 43 43 H 1.08998 * 109.47572 * 299.99992 * 16 15 13 44 44 H 1.08991 * 109.47138 * 60.00447 * 16 15 13 45 45 H 1.08999 * 109.47135 * 300.00156 * 19 17 16 46 46 H 1.09002 * 109.46822 * 59.99997 * 19 17 16 47 47 H 1.09001 * 109.46873 * 179.97438 * 19 17 16 48 48 H 1.09007 * 109.47481 * 95.12439 * 21 20 17 49 49 H 1.09005 * 109.47331 * 215.12479 * 21 20 17 50 50 H 1.08998 * 109.47324 * 335.12736 * 21 20 17 51 51 H 0.96999 * 119.99887 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.2001 0.1830 -2.2941 6 6 2.7091 -0.6404 -3.4788 7 6 2.9128 0.2629 -4.6679 8 6 1.8795 0.4724 -5.5618 9 6 2.0648 1.3047 -6.6498 10 6 3.2867 1.9197 -6.8492 11 6 4.3218 1.7057 -5.9584 12 6 4.1348 0.8775 -4.8676 13 6 2.0324 -0.7104 1.2304 14 8 2.7296 -1.6965 1.1191 15 7 1.7068 -0.2500 2.4546 16 6 2.1947 -0.9410 3.6507 17 6 1.6853 -0.2193 4.8999 18 1 2.1207 0.7789 4.9458 19 6 2.0896 -1.0098 6.1460 20 7 0.2254 -0.1131 4.8413 21 6 -0.5951 -1.3249 4.7734 22 6 -0.3725 1.1189 4.8502 23 1 0.1805 1.9896 4.5301 24 6 -1.6890 1.2486 5.2705 25 7 -2.2811 0.2534 5.8962 26 14 -2.6204 2.8354 4.9483 27 1 -3.3091 2.7471 3.6356 28 1 -3.6251 3.0463 6.0212 29 1 -1.6673 3.9741 4.9317 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 2.9320 0.9514 -2.0450 34 1 1.2538 0.6548 -2.5588 35 1 1.9775 -1.4090 -3.7281 36 1 3.6555 -1.1118 -3.2138 37 1 0.9262 -0.0116 -5.4084 38 1 1.2563 1.4716 -7.3460 39 1 3.4327 2.5670 -7.7013 40 1 5.2765 2.1858 -6.1145 41 1 4.9434 0.7105 -4.1714 42 1 1.1495 0.5389 2.5436 43 1 1.8310 -1.9685 3.6505 44 1 3.2846 -0.9414 3.6508 45 1 1.6542 -2.0080 6.1001 46 1 3.1759 -1.0889 6.1895 47 1 1.7271 -0.4955 7.0360 48 1 -0.9176 -1.6021 5.7771 49 1 -1.4692 -1.1374 4.1497 50 1 -0.0090 -2.1368 4.3429 51 1 -3.2010 0.3442 6.1902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734059504.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:18 Heat of formation + Delta-G solvation = -61.367642 kcal Electronic energy + Delta-G solvation = -28555.356668 eV Core-core repulsion = 24647.500839 eV Total energy + Delta-G solvation = -3907.855829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.01898 -40.21643 -38.94313 -38.15537 -35.42879 -34.64385 -33.81566 -32.20508 -31.76685 -31.02857 -29.32549 -27.99419 -27.34568 -25.30395 -24.81409 -24.07672 -23.45479 -21.89418 -21.26397 -20.86911 -18.84773 -18.27754 -18.11537 -17.50350 -17.12120 -16.98713 -16.58778 -16.15263 -15.91408 -15.74776 -15.63050 -15.39639 -14.68461 -14.60918 -14.40096 -14.28314 -14.02838 -13.91829 -13.79046 -13.57750 -13.43550 -13.28114 -13.04405 -12.92045 -12.83466 -12.65844 -12.52396 -12.37639 -12.26213 -12.10442 -12.07157 -11.94070 -11.80895 -11.76563 -11.49067 -10.97790 -10.59888 -10.46480 -9.96016 -9.81518 -9.63973 -8.75148 -7.75965 -5.24971 0.41138 0.50588 1.51970 1.53330 1.60293 1.60969 1.96350 2.54977 2.79053 3.01750 3.38922 3.63943 3.74120 3.87457 3.93488 3.95130 4.02299 4.07227 4.18355 4.20612 4.28796 4.31984 4.38194 4.43758 4.60817 4.61709 4.65077 4.66342 4.72530 4.76386 4.78421 4.92771 4.94580 4.97982 5.05447 5.17845 5.18740 5.19620 5.24734 5.37097 5.43467 5.57808 5.58858 5.63825 5.71817 5.71872 5.76609 6.08797 6.12724 6.37875 6.65982 7.19644 7.28392 7.91246 8.37890 9.27305 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014598 B = 0.002251 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.637160 B =12435.730136 C =13657.400100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.079 3.921 3 H 0.112 0.888 4 O -0.383 6.383 5 C 0.064 3.936 6 C -0.074 4.074 7 C -0.092 4.092 8 C -0.126 4.126 9 C -0.126 4.126 10 C -0.130 4.130 11 C -0.127 4.127 12 C -0.128 4.128 13 C 0.507 3.493 14 O -0.579 6.579 15 N -0.700 5.700 16 C 0.117 3.883 17 C 0.157 3.843 18 H 0.077 0.923 19 C -0.149 4.149 20 N -0.601 5.601 21 C 0.185 3.815 22 C -0.254 4.254 23 H 0.083 0.917 24 C -0.052 4.052 25 N -0.939 5.939 26 Si 0.963 3.037 27 H -0.286 1.286 28 H -0.307 1.307 29 H -0.264 1.264 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.128 0.872 42 H 0.412 0.588 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.076 0.924 47 H 0.042 0.958 48 H 0.001 0.999 49 H 0.013 0.987 50 H 0.017 0.983 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.688 4.501 -22.054 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.018 3.982 3 H 0.129 0.871 4 O -0.302 6.302 5 C -0.012 4.012 6 C -0.111 4.111 7 C -0.092 4.092 8 C -0.144 4.144 9 C -0.144 4.144 10 C -0.148 4.148 11 C -0.144 4.144 12 C -0.146 4.146 13 C 0.293 3.707 14 O -0.459 6.459 15 N -0.352 5.352 16 C -0.009 4.009 17 C 0.050 3.950 18 H 0.096 0.904 19 C -0.209 4.209 20 N -0.324 5.324 21 C 0.040 3.960 22 C -0.384 4.384 23 H 0.100 0.900 24 C -0.247 4.247 25 N -0.586 5.586 26 Si 0.793 3.207 27 H -0.213 1.213 28 H -0.234 1.234 29 H -0.189 1.189 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.146 0.854 42 H 0.249 0.751 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.094 0.906 47 H 0.061 0.939 48 H 0.019 0.981 49 H 0.032 0.968 50 H 0.035 0.965 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.066 3.605 -22.065 24.946 hybrid contribution -1.281 0.901 0.488 1.641 sum 9.784 4.505 -21.577 24.116 Atomic orbital electron populations 1.22196 0.92522 1.03104 1.04405 1.21882 0.95625 0.96702 0.84027 0.87061 1.87983 1.86787 1.35677 1.19716 1.22690 1.00495 0.92749 0.85232 1.20391 1.02806 0.97017 0.90911 1.19764 0.94636 0.98506 0.96267 1.21314 0.98995 0.99142 0.94948 1.21456 0.98257 0.96867 0.97849 1.21505 0.93283 1.00001 0.99984 1.21442 1.00103 0.98331 0.94564 1.21308 0.97107 0.97583 0.98603 1.20899 0.79906 0.84533 0.85379 1.90645 1.39965 1.27951 1.87366 1.45822 1.52540 1.32196 1.04622 1.21787 0.98237 0.95932 0.84929 1.20783 0.84021 0.98306 0.91867 0.90434 1.22079 1.01113 0.99745 0.97929 1.44117 1.00248 1.02599 1.85457 1.20361 0.92045 0.86480 0.97134 1.19580 0.95697 0.86950 1.36127 0.89960 1.25759 0.99949 0.99990 0.99048 1.70248 1.12409 1.33391 1.42531 0.85319 0.78422 0.80425 0.76569 1.21334 1.23409 1.18894 0.90448 0.89168 0.92914 0.92443 0.91715 0.90167 0.90663 0.85123 0.84206 0.84096 0.84277 0.85420 0.75078 0.93725 0.90913 0.93927 0.90564 0.93916 0.98059 0.96789 0.96500 0.94660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 9.42 71.98 0.68 -3.38 16 2 C 0.08 2.09 3.14 29.85 0.09 2.19 16 3 H 0.11 2.31 7.79 -2.39 -0.02 2.30 16 4 O -0.38 -10.83 9.52 -129.94 -1.24 -12.07 16 5 C 0.06 1.31 5.73 71.98 0.41 1.73 16 6 C -0.07 -1.40 5.72 29.85 0.17 -1.23 16 7 C -0.09 -1.59 5.13 -19.86 -0.10 -1.69 16 8 C -0.13 -1.98 9.70 22.27 0.22 -1.76 16 9 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 10 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 11 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 12 C -0.13 -2.07 9.70 22.27 0.22 -1.85 16 13 C 0.51 17.28 7.23 87.66 0.63 17.91 16 14 O -0.58 -24.40 16.50 16.02 0.26 -24.14 16 15 N -0.70 -22.99 5.28 -463.07 -2.45 -25.44 16 16 C 0.12 3.97 4.93 86.38 0.43 4.39 16 17 C 0.16 5.69 2.87 45.00 0.13 5.82 16 18 H 0.08 2.69 7.86 -2.39 -0.02 2.67 16 19 C -0.15 -5.01 9.19 71.99 0.66 -4.35 16 20 N -0.60 -26.94 2.28 -702.77 -1.61 -28.55 16 21 C 0.18 8.85 8.00 127.77 1.02 9.87 16 22 C -0.25 -12.33 9.31 84.03 0.78 -11.54 16 23 H 0.08 3.72 7.82 -2.91 -0.02 3.70 16 24 C -0.05 -2.73 5.10 84.86 0.43 -2.29 16 25 N -0.94 -53.43 10.72 21.65 0.23 -53.20 16 26 Si 0.96 42.12 29.57 68.60 2.03 44.15 16 27 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 28 H -0.31 -14.07 7.11 99.48 0.71 -13.36 16 29 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 30 H 0.08 1.98 7.57 -2.39 -0.02 1.97 16 31 H 0.09 1.75 7.87 -2.39 -0.02 1.73 16 32 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 34 H 0.06 1.14 7.87 -2.39 -0.02 1.12 16 35 H 0.08 1.52 8.08 -2.39 -0.02 1.50 16 36 H 0.07 1.51 8.09 -2.39 -0.02 1.50 16 37 H 0.13 1.74 8.06 -2.91 -0.02 1.72 16 38 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 39 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 40 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 42 H 0.41 13.16 7.31 -92.71 -0.68 12.49 16 43 H 0.04 1.68 6.87 -2.39 -0.02 1.66 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.04 1.48 7.67 -2.39 -0.02 1.46 16 46 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.00 0.06 7.34 -2.38 -0.02 0.04 16 49 H 0.01 0.71 7.35 -2.38 -0.02 0.69 16 50 H 0.02 0.72 6.54 -2.39 -0.02 0.71 16 51 H 0.24 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -66.79 415.79 3.90 -62.89 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.22 Total: 26.98 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 6.45 Total: 9.37 kcal Atomic # 7 Polarization: -103.37 SS G_CDS: -3.82 Total: -107.19 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.97 Total: -36.21 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -66.79 3.90 -62.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734059504.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.526 kcal (2) G-P(sol) polarization free energy of solvation -66.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds