Wall clock time and date at job start Tue Mar 31 2020 17:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47230 * 2 1 4 4 O 1.42894 * 109.47236 * 119.99726 * 2 1 3 5 5 C 1.42900 * 114.00595 * 270.00315 * 4 2 1 6 6 C 1.52996 * 109.47531 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47120 * 180.02562 * 6 5 4 8 8 C 1.38241 * 119.99999 * 269.72669 * 7 6 5 9 9 C 1.38232 * 120.00217 * 179.77074 * 8 7 6 10 10 C 1.38234 * 119.99417 * 0.50185 * 9 8 7 11 11 C 1.38231 * 120.00579 * 359.75082 * 10 9 8 12 12 C 1.38231 * 120.00235 * 90.00543 * 7 6 5 13 13 C 1.50701 * 109.47442 * 240.00176 * 2 1 3 14 14 O 1.21280 * 120.00125 * 245.00291 * 13 2 1 15 15 N 1.34777 * 119.99885 * 65.27504 * 13 2 1 16 16 C 1.46503 * 119.99973 * 179.72938 * 15 13 2 17 17 C 1.52998 * 109.47100 * 179.97438 * 16 15 13 18 18 H 1.08999 * 109.47333 * 64.99824 * 17 16 15 19 19 C 1.53000 * 109.47309 * 184.99705 * 17 16 15 20 20 N 1.46495 * 109.47230 * 305.00091 * 17 16 15 21 21 C 1.46504 * 119.99630 * 299.99787 * 20 17 16 22 22 C 1.36932 * 120.00369 * 120.00277 * 20 17 16 23 23 H 1.07994 * 120.00397 * 23.06731 * 22 20 17 24 24 C 1.38815 * 120.00047 * 203.07231 * 22 20 17 25 25 N 1.31624 * 120.00033 * 11.69531 * 24 22 20 26 26 Si 1.86803 * 120.00143 * 191.69949 * 24 22 20 27 27 H 1.48501 * 109.46880 * 0.02562 * 26 24 22 28 28 H 1.48496 * 109.47078 * 119.99847 * 26 24 22 29 29 H 1.48499 * 109.47161 * 239.99641 * 26 24 22 30 30 H 1.08999 * 109.46797 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47478 * 299.99849 * 1 2 3 32 32 H 1.09001 * 109.47044 * 59.99804 * 1 2 3 33 33 H 1.08995 * 109.46778 * 300.00370 * 5 4 2 34 34 H 1.09008 * 109.46732 * 59.99460 * 5 4 2 35 35 H 1.09002 * 109.47130 * 300.00471 * 6 5 4 36 36 H 1.09001 * 109.46971 * 60.00415 * 6 5 4 37 37 H 1.08005 * 119.99755 * 359.97438 * 8 7 6 38 38 H 1.07994 * 120.00286 * 180.23718 * 9 8 7 39 39 H 1.07999 * 119.99703 * 179.72678 * 10 9 8 40 40 H 1.08000 * 120.00511 * 179.97438 * 11 10 9 41 41 H 1.08000 * 120.00261 * 359.97438 * 12 7 6 42 42 H 0.96999 * 120.00223 * 359.71931 * 15 13 2 43 43 H 1.09006 * 109.46750 * 299.99487 * 16 15 13 44 44 H 1.08997 * 109.47107 * 59.99725 * 16 15 13 45 45 H 1.08990 * 109.47441 * 180.02562 * 19 17 16 46 46 H 1.09008 * 109.46959 * 300.00292 * 19 17 16 47 47 H 1.08999 * 109.46825 * 59.99808 * 19 17 16 48 48 H 1.08999 * 109.47062 * 93.94264 * 21 20 17 49 49 H 1.09005 * 109.46935 * 213.94297 * 21 20 17 50 50 H 1.08998 * 109.47045 * 333.94466 * 21 20 17 51 51 H 0.97001 * 120.00010 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7079 -0.6407 3.4792 7 6 2.9115 0.2625 4.6682 8 6 4.1356 0.8719 4.8716 9 6 4.3210 1.7041 5.9597 10 6 3.2856 1.9188 6.8499 11 6 2.0632 1.3053 6.6494 12 6 1.8762 0.4771 5.5586 13 6 2.0324 -0.7104 -1.2305 14 8 2.6530 -1.7466 -1.1215 15 7 1.7968 -0.1912 -2.4517 16 6 2.2903 -0.8787 -3.6476 17 6 1.8898 -0.0859 -4.8934 18 1 2.3946 0.8802 -4.8871 19 6 2.2955 -0.8651 -6.1460 20 7 0.4396 0.1210 -4.8952 21 6 -0.4647 -1.0316 -4.9033 22 6 -0.0708 1.3916 -4.8895 23 1 0.5271 2.2154 -5.2503 24 6 -1.3568 1.6209 -4.4197 25 7 -1.9995 0.6727 -3.7715 26 14 -2.1753 3.2752 -4.7078 27 1 -1.2489 4.1621 -5.4564 28 1 -3.4191 3.0816 -5.4956 29 1 -2.5088 3.8967 -3.4010 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.9318 0.9513 2.0450 34 1 1.2537 0.6547 2.5588 35 1 1.9757 -1.4090 3.7281 36 1 3.6541 -1.1127 3.2147 37 1 4.9460 0.7003 4.1786 38 1 5.2761 2.1832 6.1165 39 1 3.4318 2.5655 7.7024 40 1 1.2543 1.4727 7.3452 41 1 0.9211 -0.0022 5.4020 42 1 1.3003 0.6376 -2.5389 43 1 3.3765 -0.9565 -3.5996 44 1 1.8563 -1.8772 -3.6977 45 1 2.0106 -0.3002 -7.0335 46 1 3.3746 -1.0190 -6.1446 47 1 1.7907 -1.8312 -6.1523 48 1 -0.7467 -1.2794 -3.8800 49 1 -1.3586 -0.7881 -5.4777 50 1 0.0383 -1.8848 -5.3583 51 1 -2.8980 0.8331 -3.4429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734059505.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:22 Heat of formation + Delta-G solvation = -45.577237 kcal Electronic energy + Delta-G solvation = -28803.069257 eV Core-core repulsion = 24895.898151 eV Total energy + Delta-G solvation = -3907.171106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.68623 -39.35267 -37.62778 -36.53512 -33.76463 -33.64854 -32.21113 -31.13588 -30.89220 -29.28351 -28.46984 -26.06200 -25.89734 -24.09075 -23.25500 -22.82069 -22.74570 -21.13957 -19.71773 -19.27168 -17.18444 -16.94758 -16.79246 -16.63335 -15.91581 -15.38218 -15.29343 -15.15096 -14.82718 -14.39095 -14.25830 -13.89236 -13.64438 -13.37428 -13.21296 -12.93621 -12.74015 -12.70360 -12.60590 -12.19496 -12.09566 -11.91998 -11.85951 -11.60439 -11.43341 -11.27582 -11.12903 -11.10075 -10.91605 -10.84015 -10.71452 -10.42782 -10.29867 -9.89770 -9.80710 -9.72217 -9.17146 -9.04654 -8.95033 -8.63767 -8.33948 -6.84111 -5.79806 -3.27841 1.07985 1.15152 3.14206 3.24752 3.30226 3.39871 3.40073 3.57101 4.19566 4.40792 4.59612 4.68763 4.79248 4.90168 4.95517 5.00937 5.23173 5.27084 5.27459 5.30417 5.33045 5.34381 5.37559 5.40177 5.60685 5.67551 5.69568 5.85333 5.90924 5.94825 6.00952 6.06178 6.09088 6.15698 6.21719 6.26240 6.35995 6.39406 6.41254 6.55551 6.68747 6.75715 6.80404 6.89798 7.11371 7.25110 7.37781 7.70321 7.76257 8.23491 8.31426 8.84177 9.15834 9.78743 10.28963 11.22819 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013640 B = 0.002422 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.248808 B =11557.876796 C =12804.242674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.075 3.925 3 H 0.080 0.920 4 O -0.359 6.359 5 C 0.067 3.933 6 C -0.079 4.079 7 C -0.079 4.079 8 C -0.115 4.115 9 C -0.120 4.120 10 C -0.126 4.126 11 C -0.120 4.120 12 C -0.114 4.114 13 C 0.512 3.488 14 O -0.544 6.544 15 N -0.698 5.698 16 C 0.110 3.890 17 C 0.158 3.842 18 H 0.068 0.932 19 C -0.158 4.158 20 N -0.594 5.594 21 C 0.163 3.837 22 C -0.259 4.259 23 H 0.067 0.933 24 C 0.006 3.994 25 N -0.900 5.900 26 Si 0.900 3.100 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.291 1.291 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.414 0.586 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.045 0.955 47 H 0.052 0.948 48 H 0.029 0.971 49 H 0.042 0.958 50 H -0.002 1.002 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.985 1.707 15.556 18.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 H 0.098 0.902 4 O -0.277 6.277 5 C -0.010 4.010 6 C -0.117 4.117 7 C -0.079 4.079 8 C -0.133 4.133 9 C -0.138 4.138 10 C -0.144 4.144 11 C -0.138 4.138 12 C -0.132 4.132 13 C 0.296 3.704 14 O -0.422 6.422 15 N -0.350 5.350 16 C -0.017 4.017 17 C 0.049 3.951 18 H 0.086 0.914 19 C -0.218 4.218 20 N -0.317 5.317 21 C 0.019 3.981 22 C -0.388 4.388 23 H 0.085 0.915 24 C -0.193 4.193 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.251 0.749 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.048 0.952 49 H 0.060 0.940 50 H 0.016 0.984 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.273 0.771 15.682 18.235 hybrid contribution -0.993 1.578 -0.118 1.868 sum 8.280 2.349 15.564 17.785 Atomic orbital electron populations 1.22208 0.92805 1.03876 1.03674 1.21889 0.95596 0.95784 0.85318 0.90231 1.87995 1.86682 1.34133 1.18915 1.22492 0.99520 0.92812 0.86203 1.20466 1.03351 0.96986 0.90861 1.19788 0.93938 0.97961 0.96196 1.21135 0.97049 0.97171 0.97923 1.21157 0.99083 0.98579 0.94955 1.21162 0.93559 1.00121 0.99518 1.21161 0.97436 0.97350 0.97817 1.21131 0.98747 0.98738 0.94631 1.20207 0.80033 0.85568 0.84544 1.90647 1.41078 1.23645 1.86843 1.45759 1.56384 1.28333 1.04573 1.21929 0.97155 0.96891 0.85687 1.20648 0.86717 0.96759 0.90953 0.91373 1.22169 0.99412 1.00943 0.99250 1.43943 0.98474 1.03340 1.85932 1.20752 0.92002 0.86145 0.99205 1.19249 0.98652 0.85126 1.35822 0.91488 1.25002 0.98630 0.97281 0.98412 1.70088 1.12894 1.32155 1.39309 0.86267 0.79505 0.83786 0.77428 1.20451 1.21747 1.21784 0.91404 0.92149 0.89141 0.93275 0.93087 0.89924 0.89890 0.85877 0.86067 0.86213 0.86055 0.85858 0.74906 0.92926 0.92417 0.92451 0.93575 0.92935 0.95245 0.93966 0.98375 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.48 37.16 0.35 -2.34 16 2 C 0.08 1.22 3.13 -27.88 -0.09 1.14 16 3 H 0.08 1.12 7.79 -51.93 -0.40 0.71 16 4 O -0.36 -5.85 9.53 -55.09 -0.52 -6.37 16 5 C 0.07 0.82 5.73 37.16 0.21 1.03 16 6 C -0.08 -0.86 5.72 -27.89 -0.16 -1.02 16 7 C -0.08 -0.79 5.13 -104.62 -0.54 -1.33 16 8 C -0.11 -1.08 9.70 -39.58 -0.38 -1.46 16 9 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 10 C -0.13 -1.02 10.05 -39.59 -0.40 -1.42 16 11 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 12 C -0.11 -1.07 9.70 -39.58 -0.38 -1.45 16 13 C 0.51 9.95 7.18 -10.99 -0.08 9.87 16 14 O -0.54 -12.36 16.51 -14.30 -0.24 -12.60 16 15 N -0.70 -13.27 5.35 -60.29 -0.32 -13.59 16 16 C 0.11 2.04 4.97 -4.04 -0.02 2.02 16 17 C 0.16 2.96 2.87 -67.93 -0.19 2.77 16 18 H 0.07 1.26 7.86 -51.93 -0.41 0.85 16 19 C -0.16 -2.59 9.18 37.16 0.34 -2.24 16 20 N -0.59 -13.34 2.29 -173.49 -0.40 -13.74 16 21 C 0.16 3.81 8.11 59.85 0.49 4.30 16 22 C -0.26 -6.36 9.32 -15.06 -0.14 -6.50 16 23 H 0.07 1.63 7.82 -52.49 -0.41 1.22 16 24 C 0.01 0.14 5.12 -17.43 -0.09 0.05 16 25 N -0.90 -23.72 10.65 55.49 0.59 -23.13 16 26 Si 0.90 20.32 29.57 -169.99 -5.03 15.30 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.82 7.87 -51.93 -0.41 0.42 16 32 H 0.09 1.62 7.94 -51.93 -0.41 1.21 16 33 H 0.05 0.57 8.08 -51.93 -0.42 0.15 16 34 H 0.05 0.58 7.87 -51.92 -0.41 0.18 16 35 H 0.08 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 38 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 42 H 0.41 8.10 7.69 -40.82 -0.31 7.79 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.17 7.84 -51.93 -0.41 0.76 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 47 H 0.05 0.87 6.66 -51.93 -0.35 0.53 16 48 H 0.03 0.75 7.41 -51.93 -0.39 0.36 16 49 H 0.04 1.07 7.23 -51.93 -0.38 0.69 16 50 H 0.00 -0.05 6.43 -51.93 -0.33 -0.38 16 51 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 416.52 15.07 6.28 6.28 Total: -1.00 -29.50 416.52 -10.33 -39.83 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -8.81 Total: 7.43 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.88 Total: 0.61 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.13 Total: -50.46 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.76 Total: -18.97 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -29.50 -10.33 -39.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734059505.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.749 kcal (2) G-P(sol) polarization free energy of solvation -29.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds