Wall clock time and date at job start Tue Mar 31 2020 17:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47230 * 2 1 4 4 O 1.42894 * 109.47236 * 119.99726 * 2 1 3 5 5 C 1.42900 * 114.00595 * 270.00315 * 4 2 1 6 6 C 1.52996 * 109.47531 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47120 * 180.02562 * 6 5 4 8 8 C 1.38241 * 119.99999 * 269.72669 * 7 6 5 9 9 C 1.38232 * 120.00217 * 179.77074 * 8 7 6 10 10 C 1.38234 * 119.99417 * 0.50185 * 9 8 7 11 11 C 1.38231 * 120.00579 * 359.75082 * 10 9 8 12 12 C 1.38231 * 120.00235 * 90.00543 * 7 6 5 13 13 C 1.50701 * 109.47442 * 240.00176 * 2 1 3 14 14 O 1.21280 * 120.00125 * 245.00291 * 13 2 1 15 15 N 1.34777 * 119.99885 * 65.27504 * 13 2 1 16 16 C 1.46503 * 119.99973 * 179.72938 * 15 13 2 17 17 C 1.52998 * 109.47100 * 179.97438 * 16 15 13 18 18 H 1.08999 * 109.47333 * 64.99824 * 17 16 15 19 19 C 1.53000 * 109.47309 * 184.99705 * 17 16 15 20 20 N 1.46495 * 109.47230 * 305.00091 * 17 16 15 21 21 C 1.46504 * 119.99630 * 299.99787 * 20 17 16 22 22 C 1.36932 * 120.00369 * 120.00277 * 20 17 16 23 23 H 1.07994 * 120.00397 * 23.06731 * 22 20 17 24 24 C 1.38815 * 120.00047 * 203.07231 * 22 20 17 25 25 N 1.31624 * 120.00033 * 11.69531 * 24 22 20 26 26 Si 1.86803 * 120.00143 * 191.69949 * 24 22 20 27 27 H 1.48501 * 109.46880 * 0.02562 * 26 24 22 28 28 H 1.48496 * 109.47078 * 119.99847 * 26 24 22 29 29 H 1.48499 * 109.47161 * 239.99641 * 26 24 22 30 30 H 1.08999 * 109.46797 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47478 * 299.99849 * 1 2 3 32 32 H 1.09001 * 109.47044 * 59.99804 * 1 2 3 33 33 H 1.08995 * 109.46778 * 300.00370 * 5 4 2 34 34 H 1.09008 * 109.46732 * 59.99460 * 5 4 2 35 35 H 1.09002 * 109.47130 * 300.00471 * 6 5 4 36 36 H 1.09001 * 109.46971 * 60.00415 * 6 5 4 37 37 H 1.08005 * 119.99755 * 359.97438 * 8 7 6 38 38 H 1.07994 * 120.00286 * 180.23718 * 9 8 7 39 39 H 1.07999 * 119.99703 * 179.72678 * 10 9 8 40 40 H 1.08000 * 120.00511 * 179.97438 * 11 10 9 41 41 H 1.08000 * 120.00261 * 359.97438 * 12 7 6 42 42 H 0.96999 * 120.00223 * 359.71931 * 15 13 2 43 43 H 1.09006 * 109.46750 * 299.99487 * 16 15 13 44 44 H 1.08997 * 109.47107 * 59.99725 * 16 15 13 45 45 H 1.08990 * 109.47441 * 180.02562 * 19 17 16 46 46 H 1.09008 * 109.46959 * 300.00292 * 19 17 16 47 47 H 1.08999 * 109.46825 * 59.99808 * 19 17 16 48 48 H 1.08999 * 109.47062 * 93.94264 * 21 20 17 49 49 H 1.09005 * 109.46935 * 213.94297 * 21 20 17 50 50 H 1.08998 * 109.47045 * 333.94466 * 21 20 17 51 51 H 0.97001 * 120.00010 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1667 5 6 2.2001 0.1829 2.2941 6 6 2.7079 -0.6407 3.4792 7 6 2.9115 0.2625 4.6682 8 6 4.1356 0.8719 4.8716 9 6 4.3210 1.7041 5.9597 10 6 3.2856 1.9188 6.8499 11 6 2.0632 1.3053 6.6494 12 6 1.8762 0.4771 5.5586 13 6 2.0324 -0.7104 -1.2305 14 8 2.6530 -1.7466 -1.1215 15 7 1.7968 -0.1912 -2.4517 16 6 2.2903 -0.8787 -3.6476 17 6 1.8898 -0.0859 -4.8934 18 1 2.3946 0.8802 -4.8871 19 6 2.2955 -0.8651 -6.1460 20 7 0.4396 0.1210 -4.8952 21 6 -0.4647 -1.0316 -4.9033 22 6 -0.0708 1.3916 -4.8895 23 1 0.5271 2.2154 -5.2503 24 6 -1.3568 1.6209 -4.4197 25 7 -1.9995 0.6727 -3.7715 26 14 -2.1753 3.2752 -4.7078 27 1 -1.2489 4.1621 -5.4564 28 1 -3.4191 3.0816 -5.4956 29 1 -2.5088 3.8967 -3.4010 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.9318 0.9513 2.0450 34 1 1.2537 0.6547 2.5588 35 1 1.9757 -1.4090 3.7281 36 1 3.6541 -1.1127 3.2147 37 1 4.9460 0.7003 4.1786 38 1 5.2761 2.1832 6.1165 39 1 3.4318 2.5655 7.7024 40 1 1.2543 1.4727 7.3452 41 1 0.9211 -0.0022 5.4020 42 1 1.3003 0.6376 -2.5389 43 1 3.3765 -0.9565 -3.5996 44 1 1.8563 -1.8772 -3.6977 45 1 2.0106 -0.3002 -7.0335 46 1 3.3746 -1.0190 -6.1446 47 1 1.7907 -1.8312 -6.1523 48 1 -0.7467 -1.2794 -3.8800 49 1 -1.3586 -0.7881 -5.4777 50 1 0.0383 -1.8848 -5.3583 51 1 -2.8980 0.8331 -3.4429 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734059505.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:21 Heat of formation + Delta-G solvation = -59.960459 kcal Electronic energy + Delta-G solvation = -28803.692960 eV Core-core repulsion = 24895.898151 eV Total energy + Delta-G solvation = -3907.794809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.99528 -40.21855 -38.93786 -38.14531 -35.36092 -34.64857 -33.83221 -32.21212 -31.77105 -30.97188 -29.33375 -27.96466 -27.34963 -25.29042 -24.78266 -24.05924 -23.45920 -21.90023 -21.23752 -20.84248 -18.80069 -18.29000 -18.12519 -17.50990 -17.05293 -16.97754 -16.57756 -16.16413 -15.93539 -15.75987 -15.58534 -15.37212 -14.67376 -14.61171 -14.32111 -14.28948 -14.04806 -13.91294 -13.72098 -13.58421 -13.50485 -13.29320 -13.14782 -12.93233 -12.82010 -12.59616 -12.46271 -12.38979 -12.25609 -12.12160 -12.02775 -11.94552 -11.81503 -11.71278 -11.45111 -10.98322 -10.57831 -10.46701 -9.92287 -9.81920 -9.64527 -8.72184 -7.72618 -5.21856 0.40616 0.50147 1.49998 1.55544 1.61689 1.62074 1.97397 2.55650 2.79627 3.02234 3.40670 3.65895 3.74814 3.86704 3.91946 3.94416 4.02242 4.09533 4.17885 4.19703 4.28029 4.31552 4.41574 4.42588 4.60772 4.63308 4.64680 4.66272 4.71852 4.75292 4.86106 4.87522 4.91922 4.96787 5.11060 5.17560 5.18439 5.20698 5.29635 5.33900 5.49048 5.57617 5.62835 5.63171 5.71464 5.74816 5.79264 6.07330 6.12297 6.40279 6.68201 7.22876 7.29381 7.93541 8.40200 9.28418 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013640 B = 0.002422 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.248808 B =11557.876796 C =12804.242674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.082 3.918 3 H 0.107 0.893 4 O -0.381 6.381 5 C 0.063 3.937 6 C -0.073 4.073 7 C -0.092 4.092 8 C -0.128 4.128 9 C -0.126 4.126 10 C -0.129 4.129 11 C -0.126 4.126 12 C -0.127 4.127 13 C 0.507 3.493 14 O -0.581 6.581 15 N -0.696 5.696 16 C 0.114 3.886 17 C 0.158 3.842 18 H 0.076 0.924 19 C -0.150 4.150 20 N -0.601 5.601 21 C 0.182 3.818 22 C -0.257 4.257 23 H 0.072 0.928 24 C -0.039 4.039 25 N -0.924 5.924 26 Si 0.956 3.044 27 H -0.270 1.270 28 H -0.303 1.303 29 H -0.293 1.293 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.128 0.872 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.130 0.870 42 H 0.412 0.588 43 H 0.069 0.931 44 H 0.039 0.961 45 H 0.054 0.946 46 H 0.076 0.924 47 H 0.047 0.953 48 H 0.001 0.999 49 H 0.015 0.985 50 H 0.019 0.981 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.186 3.247 16.326 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.021 3.979 3 H 0.124 0.876 4 O -0.300 6.300 5 C -0.013 4.013 6 C -0.110 4.110 7 C -0.092 4.092 8 C -0.146 4.146 9 C -0.144 4.144 10 C -0.147 4.147 11 C -0.144 4.144 12 C -0.145 4.145 13 C 0.293 3.707 14 O -0.462 6.462 15 N -0.347 5.347 16 C -0.012 4.012 17 C 0.050 3.950 18 H 0.094 0.906 19 C -0.209 4.209 20 N -0.324 5.324 21 C 0.037 3.963 22 C -0.387 4.387 23 H 0.090 0.910 24 C -0.235 4.235 25 N -0.570 5.570 26 Si 0.786 3.214 27 H -0.195 1.195 28 H -0.231 1.231 29 H -0.220 1.220 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.146 0.854 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.158 0.842 41 H 0.147 0.853 42 H 0.249 0.751 43 H 0.087 0.913 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.095 0.905 47 H 0.066 0.934 48 H 0.019 0.981 49 H 0.033 0.967 50 H 0.038 0.962 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.505 2.329 16.439 19.647 hybrid contribution -1.301 1.091 -0.331 1.730 sum 9.204 3.420 16.108 18.864 Atomic orbital electron populations 1.22077 0.92733 1.02680 1.03891 1.21817 0.95371 0.96490 0.84244 0.87578 1.87977 1.86709 1.35653 1.19666 1.22704 1.00399 0.92848 0.85333 1.20385 1.02836 0.96991 0.90804 1.19759 0.94670 0.98567 0.96217 1.21314 0.97051 0.97559 0.98647 1.21450 1.00148 0.98247 0.94548 1.21509 0.93242 0.99963 0.99997 1.21456 0.98303 0.96887 0.97776 1.21314 0.98946 0.99219 0.95005 1.20810 0.79237 0.85164 0.85463 1.90619 1.42887 1.25291 1.87401 1.45813 1.55978 1.28076 1.04851 1.21892 0.97941 0.95833 0.85527 1.20830 0.84441 0.97674 0.92029 0.90604 1.22064 1.01341 1.00000 0.97472 1.44056 1.00017 1.02468 1.85883 1.20411 0.91522 0.87214 0.97148 1.19490 0.98652 0.85952 1.34615 0.91002 1.25571 0.99372 0.99684 0.98861 1.70236 1.12683 1.33571 1.40552 0.85384 0.78114 0.81053 0.76859 1.19489 1.23071 1.21978 0.93286 0.89490 0.91214 0.92418 0.92021 0.90198 0.90500 0.85369 0.84158 0.83986 0.84177 0.85252 0.75135 0.91255 0.94240 0.92666 0.90549 0.93442 0.98053 0.96653 0.96236 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 9.48 71.98 0.68 -4.30 16 2 C 0.08 2.61 3.13 29.85 0.09 2.71 16 3 H 0.11 2.80 7.79 -2.38 -0.02 2.78 16 4 O -0.38 -12.26 9.53 -129.99 -1.24 -13.50 16 5 C 0.06 1.50 5.73 71.98 0.41 1.91 16 6 C -0.07 -1.55 5.72 29.85 0.17 -1.38 16 7 C -0.09 -1.77 5.13 -19.87 -0.10 -1.87 16 8 C -0.13 -2.26 9.70 22.27 0.22 -2.04 16 9 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 10 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 11 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 12 C -0.13 -2.23 9.70 22.27 0.22 -2.02 16 13 C 0.51 19.74 7.18 87.66 0.63 20.37 16 14 O -0.58 -26.67 16.51 15.96 0.26 -26.41 16 15 N -0.70 -26.31 5.35 -463.05 -2.48 -28.78 16 16 C 0.11 4.15 4.97 86.38 0.43 4.58 16 17 C 0.16 5.67 2.87 44.99 0.13 5.80 16 18 H 0.08 2.64 7.86 -2.39 -0.02 2.62 16 19 C -0.15 -4.54 9.18 71.98 0.66 -3.88 16 20 N -0.60 -26.70 2.29 -702.79 -1.61 -28.31 16 21 C 0.18 8.59 8.11 127.77 1.04 9.62 16 22 C -0.26 -12.43 9.32 84.04 0.78 -11.65 16 23 H 0.07 3.38 7.82 -2.91 -0.02 3.36 16 24 C -0.04 -1.95 5.12 84.86 0.43 -1.51 16 25 N -0.92 -49.57 10.65 21.65 0.23 -49.34 16 26 Si 0.96 41.69 29.57 68.60 2.03 43.72 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 29 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.09 2.27 7.87 -2.39 -0.02 2.25 16 32 H 0.07 2.53 7.94 -2.39 -0.02 2.51 16 33 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 34 H 0.06 1.32 7.87 -2.38 -0.02 1.30 16 35 H 0.08 1.70 8.09 -2.39 -0.02 1.68 16 36 H 0.08 1.69 8.08 -2.39 -0.02 1.67 16 37 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 39 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 41 H 0.13 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.41 16.02 7.69 -92.71 -0.71 15.31 16 43 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 44 H 0.04 1.59 7.84 -2.39 -0.02 1.57 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 47 H 0.05 1.48 6.66 -2.39 -0.02 1.47 16 48 H 0.00 0.06 7.41 -2.39 -0.02 0.04 16 49 H 0.01 0.77 7.23 -2.38 -0.02 0.75 16 50 H 0.02 0.81 6.43 -2.39 -0.02 0.80 16 51 H 0.24 13.04 8.31 -92.71 -0.77 12.27 16 Total: -1.00 -63.41 416.52 3.84 -59.56 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 0.18 Total: 31.67 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 6.46 Total: 11.40 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -3.85 Total: -106.43 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -0.97 Total: -39.91 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -63.41 3.84 -59.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734059505.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.399 kcal (2) G-P(sol) polarization free energy of solvation -63.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds