Wall clock time and date at job start Tue Mar 31 2020 18:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47393 * 2 1 4 4 C 1.36938 * 119.99805 * 272.52944 * 3 2 1 5 5 H 1.08008 * 120.00190 * 38.47799 * 4 3 2 6 6 C 1.38814 * 120.00201 * 218.47652 * 4 3 2 7 7 N 1.31622 * 119.99858 * 22.07420 * 6 4 3 8 8 Si 1.86800 * 120.00276 * 202.07407 * 6 4 3 9 9 H 1.48497 * 109.47141 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.46976 * 120.00267 * 8 6 4 11 11 H 1.48499 * 109.46942 * 239.99960 * 8 6 4 12 12 C 1.46495 * 120.00430 * 92.52428 * 3 2 1 13 13 C 1.52995 * 109.47405 * 270.00659 * 12 3 2 14 14 C 1.52999 * 109.47305 * 179.97438 * 13 12 3 15 15 N 1.46500 * 109.47034 * 179.97438 * 14 13 12 16 16 C 1.34783 * 119.99661 * 180.02562 * 15 14 13 17 17 O 1.21276 * 120.00223 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99523 * 180.02562 * 16 15 14 19 19 H 1.08994 * 109.47157 * 304.99356 * 18 16 15 20 20 C 1.52999 * 109.47641 * 64.99998 * 18 16 15 21 21 O 1.42899 * 109.46787 * 184.99598 * 18 16 15 22 22 C 1.35903 * 117.00277 * 154.94112 * 21 18 16 23 23 C 1.38737 * 120.04981 * 5.51281 * 22 21 18 24 24 C 1.38145 * 119.94075 * 179.97438 * 23 22 21 25 25 C 1.38267 * 120.05555 * 0.27331 * 24 23 22 26 26 C 1.50705 * 119.94148 * 179.72886 * 25 24 23 27 27 C 1.38265 * 120.11318 * 359.45035 * 25 24 23 28 28 C 1.38144 * 120.05483 * 0.55030 * 27 25 24 29 29 H 1.08994 * 109.47229 * 300.00569 * 1 2 3 30 30 H 1.09000 * 109.46776 * 60.00456 * 1 2 3 31 31 H 1.09000 * 109.46873 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47420 * 239.99957 * 2 1 3 33 33 H 1.09003 * 109.47306 * 120.00072 * 2 1 3 34 34 H 0.96994 * 120.00360 * 179.97438 * 7 6 4 35 35 H 1.08996 * 109.47429 * 150.00272 * 12 3 2 36 36 H 1.09007 * 109.46564 * 30.00410 * 12 3 2 37 37 H 1.08996 * 109.47143 * 59.99438 * 13 12 3 38 38 H 1.09007 * 109.47057 * 299.99450 * 13 12 3 39 39 H 1.09005 * 109.47159 * 59.99986 * 14 13 12 40 40 H 1.08993 * 109.47093 * 299.99875 * 14 13 12 41 41 H 0.96996 * 120.00121 * 0.02562 * 15 14 13 42 42 H 1.08998 * 109.47534 * 179.97438 * 20 18 16 43 43 H 1.09004 * 109.46460 * 299.99927 * 20 18 16 44 44 H 1.09002 * 109.47073 * 59.99328 * 20 18 16 45 45 H 1.07993 * 120.03249 * 359.95187 * 23 22 21 46 46 H 1.08003 * 119.97150 * 180.02562 * 24 23 22 47 47 H 1.08998 * 109.47459 * 89.99851 * 26 25 24 48 48 H 1.09001 * 109.46637 * 209.99870 * 26 25 24 49 49 H 1.08997 * 109.47197 * 329.99654 * 26 25 24 50 50 H 1.07995 * 119.97196 * 180.25840 * 27 25 24 51 51 H 1.07997 * 120.02949 * 179.70334 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1973 2.0441 -1.1848 5 1 1.4930 1.9069 -1.9921 6 6 3.2837 2.8925 -1.3483 7 7 4.3502 2.7496 -0.5902 8 14 3.2323 4.2370 -2.6441 9 1 1.9314 4.1866 -3.3583 10 1 3.3876 5.5611 -1.9900 11 1 4.3375 4.0316 -3.6145 12 6 2.3153 2.0532 1.2674 13 6 1.0600 2.7675 1.7723 14 6 1.3700 3.4688 3.0963 15 7 0.1681 4.1532 3.5794 16 6 0.2048 4.8432 4.7366 17 8 1.2325 4.8971 5.3782 18 6 -1.0317 5.5467 5.2338 19 1 -1.4019 6.2203 4.4611 20 6 -2.1082 4.5119 5.5670 21 8 -0.7131 6.2974 6.4073 22 6 -1.5023 7.3675 6.6884 23 6 -2.6282 7.6217 5.9186 24 6 -3.4291 8.7098 6.2067 25 6 -3.1063 9.5484 7.2576 26 6 -3.9785 10.7381 7.5658 27 6 -1.9880 9.2939 8.0298 28 6 -1.1838 8.2071 7.7459 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.1095 3.3422 -0.7046 35 1 3.1113 2.7819 1.1145 36 1 2.6345 1.3155 2.0037 37 1 0.2640 2.0387 1.9251 38 1 0.7408 3.5052 1.0360 39 1 2.1661 4.1975 2.9438 40 1 1.6889 2.7309 3.8323 41 1 -0.6540 4.1098 3.0664 42 1 -3.0024 5.0208 5.9271 43 1 -2.3511 3.9393 4.6719 44 1 -1.7379 3.8383 6.3398 45 1 -2.8780 6.9698 5.0947 46 1 -4.3059 8.9080 5.6080 47 1 -4.7533 10.4468 8.2748 48 1 -3.3700 11.5322 7.9985 49 1 -4.4428 11.0960 6.6469 50 1 -1.7404 9.9479 8.8527 51 1 -0.3078 8.0115 8.3464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752229238.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:26 Heat of formation + Delta-G solvation = -42.089581 kcal Electronic energy + Delta-G solvation = -28182.413797 eV Core-core repulsion = 24275.393928 eV Total energy + Delta-G solvation = -3907.019870 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.82315 -39.46552 -37.80794 -36.44421 -34.83972 -32.99286 -31.95837 -31.87044 -31.29649 -30.63918 -28.53596 -26.80538 -25.68176 -24.47590 -23.61280 -22.98074 -21.56467 -21.09342 -20.43563 -19.88340 -18.60364 -17.44020 -16.74106 -16.04845 -15.97584 -15.69623 -15.33807 -15.14278 -14.80564 -14.66395 -14.21867 -14.05622 -13.88062 -13.81357 -13.54585 -13.41803 -13.27990 -12.76933 -12.72206 -12.56350 -12.36544 -12.31596 -11.96298 -11.80680 -11.62547 -11.48122 -11.21978 -11.15361 -11.06445 -11.02139 -10.78387 -10.60242 -10.45564 -10.07123 -9.78853 -9.63417 -9.55506 -9.29150 -8.93618 -8.48973 -8.30645 -6.57863 -5.81098 -3.40402 1.04340 1.12829 2.49254 2.56820 3.32639 3.42183 3.43866 3.45727 3.50965 4.34486 4.45216 4.48197 4.55515 4.57086 4.63816 4.68870 4.93649 5.04223 5.09544 5.21483 5.27107 5.27463 5.33709 5.37559 5.42078 5.59609 5.60982 5.71676 5.75271 5.79695 5.94211 6.00882 6.05507 6.07036 6.23279 6.31340 6.32375 6.38886 6.41755 6.48386 6.55307 6.71018 6.72924 6.89512 7.05640 7.13118 7.14919 7.52835 7.63112 7.81078 8.20839 8.50967 9.17782 9.79814 10.39602 11.18516 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015238 B = 0.002069 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.111204 B =13532.754532 C =14195.649878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.262 4.262 5 H 0.059 0.941 6 C 0.014 3.986 7 N -0.884 5.884 8 Si 0.893 3.107 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.153 3.847 13 C -0.147 4.147 14 C 0.121 3.879 15 N -0.720 5.720 16 C 0.513 3.487 17 O -0.519 6.519 18 C 0.066 3.934 19 H 0.098 0.902 20 C -0.175 4.175 21 O -0.284 6.284 22 C 0.128 3.872 23 C -0.209 4.209 24 C -0.080 4.080 25 C -0.129 4.129 26 C -0.109 4.109 27 C -0.080 4.080 28 C -0.146 4.146 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.255 0.745 35 H 0.092 0.908 36 H 0.026 0.974 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.399 0.601 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.130 0.870 46 H 0.124 0.876 47 H 0.067 0.933 48 H 0.064 0.936 49 H 0.064 0.936 50 H 0.128 0.872 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.926 9.974 15.176 25.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 N -0.304 5.304 4 C -0.392 4.392 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.526 5.526 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.026 3.974 13 C -0.188 4.188 14 C -0.002 4.002 15 N -0.373 5.373 16 C 0.296 3.704 17 O -0.394 6.394 18 C 0.006 3.994 19 H 0.115 0.885 20 C -0.233 4.233 21 O -0.197 6.197 22 C 0.082 3.918 23 C -0.227 4.227 24 C -0.098 4.098 25 C -0.130 4.130 26 C -0.165 4.165 27 C -0.098 4.098 28 C -0.164 4.164 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.233 0.767 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.148 0.852 46 H 0.142 0.858 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.146 0.854 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.792 9.985 15.729 25.082 hybrid contribution -0.589 0.713 -1.125 1.457 sum -17.381 10.698 14.604 25.096 Atomic orbital electron populations 1.22384 1.00225 0.98902 1.01048 1.20856 0.91594 0.87429 0.98794 1.43731 1.76418 1.08175 1.02085 1.18996 1.04759 1.22558 0.92890 0.92345 1.25220 0.94231 1.01305 0.97933 1.70032 1.03546 1.37503 1.41511 0.86390 0.77654 0.82321 0.81379 1.20097 1.21392 1.21606 1.20746 0.94311 0.96347 0.86037 1.22566 1.02641 0.99775 0.93768 1.21541 0.86132 0.95981 0.96518 1.46062 1.15564 1.52746 1.22887 1.20010 0.89043 0.79740 0.81564 1.90746 1.32212 1.60275 1.56169 1.22238 0.94832 0.94127 0.88219 0.88483 1.22330 0.97912 0.99107 1.03915 1.86225 1.52755 1.38460 1.42215 1.19096 0.90156 0.87478 0.95043 1.21308 0.97039 1.01615 1.02783 1.20823 0.98717 0.93610 0.96626 1.19842 0.97445 0.98380 0.97295 1.20714 0.98702 0.95155 1.01978 1.20854 0.93824 0.96341 0.98821 1.20474 1.02105 0.95367 0.98493 0.93805 0.93298 0.94631 0.93698 0.94966 0.93526 0.89058 0.95569 0.92874 0.91636 0.91327 0.91744 0.76708 0.90683 0.90078 0.90563 0.85196 0.85798 0.91476 0.91680 0.91731 0.85381 0.84973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 10.23 37.16 0.38 -2.49 16 2 C 0.14 2.87 6.43 -4.04 -0.03 2.85 16 3 N -0.58 -13.94 2.42 -173.24 -0.42 -14.36 16 4 C -0.26 -6.94 9.45 -15.06 -0.14 -7.08 16 5 H 0.06 1.56 7.92 -52.48 -0.42 1.14 16 6 C 0.01 0.38 4.93 -17.43 -0.09 0.29 16 7 N -0.88 -25.08 11.58 55.49 0.64 -24.44 16 8 Si 0.89 21.13 29.61 -169.99 -5.03 16.10 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.15 3.38 5.34 -4.05 -0.02 3.36 16 13 C -0.15 -2.61 5.65 -26.73 -0.15 -2.76 16 14 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 15 N -0.72 -9.61 5.52 -60.29 -0.33 -9.94 16 16 C 0.51 7.57 7.18 -10.98 -0.08 7.49 16 17 O -0.52 -10.10 16.51 -14.30 -0.24 -10.34 16 18 C 0.07 0.74 2.63 -27.88 -0.07 0.67 16 19 H 0.10 0.88 6.31 -51.93 -0.33 0.56 16 20 C -0.18 -1.48 9.13 37.16 0.34 -1.14 16 21 O -0.28 -3.84 9.34 -39.30 -0.37 -4.21 16 22 C 0.13 1.48 6.60 -39.21 -0.26 1.22 16 23 C -0.21 -1.98 8.25 -39.43 -0.33 -2.31 16 24 C -0.08 -0.67 9.69 -39.60 -0.38 -1.06 16 25 C -0.13 -1.07 5.88 -104.60 -0.62 -1.69 16 26 C -0.11 -0.62 10.01 36.01 0.36 -0.26 16 27 C -0.08 -0.70 9.69 -39.61 -0.38 -1.08 16 28 C -0.15 -1.55 9.99 -39.43 -0.39 -1.94 16 29 H 0.04 0.72 6.43 -51.93 -0.33 0.39 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.96 8.06 -51.93 -0.42 0.54 16 33 H 0.03 0.63 7.86 -51.93 -0.41 0.22 16 34 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.09 2.33 5.61 -51.93 -0.29 2.04 16 36 H 0.03 0.56 7.87 -51.93 -0.41 0.15 16 37 H 0.05 0.87 6.43 -51.93 -0.33 0.54 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.40 4.11 8.26 -40.82 -0.34 3.77 16 42 H 0.07 0.54 6.92 -51.93 -0.36 0.18 16 43 H 0.08 0.53 7.93 -51.93 -0.41 0.12 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.13 1.00 5.43 -52.49 -0.29 0.71 16 46 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 47 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 49 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 50 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 51 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 413.74 15.07 6.23 6.23 Total: -1.00 -32.43 413.74 -9.93 -42.35 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -8.53 Total: 2.57 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.88 Total: -3.97 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.11 Total: -48.74 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.60 Total: -14.55 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.43 -9.93 -42.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752229238.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.265 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds