Wall clock time and date at job start Tue Mar 31 2020 18:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47434 * 2 1 4 4 C 1.36939 * 119.99851 * 264.29133 * 3 2 1 5 5 H 1.08000 * 119.99548 * 188.64044 * 4 3 2 6 6 C 1.38813 * 120.00141 * 8.63158 * 4 3 2 7 7 N 1.31614 * 120.00021 * 24.60426 * 6 4 3 8 8 Si 1.86798 * 119.99937 * 204.60938 * 6 4 3 9 9 H 1.48502 * 109.47407 * 85.02473 * 8 6 4 10 10 H 1.48500 * 109.47045 * 205.02675 * 8 6 4 11 11 H 1.48495 * 109.47010 * 325.02515 * 8 6 4 12 12 C 1.46494 * 119.99959 * 84.28284 * 3 2 1 13 13 C 1.53004 * 109.47263 * 270.00175 * 12 3 2 14 14 C 1.53003 * 109.46659 * 179.97438 * 13 12 3 15 15 N 1.46499 * 109.46848 * 180.02562 * 14 13 12 16 16 C 1.34770 * 120.00383 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99980 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00578 * 179.97438 * 16 15 14 19 19 O 1.42900 * 109.47891 * 180.02562 * 18 16 15 20 20 C 1.35897 * 117.00269 * 180.02562 * 19 18 16 21 21 C 1.38753 * 120.05644 * 359.97438 * 20 19 18 22 22 C 1.38117 * 119.93952 * 180.27306 * 21 20 19 23 23 C 1.38294 * 120.06051 * 359.49455 * 22 21 20 24 24 C 1.50696 * 119.94688 * 180.25107 * 23 22 21 25 25 C 1.38237 * 120.10725 * 0.50856 * 23 22 21 26 26 C 1.50699 * 119.97163 * 179.72435 * 25 23 22 27 27 C 1.38174 * 120.05697 * 359.74273 * 25 23 22 28 28 H 1.09006 * 109.46575 * 60.00369 * 1 2 3 29 29 H 1.08993 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47140 * 300.00745 * 1 2 3 31 31 H 1.08999 * 109.47223 * 239.99801 * 2 1 3 32 32 H 1.09009 * 109.47020 * 119.99885 * 2 1 3 33 33 H 0.96995 * 120.00591 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47057 * 150.00441 * 12 3 2 35 35 H 1.09002 * 109.47448 * 30.00698 * 12 3 2 36 36 H 1.08997 * 109.46975 * 60.00604 * 13 12 3 37 37 H 1.08996 * 109.46885 * 300.00064 * 13 12 3 38 38 H 1.09003 * 109.47320 * 60.00475 * 14 13 12 39 39 H 1.08996 * 109.47562 * 299.99696 * 14 13 12 40 40 H 0.97007 * 119.99635 * 0.02562 * 15 14 13 41 41 H 1.09007 * 109.47164 * 60.00106 * 18 16 15 42 42 H 1.09002 * 109.47109 * 300.00763 * 18 16 15 43 43 H 1.07992 * 120.02810 * 359.97438 * 21 20 19 44 44 H 1.08010 * 119.96945 * 179.72732 * 22 21 20 45 45 H 1.09005 * 109.46957 * 270.25951 * 24 23 22 46 46 H 1.09006 * 109.46800 * 30.25327 * 24 23 22 47 47 H 1.08996 * 109.47369 * 150.25146 * 24 23 22 48 48 H 1.09003 * 109.47038 * 270.02080 * 26 25 23 49 49 H 1.08993 * 109.47471 * 30.01873 * 26 25 23 50 50 H 1.08998 * 109.47273 * 150.01897 * 26 25 23 51 51 H 1.08003 * 120.02477 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3579 1.9874 -1.1801 5 1 2.8472 2.9501 -1.1713 6 6 2.0733 1.3643 -2.3874 7 7 1.0961 0.4857 -2.4603 8 14 3.0773 1.7729 -3.9087 9 1 4.3049 0.9376 -3.9308 10 1 2.2692 1.4974 -5.1238 11 1 3.4559 3.2085 -3.8811 12 6 2.1435 2.1139 1.2624 13 6 0.8338 2.8475 1.5582 14 6 0.9643 3.6122 2.8770 15 7 -0.2899 4.3141 3.1606 16 6 -0.4079 5.0584 4.2779 17 8 0.5245 5.1475 5.0485 18 6 -1.6979 5.7809 4.5694 19 8 -1.5758 6.4960 5.8006 20 6 -2.6592 7.2058 6.2119 21 6 -3.8161 7.2144 5.4459 22 6 -4.9139 7.9411 5.8634 23 6 -4.8644 8.6515 7.0489 24 6 -6.0656 9.4390 7.5048 25 6 -3.7129 8.6446 7.8138 26 6 -3.6601 9.4248 9.1020 27 6 -2.6101 7.9234 7.3979 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8901 33 1 0.8969 0.0506 -3.3039 34 1 2.9552 2.8371 1.1838 35 1 2.3579 1.4133 2.0695 36 1 0.0220 2.1243 1.6368 37 1 0.6195 3.5481 0.7512 38 1 1.7761 4.3353 2.7989 39 1 1.1783 2.9113 3.6838 40 1 -1.0355 4.2431 2.5441 41 1 -2.5097 5.0577 4.6479 42 1 -1.9123 6.4815 3.7624 43 1 -3.8565 6.6571 4.5217 44 1 -5.8132 7.9517 5.2653 45 1 -6.0105 10.4509 7.1030 46 1 -6.9744 8.9551 7.1470 47 1 -6.0808 9.4807 8.5938 48 1 -3.3029 10.4348 8.9007 49 1 -4.6575 9.4726 9.5390 50 1 -2.9818 8.9315 9.7981 51 1 -1.7107 7.9187 7.9957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752231053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:40 Heat of formation + Delta-G solvation = -32.603028 kcal Electronic energy + Delta-G solvation = -27523.490532 eV Core-core repulsion = 23616.882030 eV Total energy + Delta-G solvation = -3906.608502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.70872 -39.58432 -38.03697 -36.57269 -34.96133 -33.02393 -32.43851 -32.14111 -30.59993 -29.46365 -28.60406 -27.37799 -26.27766 -25.06457 -23.33059 -22.55970 -21.28625 -21.14686 -20.47179 -19.94301 -18.27892 -17.32273 -16.80483 -16.62049 -16.17276 -15.83707 -15.48426 -15.21848 -14.87637 -14.60605 -14.45260 -14.03520 -13.98481 -13.64276 -13.47638 -13.16551 -13.13706 -13.06916 -12.70761 -12.49785 -12.32239 -12.30057 -11.88017 -11.69368 -11.58293 -11.43896 -11.32567 -11.14520 -11.07527 -10.89034 -10.73121 -10.42581 -10.33531 -9.93529 -9.78501 -9.59180 -9.35821 -9.11277 -9.04066 -8.36995 -8.33081 -6.91018 -5.78134 -3.09069 0.99284 1.11052 2.39737 2.48751 3.38497 3.39025 3.46253 3.46856 3.53276 4.37619 4.43753 4.49295 4.55895 4.61599 4.72382 4.75685 4.80861 4.87850 4.99640 5.14877 5.22174 5.28943 5.33093 5.37469 5.40456 5.46033 5.48533 5.66601 5.75676 5.76814 5.85054 6.00403 6.06200 6.07629 6.14273 6.32331 6.38480 6.44665 6.50766 6.58910 6.73099 6.84906 6.91644 7.07466 7.09445 7.16215 7.43940 7.65904 7.76341 8.07818 8.11914 8.35601 9.23418 9.86577 10.31446 11.25787 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023273 B = 0.001608 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.844691 B =17409.701374 C =17684.366432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.166 3.834 3 N -0.597 5.597 4 C -0.248 4.248 5 H 0.073 0.927 6 C -0.004 4.004 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.156 3.844 13 C -0.155 4.155 14 C 0.121 3.879 15 N -0.721 5.721 16 C 0.512 3.488 17 O -0.522 6.522 18 C 0.041 3.959 19 O -0.289 6.289 20 C 0.130 3.870 21 C -0.212 4.212 22 C -0.076 4.076 23 C -0.129 4.129 24 C -0.112 4.112 25 C -0.048 4.048 26 C -0.118 4.118 27 C -0.147 4.147 28 H 0.090 0.910 29 H 0.018 0.982 30 H 0.013 0.987 31 H 0.087 0.913 32 H 0.002 0.998 33 H 0.251 0.749 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.402 0.598 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.068 0.932 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.379 14.709 18.721 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.318 5.318 4 C -0.377 4.377 5 H 0.091 0.909 6 C -0.201 4.201 7 N -0.543 5.543 8 Si 0.727 3.273 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.028 3.972 13 C -0.196 4.196 14 C -0.002 4.002 15 N -0.374 5.374 16 C 0.296 3.704 17 O -0.397 6.397 18 C -0.038 4.038 19 O -0.201 6.201 20 C 0.084 3.916 21 C -0.231 4.231 22 C -0.094 4.094 23 C -0.129 4.129 24 C -0.168 4.168 25 C -0.048 4.048 26 C -0.175 4.175 27 C -0.165 4.165 28 H 0.108 0.892 29 H 0.037 0.963 30 H 0.031 0.969 31 H 0.105 0.895 32 H 0.020 0.980 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.236 0.764 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.087 0.913 51 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.513 14.640 19.216 27.680 hybrid contribution -0.241 0.051 -1.527 1.547 sum -13.754 14.691 17.688 26.793 Atomic orbital electron populations 1.22414 0.99401 0.98155 1.00971 1.20806 0.92441 0.84512 0.98189 1.44255 1.75732 1.10214 1.01580 1.19290 1.31234 1.03626 0.83591 0.90881 1.24715 0.97988 1.00053 0.97311 1.70144 1.27334 1.31984 1.24871 0.86383 0.80369 0.77832 0.82758 1.21623 1.22018 1.20811 1.20671 0.93592 0.94193 0.88783 1.22741 1.03023 0.99721 0.94100 1.21567 0.84735 0.95370 0.98553 1.46016 1.17982 1.49983 1.23435 1.19983 0.88734 0.79798 0.81931 1.90750 1.40196 1.61700 1.47081 1.22510 0.97636 0.96574 0.87092 1.86159 1.35113 1.60685 1.38175 1.19025 0.86074 0.92432 0.94047 1.21249 0.94067 1.05778 1.02016 1.20804 0.97779 0.95373 0.95414 1.19671 0.95936 1.01330 0.95942 1.20784 0.95060 0.99315 1.01647 1.19537 0.92350 0.96508 0.96433 1.20884 1.03028 0.99638 0.93901 1.20289 0.99824 1.00395 0.96032 0.89167 0.96320 0.96851 0.89498 0.97958 0.93844 0.93487 0.94163 0.91528 0.91366 0.91593 0.91726 0.76388 0.88955 0.88935 0.85351 0.85718 0.91429 0.91796 0.91293 0.90806 0.90883 0.91296 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.58 37.16 0.36 -2.97 16 2 C 0.17 3.89 5.64 -4.04 -0.02 3.87 16 3 N -0.60 -14.17 2.54 -173.23 -0.44 -14.61 16 4 C -0.25 -6.50 9.70 -15.06 -0.15 -6.65 16 5 H 0.07 1.89 7.93 -52.49 -0.42 1.47 16 6 C 0.00 -0.10 4.91 -17.43 -0.09 -0.18 16 7 N -0.90 -24.43 8.54 55.49 0.47 -23.96 16 8 Si 0.90 21.20 29.62 -169.99 -5.03 16.17 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.16 3.01 5.71 -4.04 -0.02 2.98 16 13 C -0.16 -2.56 5.53 -26.73 -0.15 -2.71 16 14 C 0.12 1.74 5.67 -4.04 -0.02 1.72 16 15 N -0.72 -8.85 5.56 -60.29 -0.33 -9.19 16 16 C 0.51 6.94 7.91 -10.99 -0.09 6.86 16 17 O -0.52 -9.47 16.50 -14.36 -0.24 -9.70 16 18 C 0.04 0.41 5.22 36.00 0.19 0.60 16 19 O -0.29 -3.73 9.67 -39.33 -0.38 -4.11 16 20 C 0.13 1.45 6.69 -39.22 -0.26 1.19 16 21 C -0.21 -1.95 9.04 -39.44 -0.36 -2.30 16 22 C -0.08 -0.62 9.69 -39.60 -0.38 -1.01 16 23 C -0.13 -1.04 5.88 -104.60 -0.62 -1.66 16 24 C -0.11 -0.61 9.60 36.00 0.35 -0.27 16 25 C -0.05 -0.42 5.88 -104.65 -0.62 -1.03 16 26 C -0.12 -0.70 9.60 36.01 0.35 -0.35 16 27 C -0.15 -1.52 9.64 -39.43 -0.38 -1.90 16 28 H 0.09 2.28 6.28 -51.93 -0.33 1.95 16 29 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.01 0.26 5.98 -51.93 -0.31 -0.05 16 31 H 0.09 2.29 5.87 -51.93 -0.31 1.98 16 32 H 0.00 0.05 7.98 -51.92 -0.41 -0.37 16 33 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.05 0.89 8.03 -51.93 -0.42 0.48 16 35 H 0.04 0.73 7.95 -51.93 -0.41 0.31 16 36 H 0.07 1.14 5.93 -51.93 -0.31 0.83 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.40 3.88 8.47 -40.82 -0.35 3.54 16 41 H 0.09 0.70 7.66 -51.93 -0.40 0.31 16 42 H 0.09 0.72 7.66 -51.93 -0.40 0.32 16 43 H 0.13 0.91 6.30 -52.49 -0.33 0.58 16 44 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.30 8.09 -51.93 -0.42 -0.12 16 47 H 0.07 0.31 5.94 -51.93 -0.31 0.01 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.34 5.94 -51.93 -0.31 0.03 16 50 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 51 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 LS Contribution 407.01 15.07 6.13 6.13 Total: -1.00 -31.81 407.01 -10.09 -41.90 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.36 Total: 1.18 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.91 Total: -3.82 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.30 Total: -47.75 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.62 Total: -13.81 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.81 -10.09 -41.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752231053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.294 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds