Wall clock time and date at job start Tue Mar 31 2020 18:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.47434 * 2 1 4 4 C 1.36939 * 119.99851 * 264.29133 * 3 2 1 5 5 H 1.08000 * 119.99548 * 188.64044 * 4 3 2 6 6 C 1.38813 * 120.00141 * 8.63158 * 4 3 2 7 7 N 1.31614 * 120.00021 * 24.60426 * 6 4 3 8 8 Si 1.86798 * 119.99937 * 204.60938 * 6 4 3 9 9 H 1.48502 * 109.47407 * 85.02473 * 8 6 4 10 10 H 1.48500 * 109.47045 * 205.02675 * 8 6 4 11 11 H 1.48495 * 109.47010 * 325.02515 * 8 6 4 12 12 C 1.46494 * 119.99959 * 84.28284 * 3 2 1 13 13 C 1.53004 * 109.47263 * 270.00175 * 12 3 2 14 14 C 1.53003 * 109.46659 * 179.97438 * 13 12 3 15 15 N 1.46499 * 109.46848 * 180.02562 * 14 13 12 16 16 C 1.34770 * 120.00383 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99980 * 0.02562 * 16 15 14 18 18 C 1.50698 * 120.00578 * 179.97438 * 16 15 14 19 19 O 1.42900 * 109.47891 * 180.02562 * 18 16 15 20 20 C 1.35897 * 117.00269 * 180.02562 * 19 18 16 21 21 C 1.38753 * 120.05644 * 359.97438 * 20 19 18 22 22 C 1.38117 * 119.93952 * 180.27306 * 21 20 19 23 23 C 1.38294 * 120.06051 * 359.49455 * 22 21 20 24 24 C 1.50696 * 119.94688 * 180.25107 * 23 22 21 25 25 C 1.38237 * 120.10725 * 0.50856 * 23 22 21 26 26 C 1.50699 * 119.97163 * 179.72435 * 25 23 22 27 27 C 1.38174 * 120.05697 * 359.74273 * 25 23 22 28 28 H 1.09006 * 109.46575 * 60.00369 * 1 2 3 29 29 H 1.08993 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47140 * 300.00745 * 1 2 3 31 31 H 1.08999 * 109.47223 * 239.99801 * 2 1 3 32 32 H 1.09009 * 109.47020 * 119.99885 * 2 1 3 33 33 H 0.96995 * 120.00591 * 179.97438 * 7 6 4 34 34 H 1.09003 * 109.47057 * 150.00441 * 12 3 2 35 35 H 1.09002 * 109.47448 * 30.00698 * 12 3 2 36 36 H 1.08997 * 109.46975 * 60.00604 * 13 12 3 37 37 H 1.08996 * 109.46885 * 300.00064 * 13 12 3 38 38 H 1.09003 * 109.47320 * 60.00475 * 14 13 12 39 39 H 1.08996 * 109.47562 * 299.99696 * 14 13 12 40 40 H 0.97007 * 119.99635 * 0.02562 * 15 14 13 41 41 H 1.09007 * 109.47164 * 60.00106 * 18 16 15 42 42 H 1.09002 * 109.47109 * 300.00763 * 18 16 15 43 43 H 1.07992 * 120.02810 * 359.97438 * 21 20 19 44 44 H 1.08010 * 119.96945 * 179.72732 * 22 21 20 45 45 H 1.09005 * 109.46957 * 270.25951 * 24 23 22 46 46 H 1.09006 * 109.46800 * 30.25327 * 24 23 22 47 47 H 1.08996 * 109.47369 * 150.25146 * 24 23 22 48 48 H 1.09003 * 109.47038 * 270.02080 * 26 25 23 49 49 H 1.08993 * 109.47471 * 30.01873 * 26 25 23 50 50 H 1.08998 * 109.47273 * 150.01897 * 26 25 23 51 51 H 1.08003 * 120.02477 * 179.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3579 1.9874 -1.1801 5 1 2.8472 2.9501 -1.1713 6 6 2.0733 1.3643 -2.3874 7 7 1.0961 0.4857 -2.4603 8 14 3.0773 1.7729 -3.9087 9 1 4.3049 0.9376 -3.9308 10 1 2.2692 1.4974 -5.1238 11 1 3.4559 3.2085 -3.8811 12 6 2.1435 2.1139 1.2624 13 6 0.8338 2.8475 1.5582 14 6 0.9643 3.6122 2.8770 15 7 -0.2899 4.3141 3.1606 16 6 -0.4079 5.0584 4.2779 17 8 0.5245 5.1475 5.0485 18 6 -1.6979 5.7809 4.5694 19 8 -1.5758 6.4960 5.8006 20 6 -2.6592 7.2058 6.2119 21 6 -3.8161 7.2144 5.4459 22 6 -4.9139 7.9411 5.8634 23 6 -4.8644 8.6515 7.0489 24 6 -6.0656 9.4390 7.5048 25 6 -3.7129 8.6446 7.8138 26 6 -3.6601 9.4248 9.1020 27 6 -2.6101 7.9234 7.3979 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8901 33 1 0.8969 0.0506 -3.3039 34 1 2.9552 2.8371 1.1838 35 1 2.3579 1.4133 2.0695 36 1 0.0220 2.1243 1.6368 37 1 0.6195 3.5481 0.7512 38 1 1.7761 4.3353 2.7989 39 1 1.1783 2.9113 3.6838 40 1 -1.0355 4.2431 2.5441 41 1 -2.5097 5.0577 4.6479 42 1 -1.9123 6.4815 3.7624 43 1 -3.8565 6.6571 4.5217 44 1 -5.8132 7.9517 5.2653 45 1 -6.0105 10.4509 7.1030 46 1 -6.9744 8.9551 7.1470 47 1 -6.0808 9.4807 8.5938 48 1 -3.3029 10.4348 8.9007 49 1 -4.6575 9.4726 9.5390 50 1 -2.9818 8.9315 9.7981 51 1 -1.7107 7.9187 7.9957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752231053.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:39 Heat of formation + Delta-G solvation = -49.523365 kcal Electronic energy + Delta-G solvation = -27524.224253 eV Core-core repulsion = 23616.882030 eV Total energy + Delta-G solvation = -3907.342223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.50571 -40.55318 -38.83668 -38.23977 -36.31012 -33.85223 -33.61017 -32.98285 -32.24352 -30.91311 -29.75128 -28.10295 -26.91526 -26.57705 -24.96450 -23.22955 -22.66844 -22.22906 -21.82272 -21.11901 -19.05308 -18.70903 -18.19043 -17.51103 -17.22365 -16.90427 -16.52207 -16.41570 -16.13408 -15.61675 -15.44145 -15.09422 -15.03273 -14.80628 -14.67227 -14.32458 -14.29416 -13.77114 -13.68871 -13.56397 -13.34518 -13.18181 -13.12150 -12.92818 -12.89520 -12.76306 -12.60199 -12.54696 -12.14363 -12.10613 -12.09239 -11.76364 -11.73909 -11.65683 -11.35312 -11.16293 -11.03051 -10.32265 -10.18470 -9.75541 -9.00559 -8.81064 -7.78124 -5.09021 0.35065 0.43607 1.44042 1.48738 1.51179 1.54195 1.58531 2.55596 2.65114 2.73963 3.31164 3.54459 3.66162 3.85893 3.89464 3.98949 4.04770 4.10866 4.13668 4.25549 4.28693 4.34634 4.41840 4.47795 4.66159 4.74182 4.78482 4.80048 4.82128 4.84227 4.91338 4.95439 5.02724 5.06660 5.19759 5.22066 5.22392 5.27260 5.34858 5.36218 5.38129 5.44001 5.55914 5.65622 5.73212 5.84352 5.86399 6.20511 6.32406 6.39671 6.48464 7.10248 7.25378 7.97301 8.37101 9.23641 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.023273 B = 0.001608 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.844691 B =17409.701374 C =17684.366432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 N -0.612 5.612 4 C -0.255 4.255 5 H 0.071 0.929 6 C -0.050 4.050 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.293 1.293 10 H -0.299 1.299 11 H -0.277 1.277 12 C 0.150 3.850 13 C -0.133 4.133 14 C 0.132 3.868 15 N -0.710 5.710 16 C 0.511 3.489 17 O -0.574 6.574 18 C 0.044 3.956 19 O -0.321 6.321 20 C 0.105 3.895 21 C -0.216 4.216 22 C -0.082 4.082 23 C -0.134 4.134 24 C -0.111 4.111 25 C -0.056 4.056 26 C -0.118 4.118 27 C -0.170 4.170 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.021 0.979 33 H 0.245 0.755 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.417 0.583 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.068 0.932 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.310 15.759 19.381 29.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.041 3.959 3 N -0.333 5.333 4 C -0.385 4.385 5 H 0.089 0.911 6 C -0.245 4.245 7 N -0.562 5.562 8 Si 0.781 3.219 9 H -0.221 1.221 10 H -0.226 1.226 11 H -0.202 1.202 12 C 0.023 3.977 13 C -0.173 4.173 14 C 0.008 3.992 15 N -0.363 5.363 16 C 0.297 3.703 17 O -0.453 6.453 18 C -0.034 4.034 19 O -0.235 6.235 20 C 0.060 3.940 21 C -0.234 4.234 22 C -0.100 4.100 23 C -0.134 4.134 24 C -0.167 4.167 25 C -0.056 4.056 26 C -0.174 4.174 27 C -0.189 4.189 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.254 0.746 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.167 0.833 44 H 0.166 0.834 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.097 0.903 48 H 0.100 0.900 49 H 0.107 0.893 50 H 0.087 0.913 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.473 15.706 19.877 29.685 hybrid contribution 0.354 -0.248 -1.660 1.716 sum -15.119 15.458 18.216 28.273 Atomic orbital electron populations 1.22188 0.98367 0.98679 1.00264 1.20708 0.93276 0.84500 0.97460 1.44391 1.76089 1.10615 1.02241 1.19496 1.30747 1.03525 0.84698 0.91112 1.25297 0.98914 1.00773 0.99478 1.70292 1.28159 1.32925 1.24819 0.85518 0.78720 0.77661 0.79982 1.22053 1.22570 1.20196 1.20831 0.94915 0.94535 0.87445 1.22359 1.01184 0.99149 0.94614 1.21271 0.85592 0.95126 0.97215 1.45832 1.17730 1.49237 1.23522 1.20589 0.89361 0.79211 0.81144 1.90727 1.42265 1.63561 1.48796 1.22606 0.96002 0.97467 0.87295 1.86098 1.36497 1.61512 1.39344 1.19250 0.86485 0.93311 0.94912 1.21499 0.93506 1.05952 1.02473 1.21174 0.98324 0.94773 0.95690 1.20078 0.96524 1.01035 0.95765 1.20842 0.94167 0.99335 1.02358 1.19858 0.92034 0.96265 0.97465 1.20941 1.04079 0.99571 0.92776 1.20474 1.00424 1.01543 0.96427 0.92283 0.95177 0.94936 0.92737 0.96059 0.94537 0.93497 0.92632 0.91602 0.92719 0.92299 0.91772 0.74565 0.86029 0.86186 0.83348 0.83373 0.90632 0.90748 0.90333 0.90036 0.89286 0.91279 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.87 9.58 71.98 0.69 -5.18 16 2 C 0.17 7.69 5.64 86.38 0.49 8.18 16 3 N -0.61 -28.68 2.54 -701.98 -1.78 -30.46 16 4 C -0.25 -13.31 9.70 84.03 0.82 -12.49 16 5 H 0.07 3.65 7.93 -2.91 -0.02 3.62 16 6 C -0.05 -2.65 4.91 84.86 0.42 -2.23 16 7 N -0.91 -50.34 8.54 21.65 0.18 -50.15 16 8 Si 0.95 43.90 29.62 68.60 2.03 45.93 16 9 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 10 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 12 C 0.15 5.59 5.71 86.38 0.49 6.08 16 13 C -0.13 -4.19 5.53 30.60 0.17 -4.02 16 14 C 0.13 3.64 5.67 86.38 0.49 4.13 16 15 N -0.71 -16.26 5.56 -463.06 -2.57 -18.83 16 16 C 0.51 13.38 7.91 87.66 0.69 14.08 16 17 O -0.57 -21.03 16.50 15.98 0.26 -20.77 16 18 C 0.04 0.82 5.22 71.24 0.37 1.19 16 19 O -0.32 -8.26 9.67 -73.36 -0.71 -8.97 16 20 C 0.11 2.31 6.69 22.51 0.15 2.46 16 21 C -0.22 -3.57 9.04 22.36 0.20 -3.37 16 22 C -0.08 -1.16 9.69 22.25 0.22 -0.94 16 23 C -0.13 -1.92 5.88 -19.85 -0.12 -2.03 16 24 C -0.11 -0.91 9.60 71.23 0.68 -0.23 16 25 C -0.06 -0.92 5.88 -19.88 -0.12 -1.04 16 26 C -0.12 -1.25 9.60 71.24 0.68 -0.56 16 27 C -0.17 -3.59 9.64 22.37 0.22 -3.38 16 28 H 0.06 2.96 6.28 -2.38 -0.01 2.94 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.03 1.24 5.98 -2.39 -0.01 1.23 16 31 H 0.05 2.89 5.87 -2.39 -0.01 2.88 16 32 H 0.02 0.89 7.98 -2.38 -0.02 0.87 16 33 H 0.24 13.32 8.31 -92.71 -0.77 12.55 16 34 H 0.05 1.74 8.03 -2.39 -0.02 1.72 16 35 H 0.06 1.90 7.95 -2.39 -0.02 1.88 16 36 H 0.07 2.11 5.93 -2.39 -0.01 2.09 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.42 7.06 8.47 -92.70 -0.79 6.27 16 41 H 0.12 1.53 7.66 -2.38 -0.02 1.51 16 42 H 0.12 1.55 7.66 -2.39 -0.02 1.53 16 43 H 0.15 1.69 6.30 -2.91 -0.02 1.67 16 44 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 45 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 46 H 0.07 0.47 8.09 -2.38 -0.02 0.45 16 47 H 0.08 0.50 5.94 -2.39 -0.01 0.48 16 48 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.09 0.64 5.94 -2.39 -0.01 0.62 16 50 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 51 H 0.12 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -69.79 407.01 4.10 -65.69 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.14 Total: 16.91 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 6.54 Total: 0.64 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -4.17 Total: -99.44 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.45 Total: -29.73 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -69.79 4.10 -65.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752231053.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.164 kcal (2) G-P(sol) polarization free energy of solvation -69.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds