Wall clock time and date at job start Tue Mar 31 2020 18:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46834 * 2 1 4 4 C 1.36938 * 120.00101 * 275.30328 * 3 2 1 5 5 H 1.07998 * 119.99696 * 37.58171 * 4 3 2 6 6 C 1.38807 * 119.99797 * 217.58355 * 4 3 2 7 7 N 1.31610 * 120.00637 * 21.42816 * 6 4 3 8 8 Si 1.86807 * 119.99660 * 201.42474 * 6 4 3 9 9 H 1.48497 * 109.46839 * 90.00223 * 8 6 4 10 10 H 1.48499 * 109.47146 * 210.00252 * 8 6 4 11 11 H 1.48503 * 109.47021 * 330.00465 * 8 6 4 12 12 C 1.46502 * 119.99813 * 95.31431 * 3 2 1 13 13 C 1.53001 * 109.46649 * 269.99326 * 12 3 2 14 14 C 1.53003 * 109.46890 * 180.02562 * 13 12 3 15 15 N 1.46506 * 109.47010 * 179.97438 * 14 13 12 16 16 C 1.34774 * 120.00129 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99973 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00163 * 180.02562 * 16 15 14 19 19 O 1.42901 * 109.47345 * 180.02562 * 18 16 15 20 20 C 1.35895 * 116.99963 * 180.02562 * 19 18 16 21 21 C 1.38736 * 120.05879 * 359.72232 * 20 19 18 22 22 C 1.38146 * 119.94376 * 179.76928 * 21 20 19 23 23 C 1.50698 * 119.96869 * 180.25516 * 22 21 20 24 24 C 1.38272 * 120.05401 * 0.50820 * 22 21 20 25 25 C 1.38266 * 120.11238 * 359.74288 * 24 22 21 26 26 C 1.50698 * 119.97176 * 180.02562 * 25 24 22 27 27 C 1.38144 * 120.05564 * 0.02562 * 25 24 22 28 28 H 1.08991 * 109.47241 * 299.99995 * 1 2 3 29 29 H 1.09006 * 109.46630 * 60.00336 * 1 2 3 30 30 H 1.09001 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46736 * 239.99577 * 2 1 3 32 32 H 1.08999 * 109.46432 * 119.99978 * 2 1 3 33 33 H 0.97000 * 120.00486 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47127 * 149.99534 * 12 3 2 35 35 H 1.08996 * 109.47243 * 29.99120 * 12 3 2 36 36 H 1.08995 * 109.47472 * 60.00020 * 13 12 3 37 37 H 1.09001 * 109.47081 * 300.00324 * 13 12 3 38 38 H 1.08997 * 109.47528 * 60.00354 * 14 13 12 39 39 H 1.08996 * 109.46913 * 299.99739 * 14 13 12 40 40 H 0.97001 * 119.99621 * 0.02562 * 15 14 13 41 41 H 1.09002 * 109.47073 * 60.00160 * 18 16 15 42 42 H 1.09001 * 109.47040 * 300.00335 * 18 16 15 43 43 H 1.07997 * 120.02151 * 0.02562 * 21 20 19 44 44 H 1.08997 * 109.46641 * 270.24872 * 23 22 21 45 45 H 1.08992 * 109.47328 * 30.25371 * 23 22 21 46 46 H 1.09005 * 109.46752 * 150.25588 * 23 22 21 47 47 H 1.07995 * 119.94073 * 179.72220 * 24 22 21 48 48 H 1.08997 * 109.47229 * 269.98257 * 26 25 24 49 49 H 1.09000 * 109.46781 * 29.98144 * 26 25 24 50 50 H 1.08994 * 109.47022 * 149.98054 * 26 25 24 51 51 H 1.07999 * 120.02456 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2112 2.9288 -1.3727 7 7 4.3027 2.7980 -0.6490 8 14 3.0995 4.2794 -2.6585 9 1 2.5377 5.5068 -2.0395 10 1 4.4551 4.5694 -3.1908 11 1 2.2168 3.8356 -3.7671 12 6 2.3732 2.0326 1.2633 13 6 1.1426 2.7382 1.8365 14 6 1.5133 3.4191 3.1556 15 7 0.3351 4.0952 3.7042 16 6 0.4248 4.7663 4.8695 17 8 1.4809 4.8101 5.4643 18 6 -0.7873 5.4613 5.4341 19 8 -0.4410 6.0974 6.6660 20 6 -1.4284 6.7733 7.3102 21 6 -2.7030 6.8282 6.7649 22 6 -3.7061 7.5119 7.4242 23 6 -5.0922 7.5671 6.8353 24 6 -3.4382 8.1501 8.6212 25 6 -2.1675 8.1012 9.1641 26 6 -1.8791 8.7973 10.4692 27 6 -1.1621 7.4148 8.5112 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.0492 3.4026 -0.7834 34 1 3.1617 2.7641 1.0860 35 1 2.7254 1.2833 1.9721 36 1 0.3541 2.0069 2.0138 37 1 0.7903 3.4875 1.1276 38 1 2.3016 4.1506 2.9779 39 1 1.8658 2.6700 3.8646 40 1 -0.5098 4.0593 3.2290 41 1 -1.5758 4.7299 5.6115 42 1 -1.1396 6.2106 4.7252 43 1 -2.9116 6.3333 5.8280 44 1 -5.1748 8.4352 6.1814 45 1 -5.2791 6.6601 6.2605 46 1 -5.8252 7.6460 7.6383 47 1 -4.2226 8.6878 9.1328 48 1 -1.5578 9.8201 10.2722 49 1 -2.7813 8.8113 11.0806 50 1 -1.0896 8.2641 10.9987 51 1 -0.1696 7.3773 8.9354 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752232000.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:43 Heat of formation + Delta-G solvation = -47.707617 kcal Electronic energy + Delta-G solvation = -27706.290262 eV Core-core repulsion = 23799.026776 eV Total energy + Delta-G solvation = -3907.263486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.67369 -39.48515 -37.86186 -36.44366 -34.82085 -33.89526 -31.89038 -31.73294 -31.19892 -29.11525 -28.20962 -27.55995 -26.91335 -25.08543 -23.57410 -22.10373 -21.35366 -21.09025 -20.46736 -19.92801 -17.99193 -17.26539 -16.72988 -16.59409 -16.35601 -15.93312 -15.44293 -15.22585 -14.81226 -14.32561 -14.17229 -14.00767 -13.91980 -13.57598 -13.54178 -13.36659 -13.34780 -12.97249 -12.81990 -12.64233 -12.38885 -12.17788 -12.14831 -11.77578 -11.61948 -11.46483 -11.22037 -11.16817 -11.05981 -11.00230 -10.78498 -10.60567 -10.47537 -10.07555 -9.83295 -9.65069 -9.56495 -8.94946 -8.94024 -8.49254 -8.43340 -6.58687 -5.80230 -3.39828 0.99675 1.15255 2.44406 2.56407 3.33773 3.40746 3.42091 3.42809 3.58404 4.34583 4.42513 4.45616 4.58505 4.67876 4.78716 4.80188 4.89653 5.00490 5.00874 5.21297 5.22071 5.25165 5.28109 5.35544 5.37926 5.50671 5.58676 5.61629 5.79532 5.83424 5.95104 6.01385 6.05260 6.18542 6.23340 6.30395 6.32690 6.39396 6.41690 6.47502 6.55750 6.70992 6.73275 6.89281 7.06036 7.11118 7.15215 7.52070 7.65665 7.80888 8.20281 8.50768 9.17985 9.80202 10.39091 11.19211 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.001864 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.612414 B =15019.025474 C =15219.476823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.151 3.849 13 C -0.147 4.147 14 C 0.122 3.878 15 N -0.721 5.721 16 C 0.510 3.490 17 O -0.520 6.520 18 C 0.041 3.959 19 O -0.288 6.288 20 C 0.139 3.861 21 C -0.218 4.218 22 C -0.043 4.043 23 C -0.116 4.116 24 C -0.162 4.162 25 C -0.044 4.044 26 C -0.115 4.115 27 C -0.156 4.156 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.033 0.967 33 H 0.255 0.745 34 H 0.095 0.905 35 H 0.025 0.975 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.400 0.600 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.122 0.878 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.069 0.931 51 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.992 8.913 17.797 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.203 1.203 12 C 0.023 3.977 13 C -0.187 4.187 14 C -0.001 4.001 15 N -0.374 5.374 16 C 0.294 3.706 17 O -0.395 6.395 18 C -0.038 4.038 19 O -0.200 6.200 20 C 0.094 3.906 21 C -0.237 4.237 22 C -0.044 4.044 23 C -0.173 4.173 24 C -0.180 4.180 25 C -0.044 4.044 26 C -0.171 4.171 27 C -0.175 4.175 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.234 0.766 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.146 0.854 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.140 0.860 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.088 0.912 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.800 8.965 18.253 26.378 hybrid contribution -0.715 0.707 -1.133 1.515 sum -17.515 9.672 17.120 26.332 Atomic orbital electron populations 1.22369 1.00186 0.98892 1.01066 1.20852 0.91661 0.87403 0.98756 1.43741 1.76042 1.08174 1.02475 1.18988 1.04681 1.21237 0.94178 0.92290 1.25198 0.94215 1.01307 0.98076 1.69991 1.03178 1.37211 1.42389 0.86410 0.76979 0.82611 0.81483 1.21319 1.21713 1.20284 1.20798 0.94391 0.96690 0.85801 1.22554 1.02494 0.99889 0.93760 1.21540 0.86720 0.96147 0.95697 1.46029 1.14972 1.53691 1.22696 1.19966 0.89370 0.79663 0.81617 1.90758 1.29750 1.59848 1.59129 1.22517 0.97155 0.97807 0.86295 1.86174 1.34617 1.64596 1.34594 1.19023 0.87104 0.92197 0.92306 1.21118 0.92759 1.07189 1.02632 1.19679 0.95405 0.95117 0.94163 1.20824 0.92661 1.02711 1.01091 1.20805 0.96684 1.03520 0.96981 1.19681 0.92738 0.95853 0.96152 1.20811 1.02551 1.00283 0.93499 1.20295 1.00518 1.01950 0.94729 0.93832 0.93277 0.94632 0.93868 0.94820 0.93462 0.88708 0.95609 0.92976 0.91644 0.91279 0.91753 0.76640 0.89033 0.88993 0.85433 0.90863 0.91385 0.91317 0.86007 0.90815 0.91304 0.91196 0.85053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.21 37.16 0.38 -2.50 16 2 C 0.14 2.88 6.44 -4.04 -0.03 2.85 16 3 N -0.58 -13.96 2.43 -173.24 -0.42 -14.38 16 4 C -0.26 -6.90 9.45 -15.06 -0.14 -7.05 16 5 H 0.06 1.57 7.92 -52.49 -0.42 1.15 16 6 C 0.01 0.34 4.95 -17.44 -0.09 0.26 16 7 N -0.89 -25.08 11.47 55.49 0.64 -24.45 16 8 Si 0.90 21.16 29.60 -169.99 -5.03 16.13 16 9 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.15 3.34 5.33 -4.04 -0.02 3.32 16 13 C -0.15 -2.61 5.65 -26.73 -0.15 -2.76 16 14 C 0.12 1.99 5.68 -4.04 -0.02 1.96 16 15 N -0.72 -9.54 5.56 -60.29 -0.33 -9.88 16 16 C 0.51 7.41 7.91 -10.99 -0.09 7.32 16 17 O -0.52 -10.06 16.50 -14.36 -0.24 -10.30 16 18 C 0.04 0.44 5.22 36.00 0.19 0.63 16 19 O -0.29 -3.89 9.67 -39.32 -0.38 -4.27 16 20 C 0.14 1.63 6.69 -39.21 -0.26 1.36 16 21 C -0.22 -2.10 8.69 -39.43 -0.34 -2.44 16 22 C -0.04 -0.37 5.88 -104.64 -0.62 -0.99 16 23 C -0.12 -0.69 10.01 36.00 0.36 -0.33 16 24 C -0.16 -1.36 9.35 -39.56 -0.37 -1.73 16 25 C -0.04 -0.39 5.88 -104.65 -0.62 -1.01 16 26 C -0.11 -0.71 10.01 36.00 0.36 -0.35 16 27 C -0.16 -1.69 9.64 -39.43 -0.38 -2.07 16 28 H 0.04 0.72 6.64 -51.93 -0.34 0.38 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.10 2.42 5.52 -51.93 -0.29 2.14 16 35 H 0.03 0.55 7.86 -51.93 -0.41 0.14 16 36 H 0.05 0.86 6.64 -51.93 -0.34 0.52 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.40 4.03 8.47 -40.82 -0.35 3.68 16 41 H 0.09 0.73 7.67 -51.93 -0.40 0.33 16 42 H 0.09 0.77 7.65 -51.93 -0.40 0.37 16 43 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 46 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 47 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 50 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 51 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 417.89 15.07 6.30 6.30 Total: -1.00 -32.65 417.89 -10.02 -42.67 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -8.72 Total: 1.69 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -1.83 Total: -3.52 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.12 Total: -48.71 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.62 Total: -14.57 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.65 -10.02 -42.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752232000.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.035 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds