Wall clock time and date at job start Tue Mar 31 2020 18:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.46834 * 2 1 4 4 C 1.36938 * 120.00101 * 275.30328 * 3 2 1 5 5 H 1.07998 * 119.99696 * 37.58171 * 4 3 2 6 6 C 1.38807 * 119.99797 * 217.58355 * 4 3 2 7 7 N 1.31610 * 120.00637 * 21.42816 * 6 4 3 8 8 Si 1.86807 * 119.99660 * 201.42474 * 6 4 3 9 9 H 1.48497 * 109.46839 * 90.00223 * 8 6 4 10 10 H 1.48499 * 109.47146 * 210.00252 * 8 6 4 11 11 H 1.48503 * 109.47021 * 330.00465 * 8 6 4 12 12 C 1.46502 * 119.99813 * 95.31431 * 3 2 1 13 13 C 1.53001 * 109.46649 * 269.99326 * 12 3 2 14 14 C 1.53003 * 109.46890 * 180.02562 * 13 12 3 15 15 N 1.46506 * 109.47010 * 179.97438 * 14 13 12 16 16 C 1.34774 * 120.00129 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99973 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00163 * 180.02562 * 16 15 14 19 19 O 1.42901 * 109.47345 * 180.02562 * 18 16 15 20 20 C 1.35895 * 116.99963 * 180.02562 * 19 18 16 21 21 C 1.38736 * 120.05879 * 359.72232 * 20 19 18 22 22 C 1.38146 * 119.94376 * 179.76928 * 21 20 19 23 23 C 1.50698 * 119.96869 * 180.25516 * 22 21 20 24 24 C 1.38272 * 120.05401 * 0.50820 * 22 21 20 25 25 C 1.38266 * 120.11238 * 359.74288 * 24 22 21 26 26 C 1.50698 * 119.97176 * 180.02562 * 25 24 22 27 27 C 1.38144 * 120.05564 * 0.02562 * 25 24 22 28 28 H 1.08991 * 109.47241 * 299.99995 * 1 2 3 29 29 H 1.09006 * 109.46630 * 60.00336 * 1 2 3 30 30 H 1.09001 * 109.47165 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46736 * 239.99577 * 2 1 3 32 32 H 1.08999 * 109.46432 * 119.99978 * 2 1 3 33 33 H 0.97000 * 120.00486 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47127 * 149.99534 * 12 3 2 35 35 H 1.08996 * 109.47243 * 29.99120 * 12 3 2 36 36 H 1.08995 * 109.47472 * 60.00020 * 13 12 3 37 37 H 1.09001 * 109.47081 * 300.00324 * 13 12 3 38 38 H 1.08997 * 109.47528 * 60.00354 * 14 13 12 39 39 H 1.08996 * 109.46913 * 299.99739 * 14 13 12 40 40 H 0.97001 * 119.99621 * 0.02562 * 15 14 13 41 41 H 1.09002 * 109.47073 * 60.00160 * 18 16 15 42 42 H 1.09001 * 109.47040 * 300.00335 * 18 16 15 43 43 H 1.07997 * 120.02151 * 0.02562 * 21 20 19 44 44 H 1.08997 * 109.46641 * 270.24872 * 23 22 21 45 45 H 1.08992 * 109.47328 * 30.25371 * 23 22 21 46 46 H 1.09005 * 109.46752 * 150.25588 * 23 22 21 47 47 H 1.07995 * 119.94073 * 179.72220 * 24 22 21 48 48 H 1.08997 * 109.47229 * 269.98257 * 26 25 24 49 49 H 1.09000 * 109.46781 * 29.98144 * 26 25 24 50 50 H 1.08994 * 109.47022 * 149.98054 * 26 25 24 51 51 H 1.07999 * 120.02456 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2112 2.9288 -1.3727 7 7 4.3027 2.7980 -0.6490 8 14 3.0995 4.2794 -2.6585 9 1 2.5377 5.5068 -2.0395 10 1 4.4551 4.5694 -3.1908 11 1 2.2168 3.8356 -3.7671 12 6 2.3732 2.0326 1.2633 13 6 1.1426 2.7382 1.8365 14 6 1.5133 3.4191 3.1556 15 7 0.3351 4.0952 3.7042 16 6 0.4248 4.7663 4.8695 17 8 1.4809 4.8101 5.4643 18 6 -0.7873 5.4613 5.4341 19 8 -0.4410 6.0974 6.6660 20 6 -1.4284 6.7733 7.3102 21 6 -2.7030 6.8282 6.7649 22 6 -3.7061 7.5119 7.4242 23 6 -5.0922 7.5671 6.8353 24 6 -3.4382 8.1501 8.6212 25 6 -2.1675 8.1012 9.1641 26 6 -1.8791 8.7973 10.4692 27 6 -1.1621 7.4148 8.5112 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.0492 3.4026 -0.7834 34 1 3.1617 2.7641 1.0860 35 1 2.7254 1.2833 1.9721 36 1 0.3541 2.0069 2.0138 37 1 0.7903 3.4875 1.1276 38 1 2.3016 4.1506 2.9779 39 1 1.8658 2.6700 3.8646 40 1 -0.5098 4.0593 3.2290 41 1 -1.5758 4.7299 5.6115 42 1 -1.1396 6.2106 4.7252 43 1 -2.9116 6.3333 5.8280 44 1 -5.1748 8.4352 6.1814 45 1 -5.2791 6.6601 6.2605 46 1 -5.8252 7.6460 7.6383 47 1 -4.2226 8.6878 9.1328 48 1 -1.5578 9.8201 10.2722 49 1 -2.7813 8.8113 11.0806 50 1 -1.0896 8.2641 10.9987 51 1 -0.1696 7.3773 8.9354 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752232000.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:42 Heat of formation + Delta-G solvation = -65.673777 kcal Electronic energy + Delta-G solvation = -27707.069333 eV Core-core repulsion = 23799.026776 eV Total energy + Delta-G solvation = -3908.042557 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.52356 -40.54237 -38.71567 -38.13641 -36.23055 -34.47128 -33.81678 -33.01774 -32.06089 -30.48223 -29.44667 -28.09474 -27.64795 -26.75927 -25.14993 -22.90748 -22.55376 -22.24450 -21.91007 -21.16558 -18.84652 -18.59578 -18.23304 -17.54136 -17.19712 -16.97462 -16.77853 -16.49156 -16.32670 -15.66758 -15.50805 -15.02598 -14.83950 -14.71090 -14.60807 -14.24128 -14.10442 -14.05450 -13.98307 -13.69599 -13.31352 -13.26624 -13.19176 -12.92054 -12.74186 -12.71806 -12.66512 -12.57781 -12.36280 -12.32167 -12.13238 -11.93040 -11.84886 -11.69729 -11.45901 -11.24632 -11.02186 -10.49659 -10.20872 -9.59883 -9.16438 -8.54447 -7.80397 -5.44831 0.32705 0.44527 1.42949 1.44922 1.48043 1.50108 1.55994 2.50390 2.62659 2.72760 3.24431 3.52498 3.66924 3.79925 3.87599 3.95916 4.03956 4.14656 4.16443 4.28413 4.32901 4.39274 4.45895 4.47542 4.54172 4.67333 4.73567 4.77549 4.80956 4.82652 4.86419 4.89800 4.96014 4.98966 5.05027 5.11656 5.17323 5.29734 5.33787 5.35223 5.35748 5.46684 5.54816 5.61758 5.66280 5.70602 5.83763 5.85273 6.31954 6.48467 6.48782 7.10998 7.19484 7.89447 8.41833 9.14078 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.015981 B = 0.001864 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.612414 B =15019.025474 C =15219.476823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.261 4.261 5 H 0.057 0.943 6 C -0.038 4.038 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.285 1.285 10 H -0.298 1.298 11 H -0.267 1.267 12 C 0.149 3.851 13 C -0.122 4.122 14 C 0.134 3.866 15 N -0.706 5.706 16 C 0.508 3.492 17 O -0.577 6.577 18 C 0.047 3.953 19 O -0.322 6.322 20 C 0.116 3.884 21 C -0.223 4.223 22 C -0.048 4.048 23 C -0.115 4.115 24 C -0.166 4.166 25 C -0.049 4.049 26 C -0.114 4.114 27 C -0.183 4.183 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.250 0.750 34 H 0.059 0.941 35 H 0.027 0.973 36 H 0.074 0.926 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.061 0.939 40 H 0.419 0.581 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.148 0.852 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.145 0.855 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.069 0.931 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.748 9.352 18.085 29.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.322 5.322 4 C -0.392 4.392 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.211 1.211 10 H -0.225 1.225 11 H -0.192 1.192 12 C 0.022 3.978 13 C -0.162 4.162 14 C 0.009 3.991 15 N -0.360 5.360 16 C 0.294 3.706 17 O -0.456 6.456 18 C -0.031 4.031 19 O -0.235 6.235 20 C 0.071 3.929 21 C -0.242 4.242 22 C -0.048 4.048 23 C -0.171 4.171 24 C -0.184 4.184 25 C -0.049 4.049 26 C -0.171 4.171 27 C -0.201 4.201 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.257 0.743 41 H 0.143 0.857 42 H 0.139 0.861 43 H 0.166 0.834 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.163 0.837 48 H 0.100 0.900 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.630 9.389 18.525 29.273 hybrid contribution 0.431 0.512 -1.175 1.352 sum -20.198 9.901 17.350 28.409 Atomic orbital electron populations 1.22164 0.97096 1.00787 1.00931 1.21009 0.93975 0.85680 0.98582 1.43983 1.76447 1.09549 1.02237 1.19191 1.04035 1.21105 0.94874 0.92580 1.25867 0.94043 1.03418 1.00183 1.70128 1.03806 1.38059 1.44285 0.85477 0.76512 0.80121 0.79617 1.21129 1.22451 1.19207 1.20704 0.95370 0.96123 0.85594 1.22169 1.00728 0.99632 0.93670 1.21175 0.87315 0.95511 0.95087 1.45767 1.14829 1.52857 1.22510 1.20685 0.89885 0.78908 0.81097 1.90736 1.32223 1.61892 1.60710 1.22600 0.95364 0.98984 0.86167 1.86112 1.36238 1.65447 1.35696 1.19255 0.87708 0.93077 0.92829 1.21362 0.92000 1.07412 1.03423 1.20085 0.96484 0.94192 0.94083 1.20880 0.91096 1.03485 1.01647 1.21167 0.96899 1.03225 0.97094 1.20001 0.92642 0.95319 0.96918 1.20867 1.03423 1.00305 0.92457 1.20474 1.00877 1.03374 0.95418 0.92829 0.94449 0.91722 0.95361 0.93755 0.94065 0.92349 0.95449 0.90755 0.92652 0.93818 0.92074 0.74331 0.85653 0.86147 0.83437 0.90047 0.90556 0.90084 0.83720 0.90047 0.89597 0.91243 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.83 10.21 71.98 0.73 -4.09 16 2 C 0.13 5.33 6.44 86.38 0.56 5.88 16 3 N -0.60 -28.64 2.43 -702.01 -1.71 -30.35 16 4 C -0.26 -13.86 9.45 84.03 0.79 -13.07 16 5 H 0.06 2.96 7.92 -2.91 -0.02 2.94 16 6 C -0.04 -2.06 4.95 84.86 0.42 -1.64 16 7 N -0.92 -53.54 11.47 21.65 0.25 -53.29 16 8 Si 0.95 43.97 29.60 68.60 2.03 46.00 16 9 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 10 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 C 0.15 6.67 5.33 86.38 0.46 7.13 16 13 C -0.12 -4.22 5.65 30.60 0.17 -4.05 16 14 C 0.13 4.34 5.68 86.38 0.49 4.83 16 15 N -0.71 -17.73 5.56 -463.06 -2.57 -20.30 16 16 C 0.51 14.47 7.91 87.66 0.69 15.17 16 17 O -0.58 -23.00 16.50 16.00 0.26 -22.73 16 18 C 0.05 0.92 5.22 71.23 0.37 1.29 16 19 O -0.32 -8.71 9.67 -73.33 -0.71 -9.42 16 20 C 0.12 2.67 6.69 22.51 0.15 2.82 16 21 C -0.22 -3.86 8.69 22.37 0.19 -3.66 16 22 C -0.05 -0.71 5.88 -19.88 -0.12 -0.83 16 23 C -0.11 -0.97 10.01 71.24 0.71 -0.26 16 24 C -0.17 -2.43 9.35 22.28 0.21 -2.22 16 25 C -0.05 -0.83 5.88 -19.88 -0.12 -0.94 16 26 C -0.11 -1.27 10.01 71.24 0.71 -0.56 16 27 C -0.18 -4.04 9.64 22.37 0.22 -3.83 16 28 H 0.05 1.60 6.64 -2.39 -0.02 1.59 16 29 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.03 1.19 8.08 -2.39 -0.02 1.17 16 32 H 0.04 1.66 7.83 -2.39 -0.02 1.64 16 33 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.06 3.10 5.52 -2.39 -0.01 3.08 16 35 H 0.03 1.18 7.86 -2.39 -0.02 1.16 16 36 H 0.07 2.26 6.64 -2.39 -0.02 2.25 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 40 H 0.42 7.28 8.47 -92.71 -0.79 6.49 16 41 H 0.13 1.61 7.67 -2.39 -0.02 1.59 16 42 H 0.12 1.68 7.65 -2.39 -0.02 1.66 16 43 H 0.15 1.78 6.30 -2.91 -0.02 1.76 16 44 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.08 0.54 8.09 -2.39 -0.02 0.52 16 46 H 0.08 0.50 8.09 -2.38 -0.02 0.48 16 47 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 48 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 50 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 51 H 0.12 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -73.74 417.89 4.33 -69.40 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: 0.12 Total: 18.71 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 6.66 Total: 1.98 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -4.03 Total: -103.94 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.45 Total: -32.15 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -73.74 4.33 -69.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752232000.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.728 kcal (2) G-P(sol) polarization free energy of solvation -73.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds