Wall clock time and date at job start Tue Mar 31 2020 18:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46624 * 2 1 4 4 C 1.36937 * 120.00360 * 275.30985 * 3 2 1 5 5 H 1.08005 * 119.99731 * 37.57107 * 4 3 2 6 6 C 1.38807 * 120.00228 * 217.58226 * 4 3 2 7 7 N 1.31623 * 120.00118 * 21.42737 * 6 4 3 8 8 Si 1.86801 * 120.00057 * 201.43162 * 6 4 3 9 9 H 1.48495 * 109.47043 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47359 * 119.99789 * 8 6 4 11 11 H 1.48497 * 109.47037 * 239.99612 * 8 6 4 12 12 C 1.46503 * 119.99915 * 95.30988 * 3 2 1 13 13 C 1.52995 * 109.47115 * 270.00030 * 12 3 2 14 14 N 1.46503 * 109.47115 * 179.97438 * 13 12 3 15 15 C 1.34775 * 119.99956 * 179.97438 * 14 13 12 16 16 O 1.21556 * 120.00303 * 359.97438 * 15 14 13 17 17 C 1.47853 * 119.99996 * 180.02562 * 15 14 13 18 18 C 1.39604 * 120.11958 * 359.97438 * 17 15 14 19 19 C 1.37965 * 119.96729 * 180.02562 * 18 17 15 20 20 C 1.38287 * 120.20957 * 359.72524 * 19 18 17 21 21 C 1.38815 * 120.23244 * 0.54662 * 20 19 18 22 22 O 1.35907 * 119.98129 * 179.72190 * 21 20 19 23 23 C 1.42905 * 117.00101 * 359.73176 * 22 21 20 24 24 C 1.52997 * 109.47103 * 179.97438 * 23 22 21 25 25 C 1.52995 * 109.47370 * 174.99916 * 24 23 22 26 26 C 1.53001 * 109.47524 * 295.00111 * 24 23 22 27 27 C 1.38492 * 120.03384 * 359.45606 * 21 20 19 28 28 H 1.08995 * 109.47281 * 299.99384 * 1 2 3 29 29 H 1.09002 * 109.47076 * 60.00228 * 1 2 3 30 30 H 1.09004 * 109.46295 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47673 * 240.00247 * 2 1 3 32 32 H 1.09002 * 109.47076 * 119.99772 * 2 1 3 33 33 H 0.97005 * 119.99981 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47318 * 150.00002 * 12 3 2 35 35 H 1.09003 * 109.47165 * 30.00173 * 12 3 2 36 36 H 1.08994 * 109.47567 * 60.00182 * 13 12 3 37 37 H 1.09007 * 109.47089 * 299.99618 * 13 12 3 38 38 H 0.96999 * 119.99726 * 359.97438 * 14 13 12 39 39 H 1.07999 * 120.01796 * 359.97438 * 18 17 15 40 40 H 1.07999 * 119.89587 * 180.02562 * 19 18 17 41 41 H 1.07988 * 119.88603 * 180.29489 * 20 19 18 42 42 H 1.08994 * 109.47115 * 59.99982 * 23 22 21 43 43 H 1.08998 * 109.47050 * 299.99888 * 23 22 21 44 44 H 1.09002 * 109.47504 * 55.00139 * 24 23 22 45 45 H 1.09000 * 109.47099 * 59.99900 * 25 24 23 46 46 H 1.09001 * 109.47951 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.47487 * 300.00268 * 25 24 23 48 48 H 1.09005 * 109.47189 * 59.99700 * 26 24 23 49 49 H 1.08999 * 109.47677 * 180.02562 * 26 24 23 50 50 H 1.08998 * 109.47205 * 299.99900 * 26 24 23 51 51 H 1.08001 * 120.10279 * 180.25136 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1430 2.0635 -1.1808 5 1 1.4104 1.9278 -1.9627 6 6 3.2110 2.9291 -1.3728 7 7 4.3025 2.7982 -0.6491 8 14 3.0990 4.2798 -2.6583 9 1 1.7773 4.2137 -3.3319 10 1 3.2546 5.6025 -2.0014 11 1 4.1763 4.0967 -3.6638 12 6 2.3731 2.0328 1.2633 13 6 1.1424 2.7382 1.8366 14 7 1.4971 3.3892 3.1002 15 6 0.5646 4.0765 3.7891 16 8 -0.5705 4.1567 3.3618 17 6 0.9227 4.7339 5.0641 18 6 2.2257 4.6440 5.5569 19 6 2.5562 5.2582 6.7472 20 6 1.6019 5.9685 7.4522 21 6 0.3022 6.0588 6.9729 22 8 -0.6331 6.7534 7.6727 23 6 -0.2103 7.3599 8.8957 24 6 -1.3908 8.0924 9.5364 25 6 -0.9724 8.6357 10.9041 26 6 -1.8204 9.2528 8.6365 27 6 -0.0404 5.4460 5.7791 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.0487 3.4034 -0.7830 34 1 3.1615 2.7643 1.0860 35 1 2.7254 1.2834 1.9722 36 1 0.3540 2.0068 2.0139 37 1 0.7901 3.4876 1.1277 38 1 2.4030 3.3255 3.4410 39 1 2.9745 4.0931 5.0071 40 1 3.5647 5.1882 7.1272 41 1 1.8675 6.4512 8.3809 42 1 0.5901 8.0709 8.6909 43 1 0.1529 6.5901 9.5765 44 1 -2.2241 7.4006 9.6598 45 1 -0.1392 9.3275 10.7809 46 1 -1.8135 9.1571 11.3609 47 1 -0.6664 7.8090 11.5453 48 1 -2.1185 8.8658 7.6621 49 1 -2.6611 9.7750 9.0932 50 1 -0.9872 9.9447 8.5132 51 1 -1.0502 5.5189 5.4031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753094230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:49 Heat of formation + Delta-G solvation = -45.320219 kcal Electronic energy + Delta-G solvation = -28147.754157 eV Core-core repulsion = 24240.594196 eV Total energy + Delta-G solvation = -3907.159961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.54622 -39.33831 -37.52657 -36.28653 -35.56124 -34.14103 -31.88677 -31.38998 -30.47454 -29.36238 -27.61243 -27.45034 -26.97693 -24.51130 -23.54977 -22.55938 -21.70679 -20.72744 -20.38175 -20.02873 -18.59044 -16.85350 -16.65190 -16.34840 -16.19079 -15.94236 -15.29420 -15.16210 -14.78084 -14.62177 -14.22874 -14.04624 -13.87165 -13.70894 -13.51767 -13.36410 -12.95100 -12.85264 -12.63483 -12.45132 -12.38781 -12.09606 -11.98775 -11.64846 -11.53645 -11.50342 -11.40263 -11.12861 -10.99695 -10.94100 -10.78160 -10.63682 -10.48862 -10.08952 -9.87042 -9.85899 -9.57924 -9.17433 -8.58271 -8.47410 -8.39542 -6.63135 -5.84213 -3.42806 0.75821 1.25481 2.81633 2.99561 3.34077 3.43524 3.47304 3.57944 3.86363 4.29918 4.36440 4.46212 4.59466 4.61301 4.66245 4.85051 4.96372 4.99865 5.02515 5.11000 5.22257 5.27726 5.28132 5.37561 5.41287 5.47977 5.54458 5.62029 5.75634 5.82720 5.91898 5.99521 6.05474 6.10654 6.16837 6.18798 6.24114 6.39051 6.40740 6.48037 6.51095 6.69247 6.85867 6.92097 7.01814 7.17234 7.18280 7.53086 7.80429 7.90282 8.47277 8.54443 9.14075 9.76004 10.33965 11.15829 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017218 B = 0.002084 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.785770 B =13431.065758 C =13834.914302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.259 4.259 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.137 3.863 13 C 0.096 3.904 14 N -0.712 5.712 15 C 0.549 3.451 16 O -0.541 6.541 17 C -0.086 4.086 18 C -0.124 4.124 19 C -0.087 4.087 20 C -0.191 4.191 21 C 0.121 3.879 22 O -0.311 6.311 23 C 0.063 3.937 24 C -0.096 4.096 25 C -0.146 4.146 26 C -0.148 4.148 27 C -0.095 4.095 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.254 0.746 34 H 0.099 0.901 35 H 0.029 0.971 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.397 0.603 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.129 0.871 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.056 0.944 50 H 0.054 0.946 51 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.575 8.427 23.141 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.389 4.389 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.029 4.029 14 N -0.362 5.362 15 C 0.335 3.665 16 O -0.419 6.419 17 C -0.090 4.090 18 C -0.143 4.143 19 C -0.105 4.105 20 C -0.210 4.210 21 C 0.076 3.924 22 O -0.225 6.225 23 C -0.013 4.013 24 C -0.114 4.114 25 C -0.203 4.203 26 C -0.206 4.206 27 C -0.115 4.115 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.232 0.768 39 H 0.149 0.851 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.073 0.927 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.413 8.554 22.714 24.868 hybrid contribution 0.665 0.798 -0.288 1.078 sum -4.748 9.352 22.426 24.758 Atomic orbital electron populations 1.22391 0.99889 0.99092 1.01432 1.20885 0.91784 0.86953 0.98906 1.43614 1.76039 1.08298 1.02059 1.19062 1.04729 1.21149 0.93936 0.92017 1.25187 0.94174 1.01252 0.98161 1.70005 1.03184 1.37258 1.42537 0.86337 0.77780 0.82183 0.81184 1.19957 1.21367 1.21599 1.21061 0.94536 0.96975 0.86473 1.22521 1.01222 0.96621 0.82491 1.46064 1.13018 1.52710 1.24448 1.18190 0.85366 0.79109 0.83832 1.90762 1.20296 1.61218 1.69647 1.19880 0.93989 0.99500 0.95612 1.21298 0.95486 1.00766 0.96760 1.20874 0.99203 0.96047 0.94347 1.21381 0.92908 1.04496 1.02227 1.18804 0.88058 0.93433 0.92108 1.86076 1.36258 1.65011 1.35143 1.22926 0.97905 0.96268 0.84173 1.21130 0.97476 0.97661 0.95136 1.21785 1.01987 1.01199 0.95364 1.21832 1.01263 0.97321 1.00156 1.20474 1.00969 0.97548 0.92487 0.93641 0.93093 0.94451 0.93555 0.94718 0.93580 0.88366 0.95260 0.92776 0.91543 0.76818 0.85080 0.85120 0.85346 0.91953 0.92002 0.89971 0.92318 0.91665 0.92345 0.91646 0.92457 0.92706 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 10.21 37.16 0.38 -2.77 16 2 C 0.14 2.95 6.44 -4.04 -0.03 2.92 16 3 N -0.58 -14.06 2.43 -173.23 -0.42 -14.48 16 4 C -0.26 -6.96 9.45 -15.06 -0.14 -7.10 16 5 H 0.06 1.68 7.92 -52.48 -0.42 1.26 16 6 C 0.01 0.34 4.95 -17.43 -0.09 0.25 16 7 N -0.89 -24.66 11.47 55.49 0.64 -24.03 16 8 Si 0.90 21.47 29.60 -169.99 -5.03 16.44 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.14 3.04 5.45 -4.04 -0.02 3.02 16 13 C 0.10 1.98 6.00 -4.04 -0.02 1.96 16 14 N -0.71 -12.30 5.51 -61.25 -0.34 -12.63 16 15 C 0.55 9.84 7.77 -12.33 -0.10 9.74 16 16 O -0.54 -11.64 16.35 5.32 0.09 -11.55 16 17 C -0.09 -1.26 5.87 -104.99 -0.62 -1.88 16 18 C -0.12 -1.45 9.54 -39.17 -0.37 -1.83 16 19 C -0.09 -0.85 10.03 -39.66 -0.40 -1.25 16 20 C -0.19 -1.90 9.03 -39.35 -0.36 -2.25 16 21 C 0.12 1.46 6.68 -39.27 -0.26 1.19 16 22 O -0.31 -3.46 9.67 -19.45 -0.19 -3.65 16 23 C 0.06 0.47 4.12 37.16 0.15 0.63 16 24 C -0.10 -0.62 3.16 -90.62 -0.29 -0.91 16 25 C -0.15 -0.67 9.19 37.15 0.34 -0.33 16 26 C -0.15 -1.02 9.09 37.16 0.34 -0.69 16 27 C -0.10 -1.35 9.53 -39.02 -0.37 -1.72 16 28 H 0.04 0.86 6.64 -51.93 -0.34 0.51 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 33 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 34 H 0.10 2.44 5.52 -51.93 -0.29 2.15 16 35 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 36 H 0.05 1.13 6.64 -51.93 -0.34 0.79 16 37 H 0.07 1.55 8.14 -51.92 -0.42 1.13 16 38 H 0.40 5.76 6.50 -40.82 -0.27 5.50 16 39 H 0.13 1.32 6.40 -52.49 -0.34 0.98 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.13 0.94 6.28 -52.49 -0.33 0.61 16 42 H 0.06 0.42 7.64 -51.93 -0.40 0.03 16 43 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 48 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.14 2.15 7.65 -52.49 -0.40 1.74 16 LS Contribution 412.97 15.07 6.22 6.22 Total: -1.00 -31.41 412.97 -9.40 -40.81 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.52 Total: 3.87 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -1.85 Total: -1.01 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.12 Total: -51.14 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.10 Total: -15.19 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.41 -9.40 -40.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753094230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.506 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds