Wall clock time and date at job start Tue Mar 31 2020 18:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46624 * 2 1 4 4 C 1.36937 * 120.00360 * 275.30985 * 3 2 1 5 5 H 1.08005 * 119.99731 * 37.57107 * 4 3 2 6 6 C 1.38807 * 120.00228 * 217.58226 * 4 3 2 7 7 N 1.31623 * 120.00118 * 21.42737 * 6 4 3 8 8 Si 1.86801 * 120.00057 * 201.43162 * 6 4 3 9 9 H 1.48495 * 109.47043 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47359 * 119.99789 * 8 6 4 11 11 H 1.48497 * 109.47037 * 239.99612 * 8 6 4 12 12 C 1.46503 * 119.99915 * 95.30988 * 3 2 1 13 13 C 1.52995 * 109.47115 * 270.00030 * 12 3 2 14 14 N 1.46503 * 109.47115 * 179.97438 * 13 12 3 15 15 C 1.34775 * 119.99956 * 179.97438 * 14 13 12 16 16 O 1.21556 * 120.00303 * 359.97438 * 15 14 13 17 17 C 1.47853 * 119.99996 * 180.02562 * 15 14 13 18 18 C 1.39604 * 120.11958 * 359.97438 * 17 15 14 19 19 C 1.37965 * 119.96729 * 180.02562 * 18 17 15 20 20 C 1.38287 * 120.20957 * 359.72524 * 19 18 17 21 21 C 1.38815 * 120.23244 * 0.54662 * 20 19 18 22 22 O 1.35907 * 119.98129 * 179.72190 * 21 20 19 23 23 C 1.42905 * 117.00101 * 359.73176 * 22 21 20 24 24 C 1.52997 * 109.47103 * 179.97438 * 23 22 21 25 25 C 1.52995 * 109.47370 * 174.99916 * 24 23 22 26 26 C 1.53001 * 109.47524 * 295.00111 * 24 23 22 27 27 C 1.38492 * 120.03384 * 359.45606 * 21 20 19 28 28 H 1.08995 * 109.47281 * 299.99384 * 1 2 3 29 29 H 1.09002 * 109.47076 * 60.00228 * 1 2 3 30 30 H 1.09004 * 109.46295 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47673 * 240.00247 * 2 1 3 32 32 H 1.09002 * 109.47076 * 119.99772 * 2 1 3 33 33 H 0.97005 * 119.99981 * 180.02562 * 7 6 4 34 34 H 1.09002 * 109.47318 * 150.00002 * 12 3 2 35 35 H 1.09003 * 109.47165 * 30.00173 * 12 3 2 36 36 H 1.08994 * 109.47567 * 60.00182 * 13 12 3 37 37 H 1.09007 * 109.47089 * 299.99618 * 13 12 3 38 38 H 0.96999 * 119.99726 * 359.97438 * 14 13 12 39 39 H 1.07999 * 120.01796 * 359.97438 * 18 17 15 40 40 H 1.07999 * 119.89587 * 180.02562 * 19 18 17 41 41 H 1.07988 * 119.88603 * 180.29489 * 20 19 18 42 42 H 1.08994 * 109.47115 * 59.99982 * 23 22 21 43 43 H 1.08998 * 109.47050 * 299.99888 * 23 22 21 44 44 H 1.09002 * 109.47504 * 55.00139 * 24 23 22 45 45 H 1.09000 * 109.47099 * 59.99900 * 25 24 23 46 46 H 1.09001 * 109.47951 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.47487 * 300.00268 * 25 24 23 48 48 H 1.09005 * 109.47189 * 59.99700 * 26 24 23 49 49 H 1.08999 * 109.47677 * 180.02562 * 26 24 23 50 50 H 1.08998 * 109.47205 * 299.99900 * 26 24 23 51 51 H 1.08001 * 120.10279 * 180.25136 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1430 2.0635 -1.1808 5 1 1.4104 1.9278 -1.9627 6 6 3.2110 2.9291 -1.3728 7 7 4.3025 2.7982 -0.6491 8 14 3.0990 4.2798 -2.6583 9 1 1.7773 4.2137 -3.3319 10 1 3.2546 5.6025 -2.0014 11 1 4.1763 4.0967 -3.6638 12 6 2.3731 2.0328 1.2633 13 6 1.1424 2.7382 1.8366 14 7 1.4971 3.3892 3.1002 15 6 0.5646 4.0765 3.7891 16 8 -0.5705 4.1567 3.3618 17 6 0.9227 4.7339 5.0641 18 6 2.2257 4.6440 5.5569 19 6 2.5562 5.2582 6.7472 20 6 1.6019 5.9685 7.4522 21 6 0.3022 6.0588 6.9729 22 8 -0.6331 6.7534 7.6727 23 6 -0.2103 7.3599 8.8957 24 6 -1.3908 8.0924 9.5364 25 6 -0.9724 8.6357 10.9041 26 6 -1.8204 9.2528 8.6365 27 6 -0.0404 5.4460 5.7791 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.0487 3.4034 -0.7830 34 1 3.1615 2.7643 1.0860 35 1 2.7254 1.2834 1.9722 36 1 0.3540 2.0068 2.0139 37 1 0.7901 3.4876 1.1277 38 1 2.4030 3.3255 3.4410 39 1 2.9745 4.0931 5.0071 40 1 3.5647 5.1882 7.1272 41 1 1.8675 6.4512 8.3809 42 1 0.5901 8.0709 8.6909 43 1 0.1529 6.5901 9.5765 44 1 -2.2241 7.4006 9.6598 45 1 -0.1392 9.3275 10.7809 46 1 -1.8135 9.1571 11.3609 47 1 -0.6664 7.8090 11.5453 48 1 -2.1185 8.8658 7.6621 49 1 -2.6611 9.7750 9.0932 50 1 -0.9872 9.9447 8.5132 51 1 -1.0502 5.5189 5.4031 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753094230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:48 Heat of formation + Delta-G solvation = -62.908536 kcal Electronic energy + Delta-G solvation = -28148.516844 eV Core-core repulsion = 24240.594196 eV Total energy + Delta-G solvation = -3907.922647 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.53315 -40.54803 -38.50456 -38.03511 -36.17637 -35.72641 -33.83722 -32.43699 -31.61218 -30.80309 -29.17663 -28.06935 -27.58257 -26.28743 -24.83611 -23.50242 -23.18022 -22.15860 -21.63767 -20.99224 -19.72015 -18.55686 -17.68395 -17.31783 -17.21554 -17.05120 -16.82287 -16.48077 -16.37288 -15.67722 -15.53672 -15.29267 -15.03754 -14.86610 -14.69848 -14.47026 -14.13816 -14.06783 -13.83403 -13.66790 -13.33031 -13.23334 -13.04197 -13.01925 -12.83807 -12.65486 -12.38622 -12.31785 -12.29453 -12.17705 -12.04578 -12.03534 -11.68815 -11.60604 -11.54108 -11.50736 -11.10529 -10.55856 -10.25284 -9.96898 -9.30142 -8.60621 -7.86836 -5.49323 -0.25773 0.36119 1.41732 1.46872 1.55841 1.78306 1.92242 2.31981 2.50268 2.79787 3.20762 3.56393 3.72453 3.79418 3.83947 3.89383 4.04287 4.08470 4.15144 4.23425 4.30423 4.39207 4.43954 4.46908 4.50967 4.56246 4.66397 4.73256 4.78540 4.81616 4.84323 4.86078 4.97185 5.00746 5.08204 5.15909 5.19663 5.21126 5.26534 5.28728 5.32447 5.36083 5.36951 5.38865 5.56259 5.62195 5.66252 5.73719 6.39248 6.43952 6.52777 7.11710 7.16823 7.81908 8.34122 9.09233 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017218 B = 0.002084 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.785770 B =13431.065758 C =13834.914302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.269 4.269 5 H 0.051 0.949 6 C -0.029 4.029 7 N -0.909 5.909 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.285 1.285 12 C 0.145 3.855 13 C 0.118 3.882 14 N -0.703 5.703 15 C 0.548 3.452 16 O -0.587 6.587 17 C -0.107 4.107 18 C -0.123 4.123 19 C -0.076 4.076 20 C -0.176 4.176 21 C 0.117 3.883 22 O -0.330 6.330 23 C 0.054 3.946 24 C -0.095 4.095 25 C -0.141 4.141 26 C -0.149 4.149 27 C -0.119 4.119 28 H 0.039 0.961 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.254 0.746 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.031 0.969 38 H 0.412 0.588 39 H 0.147 0.853 40 H 0.171 0.829 41 H 0.164 0.836 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.041 0.959 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.058 8.871 25.837 27.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.011 3.989 3 N -0.318 5.318 4 C -0.400 4.400 5 H 0.069 0.931 6 C -0.227 4.227 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.216 1.216 11 H -0.212 1.212 12 C 0.018 3.982 13 C -0.009 4.009 14 N -0.354 5.354 15 C 0.336 3.664 16 O -0.469 6.469 17 C -0.110 4.110 18 C -0.142 4.142 19 C -0.094 4.094 20 C -0.195 4.195 21 C 0.072 3.928 22 O -0.244 6.244 23 C -0.020 4.020 24 C -0.114 4.114 25 C -0.198 4.198 26 C -0.206 4.206 27 C -0.139 4.139 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.250 0.750 39 H 0.165 0.835 40 H 0.188 0.812 41 H 0.181 0.819 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.085 0.915 48 H 0.060 0.940 49 H 0.084 0.916 50 H 0.079 0.921 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.880 8.988 25.435 27.253 hybrid contribution 0.164 0.671 -1.017 1.229 sum -3.716 9.659 24.417 26.520 Atomic orbital electron populations 1.22226 0.98103 1.00863 1.00323 1.21023 0.93079 0.85404 0.99406 1.43849 1.76354 1.09652 1.01943 1.19180 1.04343 1.21741 0.94700 0.93109 1.25747 0.94067 1.02814 1.00052 1.70081 1.03524 1.37866 1.43763 0.85507 0.77611 0.79783 0.79336 1.19931 1.21609 1.21203 1.20931 0.94162 0.96848 0.86267 1.22022 1.00295 0.95420 0.83113 1.45856 1.13870 1.52404 1.23305 1.18765 0.84560 0.78366 0.84707 1.90726 1.22232 1.62887 1.71074 1.19592 0.95727 1.01164 0.94519 1.21528 0.94196 1.00799 0.97670 1.21324 1.00870 0.94212 0.92971 1.21794 0.91532 1.03192 1.02969 1.18827 0.89237 0.93270 0.91500 1.86074 1.36833 1.65021 1.36466 1.23237 0.98739 0.96951 0.83104 1.21161 0.97017 0.97160 0.96050 1.21756 1.02454 1.01613 0.94007 1.21833 1.01860 0.97717 0.99203 1.20379 1.00066 0.99332 0.94148 0.94145 0.94742 0.91190 0.94337 0.92842 0.93637 0.90680 0.93361 0.93150 0.95078 0.75004 0.83492 0.81168 0.81895 0.90644 0.90314 0.90862 0.91577 0.91180 0.91502 0.93970 0.91581 0.92149 0.86423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.70 10.21 71.98 0.73 -4.96 16 2 C 0.14 5.62 6.44 86.38 0.56 6.18 16 3 N -0.60 -29.16 2.43 -701.99 -1.71 -30.87 16 4 C -0.27 -14.69 9.45 84.03 0.79 -13.90 16 5 H 0.05 2.83 7.92 -2.91 -0.02 2.81 16 6 C -0.03 -1.57 4.95 84.86 0.42 -1.15 16 7 N -0.91 -50.82 11.47 21.65 0.25 -50.58 16 8 Si 0.95 44.70 29.60 68.60 2.03 46.73 16 9 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 10 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 12 C 0.15 6.47 5.45 86.38 0.47 6.94 16 13 C 0.12 4.96 6.00 86.38 0.52 5.48 16 14 N -0.70 -24.62 5.51 -465.96 -2.57 -27.19 16 15 C 0.55 20.35 7.77 86.79 0.67 21.02 16 16 O -0.59 -26.84 16.35 -3.89 -0.06 -26.91 16 17 C -0.11 -3.14 5.87 -20.10 -0.12 -3.26 16 18 C -0.12 -2.62 9.54 22.53 0.21 -2.41 16 19 C -0.08 -1.19 10.03 22.22 0.22 -0.97 16 20 C -0.18 -2.88 9.03 22.42 0.20 -2.67 16 21 C 0.12 2.70 6.68 22.47 0.15 2.85 16 22 O -0.33 -7.13 9.67 -92.50 -0.89 -8.02 16 23 C 0.05 0.70 4.12 71.98 0.30 0.99 16 24 C -0.10 -1.10 3.16 -10.80 -0.03 -1.13 16 25 C -0.14 -0.95 9.19 71.98 0.66 -0.29 16 26 C -0.15 -1.96 9.09 71.98 0.65 -1.30 16 27 C -0.12 -3.51 9.53 22.63 0.22 -3.30 16 28 H 0.04 1.50 6.64 -2.39 -0.02 1.49 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 31 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 32 H 0.05 1.99 7.83 -2.39 -0.02 1.97 16 33 H 0.25 13.66 8.31 -92.70 -0.77 12.89 16 34 H 0.08 3.77 5.52 -2.39 -0.01 3.75 16 35 H 0.05 1.94 7.86 -2.39 -0.02 1.92 16 36 H 0.05 2.16 6.64 -2.39 -0.02 2.14 16 37 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 38 H 0.41 11.72 6.50 -92.71 -0.60 11.11 16 39 H 0.15 2.57 6.40 -2.91 -0.02 2.55 16 40 H 0.17 1.39 8.06 -2.91 -0.02 1.36 16 41 H 0.16 1.53 6.28 -2.92 -0.02 1.51 16 42 H 0.08 0.78 7.64 -2.39 -0.02 0.76 16 43 H 0.08 0.76 7.67 -2.39 -0.02 0.74 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.07 0.35 8.14 -2.39 -0.02 0.33 16 48 H 0.04 0.74 7.82 -2.38 -0.02 0.72 16 49 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 50 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.12 3.93 7.65 -2.91 -0.02 3.90 16 Total: -1.00 -70.63 412.97 3.99 -66.64 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.31 Total: 22.07 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 6.64 Total: 8.12 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -4.03 Total: -108.63 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.96 Total: -34.93 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.63 3.99 -66.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753094230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.734 kcal (2) G-P(sol) polarization free energy of solvation -70.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds