Wall clock time and date at job start Tue Mar 31 2020 18:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.46535 * 2 1 4 4 C 1.36939 * 120.00067 * 264.28674 * 3 2 1 5 5 H 1.07995 * 120.00053 * 188.64682 * 4 3 2 6 6 C 1.38817 * 119.99584 * 8.63850 * 4 3 2 7 7 N 1.31612 * 120.00081 * 24.61271 * 6 4 3 8 8 Si 1.86799 * 119.99867 * 204.60296 * 6 4 3 9 9 H 1.48498 * 109.47308 * 85.03072 * 8 6 4 10 10 H 1.48504 * 109.47002 * 205.03206 * 8 6 4 11 11 H 1.48507 * 109.47344 * 325.03081 * 8 6 4 12 12 C 1.46502 * 120.00213 * 84.29198 * 3 2 1 13 13 C 1.52997 * 109.47044 * 269.99590 * 12 3 2 14 14 N 1.46501 * 109.47305 * 179.97438 * 13 12 3 15 15 C 1.34771 * 120.00031 * 179.97438 * 14 13 12 16 16 O 1.21279 * 120.00138 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99845 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47119 * 180.02562 * 17 15 14 19 19 H 1.09007 * 109.47014 * 305.00386 * 18 17 15 20 20 C 1.53001 * 109.46992 * 65.00085 * 18 17 15 21 21 C 1.50698 * 109.47094 * 185.00254 * 18 17 15 22 22 C 1.38285 * 119.97088 * 299.72634 * 21 18 17 23 23 C 1.38250 * 120.11355 * 179.73075 * 22 21 18 24 24 C 1.38168 * 120.04793 * 0.54282 * 23 22 21 25 25 C 1.38705 * 119.94820 * 359.72975 * 24 23 22 26 26 O 1.35903 * 120.05619 * 179.97438 * 25 24 23 27 27 C 1.42893 * 117.00117 * 0.02906 * 26 25 24 28 28 C 1.38120 * 119.97427 * 120.00119 * 21 18 17 29 29 H 1.09001 * 109.47568 * 300.00084 * 1 2 3 30 30 H 1.09005 * 109.47519 * 60.00357 * 1 2 3 31 31 H 1.09002 * 109.47210 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47311 * 240.00402 * 2 1 3 33 33 H 1.08996 * 109.46938 * 119.99640 * 2 1 3 34 34 H 0.96998 * 120.00383 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47051 * 149.99226 * 12 3 2 36 36 H 1.09002 * 109.47112 * 29.99745 * 12 3 2 37 37 H 1.09004 * 109.46781 * 59.99923 * 13 12 3 38 38 H 1.09002 * 109.47292 * 300.00045 * 13 12 3 39 39 H 0.96999 * 119.99404 * 0.02562 * 14 13 12 40 40 H 1.09000 * 109.46790 * 60.00086 * 17 15 14 41 41 H 1.09002 * 109.47299 * 300.00650 * 17 15 14 42 42 H 1.09009 * 109.46995 * 180.02562 * 20 18 17 43 43 H 1.08994 * 109.47151 * 299.99960 * 20 18 17 44 44 H 1.08997 * 109.47060 * 60.00437 * 20 18 17 45 45 H 1.08002 * 119.94766 * 359.97438 * 22 21 18 46 46 H 1.07990 * 119.97506 * 180.25725 * 23 22 21 47 47 H 1.08004 * 120.02109 * 179.71285 * 24 23 22 48 48 H 1.09006 * 109.47820 * 59.99446 * 27 26 25 49 49 H 1.09000 * 109.47618 * 179.97438 * 27 26 25 50 50 H 1.09009 * 109.46887 * 299.99528 * 27 26 25 51 51 H 1.08005 * 120.02400 * 0.02562 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3577 1.9875 -1.1800 5 1 2.8469 2.9503 -1.1713 6 6 2.0731 1.3644 -2.3874 7 7 1.0958 0.4858 -2.4602 8 14 3.0769 1.7731 -3.9088 9 1 4.3046 0.9379 -3.9309 10 1 2.2688 1.4976 -5.1238 11 1 3.4555 3.2088 -3.8812 12 6 2.1433 2.1140 1.2624 13 6 0.8336 2.8475 1.5584 14 7 0.9585 3.5797 2.8211 15 6 -0.0788 4.3042 3.2854 16 8 -1.1158 4.3495 2.6581 17 6 0.0499 5.0579 4.5840 18 6 -1.2598 5.7912 4.8800 19 1 -1.5203 6.4260 4.0330 20 6 -2.3747 4.7698 5.1136 21 6 -1.0917 6.6421 6.1124 22 6 -0.7638 6.0524 7.3195 23 6 -0.6034 6.8308 8.4508 24 6 -0.7814 8.1991 8.3800 25 6 -1.1158 8.7923 7.1717 26 8 -1.2920 10.1380 7.0997 27 6 -1.1163 10.8808 8.3077 28 6 -1.2707 8.0095 6.0366 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.8967 0.0507 -3.3039 35 1 2.9551 2.8372 1.1838 36 1 2.3578 1.4134 2.0695 37 1 0.0219 2.1242 1.6369 38 1 0.6191 3.5481 0.7513 39 1 1.7880 3.5437 3.3225 40 1 0.8619 5.7808 4.5055 41 1 0.2641 4.3573 5.3911 42 1 -3.3080 5.2923 5.3241 43 1 -2.4963 4.1544 4.2223 44 1 -2.1143 4.1351 5.9606 45 1 -0.6290 4.9824 7.3779 46 1 -0.3433 6.3684 9.3914 47 1 -0.6605 8.8062 9.2651 48 1 -0.1011 10.7377 8.6780 49 1 -1.2850 11.9396 8.1111 50 1 -1.8284 10.5318 9.0556 51 1 -1.5316 8.4690 5.0946 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753095402.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:58 Heat of formation + Delta-G solvation = -50.626439 kcal Electronic energy + Delta-G solvation = -28198.134336 eV Core-core repulsion = 24290.744281 eV Total energy + Delta-G solvation = -3907.390056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.30594 -40.67331 -38.84964 -38.17101 -35.95949 -35.41286 -33.30627 -31.82419 -31.51524 -30.50614 -29.65644 -28.17125 -28.12935 -25.88563 -24.39012 -23.52685 -23.31211 -22.18445 -21.62057 -20.73923 -18.77281 -18.60057 -17.94744 -17.23869 -17.02594 -16.83304 -16.63957 -16.58510 -16.50561 -15.75780 -15.59116 -15.37208 -14.83082 -14.61914 -14.45700 -14.42545 -14.06351 -13.87470 -13.75294 -13.72928 -13.31529 -13.26103 -13.02175 -12.87072 -12.73413 -12.67019 -12.32482 -12.24946 -12.23118 -12.17727 -11.83660 -11.80339 -11.75211 -11.60928 -11.51996 -11.32505 -10.75000 -10.36918 -9.94740 -9.77158 -9.12020 -8.87616 -7.80558 -5.13827 0.37084 0.52350 1.49350 1.51713 1.58378 1.74553 2.24358 2.41277 2.58239 2.82785 3.28416 3.61321 3.79035 3.83847 3.94966 4.05645 4.16221 4.25316 4.27754 4.31231 4.38401 4.39894 4.44739 4.50888 4.62386 4.64546 4.69141 4.71534 4.73203 4.74338 4.88702 4.96455 5.05090 5.09723 5.13905 5.15376 5.22242 5.23020 5.33771 5.36841 5.42057 5.54058 5.58274 5.65332 5.71405 5.81115 5.88282 6.14957 6.36408 6.48761 6.69882 7.21406 7.40551 7.92270 8.31095 9.21162 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.022060 B = 0.001866 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.969458 B =15003.818210 C =15564.805863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.168 3.832 3 N -0.607 5.607 4 C -0.260 4.260 5 H 0.074 0.926 6 C -0.052 4.052 7 N -0.916 5.916 8 Si 0.958 3.042 9 H -0.286 1.286 10 H -0.301 1.301 11 H -0.276 1.276 12 C 0.145 3.855 13 C 0.111 3.889 14 N -0.714 5.714 15 C 0.502 3.498 16 O -0.587 6.587 17 C -0.120 4.120 18 C -0.032 4.032 19 H 0.063 0.937 20 C -0.144 4.144 21 C -0.037 4.037 22 C -0.153 4.153 23 C -0.077 4.077 24 C -0.215 4.215 25 C 0.113 3.887 26 O -0.343 6.343 27 C 0.019 3.981 28 C -0.171 4.171 29 H 0.021 0.979 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.031 0.969 34 H 0.246 0.754 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.024 0.976 39 H 0.416 0.584 40 H 0.112 0.888 41 H 0.126 0.874 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.071 0.929 45 H 0.143 0.857 46 H 0.153 0.847 47 H 0.147 0.853 48 H 0.066 0.934 49 H 0.114 0.886 50 H 0.065 0.935 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.782 14.175 28.176 31.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.043 3.957 3 N -0.329 5.329 4 C -0.390 4.390 5 H 0.092 0.908 6 C -0.248 4.248 7 N -0.563 5.563 8 Si 0.787 3.213 9 H -0.213 1.213 10 H -0.228 1.228 11 H -0.202 1.202 12 C 0.018 3.982 13 C -0.016 4.016 14 N -0.367 5.367 15 C 0.290 3.710 16 O -0.468 6.468 17 C -0.159 4.159 18 C -0.051 4.051 19 H 0.082 0.918 20 C -0.201 4.201 21 C -0.037 4.037 22 C -0.171 4.171 23 C -0.095 4.095 24 C -0.234 4.234 25 C 0.068 3.932 26 O -0.257 6.257 27 C -0.075 4.075 28 C -0.190 4.190 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.253 0.747 40 H 0.131 0.869 41 H 0.144 0.856 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.090 0.910 45 H 0.161 0.839 46 H 0.170 0.830 47 H 0.165 0.835 48 H 0.084 0.916 49 H 0.132 0.868 50 H 0.084 0.916 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.575 14.232 27.415 30.929 hybrid contribution 0.265 0.270 -1.160 1.221 sum -1.310 14.502 26.254 30.022 Atomic orbital electron populations 1.22234 0.99161 0.98686 0.99702 1.20740 0.92484 0.84371 0.98093 1.44412 1.75687 1.10562 1.02222 1.19528 1.31058 1.03743 0.84652 0.90829 1.25415 0.98771 1.00708 0.99859 1.70327 1.28101 1.32916 1.24985 0.85416 0.78623 0.77756 0.79456 1.21301 1.22821 1.20158 1.21088 0.93778 0.95009 0.88307 1.22078 1.00976 0.94203 0.84331 1.45979 1.17024 1.49592 1.24100 1.21388 0.82804 0.78883 0.87907 1.90676 1.30419 1.64561 1.61098 1.21746 0.99625 1.00431 0.94143 1.19778 0.94918 0.95931 0.94513 0.91834 1.21891 0.97528 0.98544 1.02151 1.19575 0.96866 0.92057 0.95229 1.21172 1.03051 1.01161 0.91732 1.21280 0.96205 0.92672 0.99316 1.21506 1.07839 0.97041 0.97006 1.19170 0.96502 0.82951 0.94590 1.86047 1.85792 1.16447 1.37449 1.23321 1.02120 0.96722 0.85321 1.20443 1.07654 0.93272 0.97613 0.95965 0.92804 0.94744 0.92242 0.95068 0.94457 0.92012 0.90939 0.94007 0.95700 0.74725 0.86948 0.85640 0.92954 0.92933 0.90976 0.83924 0.82965 0.83511 0.91555 0.86755 0.91626 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.52 9.58 71.98 0.69 -5.83 16 2 C 0.17 7.96 5.64 86.38 0.49 8.44 16 3 N -0.61 -29.01 2.54 -702.00 -1.78 -30.79 16 4 C -0.26 -13.89 9.70 84.03 0.82 -13.08 16 5 H 0.07 3.85 7.93 -2.91 -0.02 3.83 16 6 C -0.05 -2.88 4.91 84.86 0.42 -2.46 16 7 N -0.92 -52.39 8.54 21.65 0.18 -52.20 16 8 Si 0.96 44.85 29.62 68.60 2.03 46.88 16 9 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 10 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 C 0.15 5.36 5.82 86.38 0.50 5.87 16 13 C 0.11 4.20 5.88 86.38 0.51 4.71 16 14 N -0.71 -19.60 5.56 -463.06 -2.57 -22.17 16 15 C 0.50 14.51 7.55 87.66 0.66 15.17 16 16 O -0.59 -23.04 13.97 -3.02 -0.04 -23.08 16 17 C -0.12 -2.23 4.92 29.85 0.15 -2.08 16 18 C -0.03 -0.69 2.21 -11.54 -0.03 -0.72 16 19 H 0.06 1.66 7.69 -2.38 -0.02 1.64 16 20 C -0.14 -3.23 8.74 71.98 0.63 -2.60 16 21 C -0.04 -0.70 4.78 -19.88 -0.10 -0.79 16 22 C -0.15 -2.21 8.76 22.28 0.20 -2.02 16 23 C -0.08 -0.96 10.04 22.26 0.22 -0.73 16 24 C -0.22 -3.06 9.04 22.36 0.20 -2.85 16 25 C 0.11 2.17 6.69 22.50 0.15 2.32 16 26 O -0.34 -6.46 10.50 -92.46 -0.97 -7.43 16 27 C 0.02 0.18 9.81 113.37 1.11 1.29 16 28 C -0.17 -3.63 9.61 22.36 0.21 -3.42 16 29 H 0.02 0.97 5.98 -2.39 -0.01 0.96 16 30 H 0.05 2.96 6.28 -2.38 -0.01 2.94 16 31 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 3.18 5.87 -2.39 -0.01 3.16 16 33 H 0.03 1.29 7.97 -2.39 -0.02 1.27 16 34 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 35 H 0.06 2.13 8.03 -2.39 -0.02 2.11 16 36 H 0.07 2.27 7.95 -2.39 -0.02 2.25 16 37 H 0.04 1.78 5.93 -2.38 -0.01 1.77 16 38 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.42 7.86 8.47 -92.71 -0.79 7.08 16 40 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.13 1.57 7.58 -2.39 -0.02 1.55 16 42 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.05 1.52 5.95 -2.39 -0.01 1.51 16 44 H 0.07 1.27 7.37 -2.39 -0.02 1.25 16 45 H 0.14 1.49 7.16 -2.91 -0.02 1.47 16 46 H 0.15 1.00 8.06 -2.92 -0.02 0.98 16 47 H 0.15 1.33 6.30 -2.91 -0.02 1.31 16 48 H 0.07 0.45 7.66 -2.38 -0.02 0.43 16 49 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.07 0.45 7.66 -2.38 -0.02 0.43 16 51 H 0.12 2.64 7.94 -2.91 -0.02 2.62 16 Total: -1.00 -71.74 402.52 3.83 -67.92 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.14 Total: 19.67 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 6.84 Total: 1.21 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -4.17 Total: -105.17 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -1.01 Total: -30.50 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -71.74 3.83 -67.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753095402.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.289 kcal (2) G-P(sol) polarization free energy of solvation -71.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds