Wall clock time and date at job start Tue Mar 31 2020 18:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47395 * 2 1 4 4 C 1.36937 * 119.99853 * 275.31235 * 3 2 1 5 5 H 1.08003 * 120.00181 * 37.57571 * 4 3 2 6 6 C 1.38812 * 119.99897 * 217.58155 * 4 3 2 7 7 N 1.31625 * 120.00127 * 21.41950 * 6 4 3 8 8 Si 1.86795 * 120.00126 * 201.42339 * 6 4 3 9 9 H 1.48506 * 109.47158 * 59.99455 * 8 6 4 10 10 H 1.48501 * 109.47462 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46828 * 299.99693 * 8 6 4 12 12 C 1.46493 * 119.99954 * 95.30781 * 3 2 1 13 13 C 1.52997 * 109.47553 * 269.99939 * 12 3 2 14 14 N 1.46493 * 109.47553 * 180.02562 * 13 12 3 15 15 C 1.34777 * 120.00663 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99432 * 359.97438 * 15 14 13 17 17 C 1.50692 * 120.00775 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47388 * 179.97438 * 17 15 14 19 19 H 1.09001 * 109.47390 * 54.99809 * 18 17 15 20 20 C 1.53000 * 109.47029 * 294.99651 * 18 17 15 21 21 C 1.50707 * 109.47123 * 174.99943 * 18 17 15 22 22 C 1.38260 * 119.94520 * 60.31939 * 21 18 17 23 23 C 1.38146 * 120.05459 * 180.28185 * 22 21 18 24 24 C 1.38725 * 119.94286 * 359.42008 * 23 22 21 25 25 O 1.35904 * 120.05602 * 180.26096 * 24 23 22 26 26 C 1.42897 * 117.00177 * 180.02562 * 25 24 23 27 27 C 1.38731 * 119.89059 * 0.27945 * 24 23 22 28 28 C 1.38148 * 119.94307 * 359.97438 * 27 24 23 29 29 H 1.09001 * 109.47469 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47142 * 300.00104 * 1 2 3 31 31 H 1.09003 * 109.47404 * 59.99666 * 1 2 3 32 32 H 1.09003 * 109.46406 * 239.99877 * 2 1 3 33 33 H 1.08998 * 109.47061 * 120.00043 * 2 1 3 34 34 H 0.96989 * 119.99991 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.46965 * 150.00068 * 12 3 2 36 36 H 1.08998 * 109.47192 * 30.00136 * 12 3 2 37 37 H 1.08999 * 109.46881 * 60.00077 * 13 12 3 38 38 H 1.08998 * 109.47032 * 300.00294 * 13 12 3 39 39 H 0.97004 * 120.00314 * 0.02562 * 14 13 12 40 40 H 1.08999 * 109.47173 * 59.99639 * 17 15 14 41 41 H 1.09004 * 109.46704 * 300.00149 * 17 15 14 42 42 H 1.09001 * 109.47163 * 300.00297 * 20 18 17 43 43 H 1.08999 * 109.47216 * 60.00088 * 20 18 17 44 44 H 1.09000 * 109.47097 * 180.02562 * 20 18 17 45 45 H 1.08003 * 119.97673 * 359.97391 * 22 21 18 46 46 H 1.08005 * 120.02743 * 179.69832 * 23 22 21 47 47 H 1.08998 * 109.47567 * 59.99398 * 26 25 24 48 48 H 1.08997 * 109.47470 * 179.97438 * 26 25 24 49 49 H 1.09004 * 109.47120 * 299.99471 * 26 25 24 50 50 H 1.08003 * 120.02760 * 180.02562 * 27 24 23 51 51 H 1.08000 * 119.97406 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2113 2.9288 -1.3729 7 7 4.3028 2.7979 -0.6491 8 14 3.0996 4.2793 -2.6585 9 1 1.9629 5.1785 -2.3345 10 1 4.3621 5.0612 -2.6662 11 1 2.8846 3.6723 -3.9967 12 6 2.3732 2.0326 1.2632 13 6 1.1427 2.7383 1.8365 14 7 1.4977 3.3902 3.0994 15 6 0.5652 4.0770 3.7888 16 8 -0.5678 4.1557 3.3633 17 6 0.9305 4.7482 5.0877 18 6 -0.3001 5.4537 5.6610 19 1 -1.1175 4.7388 5.7560 20 6 -0.7206 6.5876 4.7238 21 6 0.0320 6.0202 7.0174 22 6 1.0392 6.9587 7.1457 23 6 1.3495 7.4752 8.3888 24 6 0.6415 7.0603 9.5073 25 8 0.9412 7.5708 10.7306 26 6 0.1715 7.0974 11.8376 27 6 -0.3728 6.1231 9.3751 28 6 -0.6757 5.6057 8.1305 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0490 3.4029 -0.7831 35 1 3.1617 2.7640 1.0859 36 1 2.7255 1.2833 1.9721 37 1 0.3542 2.0069 2.0139 38 1 0.7905 3.4876 1.1277 39 1 2.4040 3.3276 3.4397 40 1 1.7183 5.4800 4.9095 41 1 1.2838 3.9994 5.7967 42 1 0.0967 7.3025 4.6288 43 1 -0.9609 6.1780 3.7427 44 1 -1.5971 7.0906 5.1325 45 1 1.5872 7.2847 6.2739 46 1 2.1396 8.2047 8.4892 47 1 0.2959 6.0187 11.9319 48 1 0.5125 7.5834 12.7517 49 1 -0.8811 7.3288 11.6737 50 1 -0.9257 5.7988 10.2444 51 1 -1.4650 4.8758 8.0271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753095413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:04 Heat of formation + Delta-G solvation = -45.224788 kcal Electronic energy + Delta-G solvation = -28276.407440 eV Core-core repulsion = 24369.251618 eV Total energy + Delta-G solvation = -3907.155823 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.51402 -39.50094 -38.05634 -36.34082 -34.64662 -33.93651 -31.88918 -31.37736 -30.05536 -29.34174 -28.25897 -27.51139 -26.80949 -24.24283 -23.28211 -22.92510 -21.79274 -20.56205 -20.30705 -19.56553 -18.45766 -17.14241 -16.55652 -16.33176 -16.05292 -15.53260 -15.38118 -15.20077 -14.96233 -14.62499 -14.18379 -13.95604 -13.76237 -13.68413 -13.40874 -13.29983 -13.24350 -12.76055 -12.51300 -12.38087 -12.36575 -12.21543 -11.85640 -11.53250 -11.47718 -11.27178 -11.12746 -11.06245 -10.92636 -10.75364 -10.71125 -10.62916 -10.53218 -10.08032 -9.86561 -9.82085 -9.35342 -9.22212 -8.55382 -8.41654 -8.30483 -6.62632 -5.84053 -3.42754 1.11428 1.19282 2.96734 3.01200 3.35350 3.41095 3.45114 3.48602 3.67335 4.45711 4.49289 4.59643 4.66351 4.73359 4.76969 4.90475 5.03825 5.07782 5.14796 5.18650 5.27338 5.30031 5.38013 5.52858 5.56983 5.63588 5.70547 5.82240 5.94808 5.99910 6.05946 6.10985 6.13085 6.17857 6.18728 6.38341 6.41573 6.45581 6.51566 6.52025 6.55406 6.69092 6.90938 6.93991 7.04315 7.10934 7.16532 7.54637 7.79542 7.97991 8.47621 8.64939 9.14328 9.76209 10.34367 11.16007 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017708 B = 0.002063 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.852933 B =13569.151836 C =14217.470642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.261 4.261 5 H 0.061 0.939 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.290 1.290 11 H -0.280 1.280 12 C 0.137 3.863 13 C 0.098 3.902 14 N -0.722 5.722 15 C 0.506 3.494 16 O -0.546 6.546 17 C -0.135 4.135 18 C -0.030 4.030 19 H 0.085 0.915 20 C -0.150 4.150 21 C -0.108 4.108 22 C -0.074 4.074 23 C -0.149 4.149 24 C 0.118 3.882 25 O -0.320 6.320 26 C 0.028 3.972 27 C -0.206 4.206 28 C -0.076 4.076 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.098 0.902 36 H 0.028 0.972 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.397 0.603 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.081 0.919 44 H 0.051 0.949 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.055 0.945 48 H 0.098 0.902 49 H 0.054 0.946 50 H 0.126 0.874 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.218 6.653 22.620 24.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.390 4.390 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.216 1.216 11 H -0.206 1.206 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.372 5.372 15 C 0.292 3.708 16 O -0.425 6.425 17 C -0.175 4.175 18 C -0.049 4.049 19 H 0.103 0.897 20 C -0.207 4.207 21 C -0.108 4.108 22 C -0.092 4.092 23 C -0.168 4.168 24 C 0.073 3.927 25 O -0.234 6.234 26 C -0.067 4.067 27 C -0.225 4.225 28 C -0.094 4.094 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.230 0.770 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.070 0.930 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.073 0.927 48 H 0.117 0.883 49 H 0.073 0.927 50 H 0.144 0.856 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.697 6.895 22.313 24.296 hybrid contribution 0.190 0.564 -0.265 0.651 sum -6.507 7.459 22.048 24.168 Atomic orbital electron populations 1.22389 0.99926 0.99050 1.01393 1.20877 0.91763 0.87015 0.98863 1.43601 1.76062 1.08268 1.02101 1.18976 1.04731 1.21326 0.93999 0.92154 1.25186 0.94153 1.01229 0.98161 1.69986 1.03138 1.37331 1.42539 0.86464 0.76960 0.82319 0.81634 1.20786 1.21585 1.20612 1.21053 0.94637 0.96922 0.86386 1.22422 1.00934 0.96498 0.82920 1.46181 1.13151 1.53313 1.24605 1.20569 0.85464 0.78872 0.85887 1.90645 1.20582 1.61041 1.70220 1.21774 0.99639 1.00801 0.95317 1.19800 0.97076 0.97479 0.90512 0.89706 1.21975 1.00725 0.97071 1.00897 1.19873 0.97296 0.98457 0.95183 1.20869 0.96482 0.95398 0.96481 1.20427 1.02206 1.03710 0.90428 1.19039 0.94717 0.93855 0.85120 1.86062 1.58851 1.64368 1.14113 1.23036 0.95839 1.00061 0.87790 1.21204 1.00841 1.01534 0.98929 1.20893 0.98658 0.98550 0.91331 0.94480 0.93681 0.93117 0.93601 0.94764 0.93473 0.88438 0.95399 0.93128 0.91875 0.77006 0.88980 0.89077 0.93186 0.89993 0.93003 0.85205 0.85285 0.92665 0.88332 0.92709 0.85639 0.85718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 10.21 37.16 0.38 -2.74 16 2 C 0.14 2.95 6.44 -4.04 -0.03 2.93 16 3 N -0.58 -14.04 2.43 -173.25 -0.42 -14.46 16 4 C -0.26 -6.98 9.45 -15.06 -0.14 -7.13 16 5 H 0.06 1.63 7.92 -52.48 -0.42 1.22 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -24.64 11.47 55.49 0.64 -24.01 16 8 Si 0.90 21.36 29.60 -169.99 -5.03 16.32 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.14 3.03 5.45 -4.05 -0.02 3.01 16 13 C 0.10 1.96 6.00 -4.05 -0.02 1.94 16 14 N -0.72 -11.74 5.56 -60.30 -0.33 -12.07 16 15 C 0.51 7.98 7.55 -10.99 -0.08 7.90 16 16 O -0.55 -10.55 13.97 5.55 0.08 -10.47 16 17 C -0.14 -1.54 4.92 -27.89 -0.14 -1.67 16 18 C -0.03 -0.34 2.21 -91.77 -0.20 -0.54 16 19 H 0.08 1.04 7.69 -51.93 -0.40 0.64 16 20 C -0.15 -1.81 8.74 37.16 0.32 -1.49 16 21 C -0.11 -1.11 4.78 -104.60 -0.50 -1.61 16 22 C -0.07 -0.72 8.75 -39.61 -0.35 -1.07 16 23 C -0.15 -1.47 9.99 -39.44 -0.39 -1.87 16 24 C 0.12 1.18 6.69 -39.22 -0.26 0.92 16 25 O -0.32 -3.04 10.50 -19.44 -0.20 -3.24 16 26 C 0.03 0.16 9.81 101.05 0.99 1.15 16 27 C -0.21 -1.88 9.04 -39.43 -0.36 -2.24 16 28 C -0.08 -0.73 9.66 -39.60 -0.38 -1.12 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.84 6.64 -51.93 -0.34 0.50 16 31 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.03 0.66 7.83 -51.93 -0.41 0.26 16 34 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 35 H 0.10 2.41 5.52 -51.93 -0.29 2.13 16 36 H 0.03 0.57 7.86 -51.93 -0.41 0.17 16 37 H 0.05 1.05 6.64 -51.93 -0.34 0.70 16 38 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.40 5.44 8.47 -40.82 -0.35 5.10 16 40 H 0.09 0.92 7.58 -51.93 -0.39 0.52 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.55 7.37 -51.93 -0.38 0.16 16 43 H 0.08 1.22 5.95 -51.93 -0.31 0.91 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.13 1.10 7.15 -52.48 -0.38 0.72 16 46 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 47 H 0.05 0.26 7.66 -51.93 -0.40 -0.13 16 48 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 50 H 0.13 0.87 6.30 -52.48 -0.33 0.54 16 51 H 0.12 1.03 7.94 -52.49 -0.42 0.61 16 LS Contribution 408.98 15.07 6.16 6.16 Total: -1.00 -31.31 408.98 -8.86 -40.16 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -8.47 Total: 4.96 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.27 Total: -3.36 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: -0.12 Total: -50.53 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: -0.13 Total: -13.72 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.31 -8.86 -40.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753095413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.064 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds