Wall clock time and date at job start Tue Mar 31 2020 18:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47395 * 2 1 4 4 C 1.36937 * 119.99853 * 275.31235 * 3 2 1 5 5 H 1.08003 * 120.00181 * 37.57571 * 4 3 2 6 6 C 1.38812 * 119.99897 * 217.58155 * 4 3 2 7 7 N 1.31625 * 120.00127 * 21.41950 * 6 4 3 8 8 Si 1.86795 * 120.00126 * 201.42339 * 6 4 3 9 9 H 1.48506 * 109.47158 * 59.99455 * 8 6 4 10 10 H 1.48501 * 109.47462 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46828 * 299.99693 * 8 6 4 12 12 C 1.46493 * 119.99954 * 95.30781 * 3 2 1 13 13 C 1.52997 * 109.47553 * 269.99939 * 12 3 2 14 14 N 1.46493 * 109.47553 * 180.02562 * 13 12 3 15 15 C 1.34777 * 120.00663 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99432 * 359.97438 * 15 14 13 17 17 C 1.50692 * 120.00775 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.47388 * 179.97438 * 17 15 14 19 19 H 1.09001 * 109.47390 * 54.99809 * 18 17 15 20 20 C 1.53000 * 109.47029 * 294.99651 * 18 17 15 21 21 C 1.50707 * 109.47123 * 174.99943 * 18 17 15 22 22 C 1.38260 * 119.94520 * 60.31939 * 21 18 17 23 23 C 1.38146 * 120.05459 * 180.28185 * 22 21 18 24 24 C 1.38725 * 119.94286 * 359.42008 * 23 22 21 25 25 O 1.35904 * 120.05602 * 180.26096 * 24 23 22 26 26 C 1.42897 * 117.00177 * 180.02562 * 25 24 23 27 27 C 1.38731 * 119.89059 * 0.27945 * 24 23 22 28 28 C 1.38148 * 119.94307 * 359.97438 * 27 24 23 29 29 H 1.09001 * 109.47469 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47142 * 300.00104 * 1 2 3 31 31 H 1.09003 * 109.47404 * 59.99666 * 1 2 3 32 32 H 1.09003 * 109.46406 * 239.99877 * 2 1 3 33 33 H 1.08998 * 109.47061 * 120.00043 * 2 1 3 34 34 H 0.96989 * 119.99991 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.46965 * 150.00068 * 12 3 2 36 36 H 1.08998 * 109.47192 * 30.00136 * 12 3 2 37 37 H 1.08999 * 109.46881 * 60.00077 * 13 12 3 38 38 H 1.08998 * 109.47032 * 300.00294 * 13 12 3 39 39 H 0.97004 * 120.00314 * 0.02562 * 14 13 12 40 40 H 1.08999 * 109.47173 * 59.99639 * 17 15 14 41 41 H 1.09004 * 109.46704 * 300.00149 * 17 15 14 42 42 H 1.09001 * 109.47163 * 300.00297 * 20 18 17 43 43 H 1.08999 * 109.47216 * 60.00088 * 20 18 17 44 44 H 1.09000 * 109.47097 * 180.02562 * 20 18 17 45 45 H 1.08003 * 119.97673 * 359.97391 * 22 21 18 46 46 H 1.08005 * 120.02743 * 179.69832 * 23 22 21 47 47 H 1.08998 * 109.47567 * 59.99398 * 26 25 24 48 48 H 1.08997 * 109.47470 * 179.97438 * 26 25 24 49 49 H 1.09004 * 109.47120 * 299.99471 * 26 25 24 50 50 H 1.08003 * 120.02760 * 180.02562 * 27 24 23 51 51 H 1.08000 * 119.97406 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9278 -1.9627 6 6 3.2113 2.9288 -1.3729 7 7 4.3028 2.7979 -0.6491 8 14 3.0996 4.2793 -2.6585 9 1 1.9629 5.1785 -2.3345 10 1 4.3621 5.0612 -2.6662 11 1 2.8846 3.6723 -3.9967 12 6 2.3732 2.0326 1.2632 13 6 1.1427 2.7383 1.8365 14 7 1.4977 3.3902 3.0994 15 6 0.5652 4.0770 3.7888 16 8 -0.5678 4.1557 3.3633 17 6 0.9305 4.7482 5.0877 18 6 -0.3001 5.4537 5.6610 19 1 -1.1175 4.7388 5.7560 20 6 -0.7206 6.5876 4.7238 21 6 0.0320 6.0202 7.0174 22 6 1.0392 6.9587 7.1457 23 6 1.3495 7.4752 8.3888 24 6 0.6415 7.0603 9.5073 25 8 0.9412 7.5708 10.7306 26 6 0.1715 7.0974 11.8376 27 6 -0.3728 6.1231 9.3751 28 6 -0.6757 5.6057 8.1305 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 5.0490 3.4029 -0.7831 35 1 3.1617 2.7640 1.0859 36 1 2.7255 1.2833 1.9721 37 1 0.3542 2.0069 2.0139 38 1 0.7905 3.4876 1.1277 39 1 2.4040 3.3276 3.4397 40 1 1.7183 5.4800 4.9095 41 1 1.2838 3.9994 5.7967 42 1 0.0967 7.3025 4.6288 43 1 -0.9609 6.1780 3.7427 44 1 -1.5971 7.0906 5.1325 45 1 1.5872 7.2847 6.2739 46 1 2.1396 8.2047 8.4892 47 1 0.2959 6.0187 11.9319 48 1 0.5125 7.5834 12.7517 49 1 -0.8811 7.3288 11.6737 50 1 -0.9257 5.7988 10.2444 51 1 -1.4650 4.8758 8.0271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753095413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:03 Heat of formation + Delta-G solvation = -62.840701 kcal Electronic energy + Delta-G solvation = -28277.171324 eV Core-core repulsion = 24369.251618 eV Total energy + Delta-G solvation = -3907.919706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.28419 -40.66180 -38.86665 -38.07160 -35.76447 -35.25373 -33.82948 -32.06417 -31.53041 -30.33701 -29.57658 -28.22099 -28.06127 -26.06488 -24.23472 -23.63686 -23.26026 -22.13232 -21.63764 -20.66926 -19.10299 -18.70998 -17.95932 -17.22306 -17.03484 -16.67904 -16.60101 -16.51553 -16.19330 -15.80862 -15.45903 -15.43359 -14.93257 -14.66686 -14.52038 -14.28342 -14.24055 -14.10597 -13.91991 -13.78492 -13.34412 -13.25576 -13.05433 -12.97219 -12.80519 -12.61598 -12.39937 -12.29839 -12.27513 -12.05203 -12.01296 -11.92751 -11.71662 -11.64586 -11.51362 -11.49366 -10.70627 -10.53374 -9.93736 -9.92321 -9.02627 -8.58989 -7.85575 -5.48368 0.41756 0.45849 1.44389 1.47829 1.53876 1.74542 2.29216 2.41545 2.51749 2.81467 3.21958 3.64880 3.76896 3.83997 3.96330 4.04931 4.13454 4.22999 4.31937 4.34537 4.40246 4.46309 4.47456 4.47884 4.53626 4.58878 4.71687 4.72571 4.77117 4.79381 4.82905 4.84965 4.87368 5.04089 5.08635 5.11431 5.24535 5.25717 5.28865 5.30935 5.39612 5.46065 5.54843 5.57139 5.67309 5.75913 5.77113 5.84581 6.45414 6.47662 6.69840 7.15293 7.37967 7.83449 8.35586 9.10108 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.017708 B = 0.002063 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.852933 B =13569.151836 C =14217.470642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.136 3.864 3 N -0.598 5.598 4 C -0.271 4.271 5 H 0.051 0.949 6 C -0.029 4.029 7 N -0.910 5.910 8 Si 0.951 3.049 9 H -0.286 1.286 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.145 3.855 13 C 0.121 3.879 14 N -0.718 5.718 15 C 0.504 3.496 16 O -0.584 6.584 17 C -0.124 4.124 18 C -0.023 4.023 19 H 0.073 0.927 20 C -0.147 4.147 21 C -0.115 4.115 22 C -0.076 4.076 23 C -0.161 4.161 24 C 0.108 3.892 25 O -0.338 6.338 26 C 0.019 3.981 27 C -0.208 4.208 28 C -0.082 4.082 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.036 0.964 33 H 0.052 0.948 34 H 0.254 0.746 35 H 0.073 0.927 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.026 0.974 39 H 0.411 0.589 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.141 0.859 46 H 0.137 0.863 47 H 0.063 0.937 48 H 0.117 0.883 49 H 0.063 0.937 50 H 0.146 0.854 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 6.747 24.525 26.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.401 4.401 5 H 0.068 0.932 6 C -0.227 4.227 7 N -0.553 5.553 8 Si 0.779 3.221 9 H -0.213 1.213 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.018 3.982 13 C -0.006 4.006 14 N -0.369 5.369 15 C 0.292 3.708 16 O -0.465 6.465 17 C -0.164 4.164 18 C -0.042 4.042 19 H 0.091 0.909 20 C -0.204 4.204 21 C -0.115 4.115 22 C -0.094 4.094 23 C -0.180 4.180 24 C 0.063 3.937 25 O -0.252 6.252 26 C -0.075 4.075 27 C -0.226 4.226 28 C -0.100 4.100 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.044 0.956 39 H 0.247 0.753 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.159 0.841 46 H 0.155 0.845 47 H 0.082 0.918 48 H 0.135 0.865 49 H 0.081 0.919 50 H 0.163 0.837 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.716 6.977 24.246 26.109 hybrid contribution 0.152 0.508 -0.770 0.935 sum -6.564 7.485 23.476 25.499 Atomic orbital electron populations 1.22214 0.98004 1.00825 1.00344 1.21012 0.93169 0.85496 0.99246 1.43846 1.76406 1.09617 1.02035 1.19117 1.04353 1.21868 0.94791 0.93153 1.25762 0.94011 1.02849 1.00086 1.70075 1.03486 1.37931 1.43833 0.85613 0.76565 0.79977 0.79923 1.21271 1.21328 1.20061 1.20928 0.94490 0.96719 0.86111 1.21845 0.99669 0.95220 0.83828 1.46050 1.14235 1.53288 1.23376 1.21356 0.84585 0.78000 0.86816 1.90640 1.22277 1.62160 1.71378 1.21791 1.00253 1.01443 0.92901 1.19677 0.96620 0.96844 0.91044 0.90851 1.21915 1.01457 0.97580 0.99425 1.19747 0.98083 0.99176 0.94530 1.20989 0.96366 0.95125 0.96908 1.20624 1.02657 1.04098 0.90622 1.19254 0.94899 0.93999 0.85547 1.86041 1.59773 1.64788 1.14593 1.23311 0.96111 1.00865 0.87262 1.21415 1.00676 1.01088 0.99464 1.21085 0.98810 0.98744 0.91385 0.91242 0.94079 0.94736 0.94516 0.93005 0.93662 0.90881 0.93793 0.93609 0.95565 0.75292 0.86926 0.86723 0.92023 0.93128 0.92554 0.84125 0.84532 0.91824 0.86479 0.91874 0.83677 0.84678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.57 10.21 71.98 0.73 -4.84 16 2 C 0.14 5.60 6.44 86.38 0.56 6.16 16 3 N -0.60 -29.08 2.43 -702.03 -1.71 -30.79 16 4 C -0.27 -14.71 9.45 84.03 0.79 -13.92 16 5 H 0.05 2.78 7.92 -2.91 -0.02 2.76 16 6 C -0.03 -1.58 4.95 84.86 0.42 -1.16 16 7 N -0.91 -50.89 11.47 21.65 0.25 -50.64 16 8 Si 0.95 44.34 29.60 68.60 2.03 46.37 16 9 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 10 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.14 6.39 5.45 86.38 0.47 6.86 16 13 C 0.12 4.92 6.00 86.38 0.52 5.43 16 14 N -0.72 -22.89 5.56 -463.09 -2.57 -25.47 16 15 C 0.50 15.59 7.55 87.65 0.66 16.25 16 16 O -0.58 -22.83 13.97 -3.05 -0.04 -22.88 16 17 C -0.12 -2.59 4.92 29.84 0.15 -2.45 16 18 C -0.02 -0.49 2.21 -11.54 -0.03 -0.52 16 19 H 0.07 1.74 7.69 -2.39 -0.02 1.73 16 20 C -0.15 -3.48 8.74 71.98 0.63 -2.85 16 21 C -0.12 -2.16 4.78 -19.85 -0.09 -2.25 16 22 C -0.08 -1.34 8.75 22.25 0.19 -1.14 16 23 C -0.16 -2.94 9.99 22.36 0.22 -2.71 16 24 C 0.11 1.99 6.69 22.50 0.15 2.14 16 25 O -0.34 -5.86 10.50 -92.47 -0.97 -6.83 16 26 C 0.02 0.17 9.81 113.37 1.11 1.28 16 27 C -0.21 -3.38 9.04 22.37 0.20 -3.17 16 28 C -0.08 -1.43 9.66 22.25 0.22 -1.22 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.04 1.50 6.64 -2.38 -0.02 1.48 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 33 H 0.05 1.93 7.83 -2.39 -0.02 1.91 16 34 H 0.25 13.73 8.31 -92.72 -0.77 12.96 16 35 H 0.07 3.65 5.52 -2.39 -0.01 3.64 16 36 H 0.04 1.77 7.86 -2.39 -0.02 1.75 16 37 H 0.05 1.90 6.64 -2.39 -0.02 1.88 16 38 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.41 10.73 8.47 -92.71 -0.79 9.94 16 40 H 0.11 1.94 7.58 -2.39 -0.02 1.93 16 41 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 42 H 0.06 1.28 7.37 -2.39 -0.02 1.26 16 43 H 0.05 1.53 5.95 -2.39 -0.01 1.52 16 44 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.14 2.07 7.15 -2.91 -0.02 2.05 16 46 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 47 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 48 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 49 H 0.06 0.46 7.66 -2.39 -0.02 0.45 16 50 H 0.15 1.67 6.30 -2.91 -0.02 1.65 16 51 H 0.14 1.99 7.94 -2.91 -0.02 1.97 16 Total: -1.00 -68.10 408.98 4.03 -64.07 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.13 Total: 24.26 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.91 Total: 1.90 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -4.03 Total: -106.90 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -1.01 Total: -29.71 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -68.10 4.03 -64.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753095413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.231 kcal (2) G-P(sol) polarization free energy of solvation -68.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds