Wall clock time and date at job start Tue Mar 31 2020 17:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 C 1.53007 * 109.47352 * 120.00125 * 2 1 3 5 5 O 1.42900 * 109.46862 * 64.99446 * 4 2 1 6 6 C 1.42906 * 113.99734 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.46842 * 30.00509 * 6 5 4 8 8 C 1.52997 * 109.47321 * 270.00521 * 6 5 4 9 9 C 1.50697 * 109.46831 * 150.00157 * 6 5 4 10 10 O 1.21277 * 120.00325 * 5.00647 * 9 6 5 11 11 N 1.34774 * 119.99710 * 185.00150 * 9 6 5 12 12 C 1.46505 * 120.00004 * 180.02562 * 11 9 6 13 13 C 1.50698 * 109.47186 * 180.02562 * 12 11 9 14 14 C 1.38239 * 120.00106 * 269.72720 * 13 12 11 15 15 C 1.38228 * 120.00333 * 179.76752 * 14 13 12 16 16 C 1.38236 * 119.99604 * 0.48326 * 15 14 13 17 17 C 1.50707 * 119.99821 * 179.76671 * 16 15 14 18 18 N 1.46497 * 109.47356 * 270.02414 * 17 16 15 19 19 C 1.36935 * 120.00029 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00239 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99974 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00032 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99920 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46969 * 90.00021 * 23 21 19 25 25 H 1.48502 * 109.47066 * 209.99512 * 23 21 19 26 26 H 1.48497 * 109.47184 * 329.99827 * 23 21 19 27 27 C 1.38234 * 120.00371 * 359.79284 * 16 15 14 28 28 C 1.38237 * 120.00015 * 359.95295 * 27 16 15 29 29 H 1.08998 * 109.47099 * 59.99677 * 1 2 3 30 30 H 1.09005 * 109.47484 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47016 * 299.99965 * 1 2 3 32 32 H 1.09001 * 109.47175 * 239.99504 * 2 1 3 33 33 H 1.09005 * 109.47164 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46957 * 299.99875 * 3 2 1 35 35 H 1.09000 * 109.47096 * 60.00084 * 3 2 1 36 36 H 1.09000 * 109.46921 * 304.99825 * 4 2 1 37 37 H 1.08995 * 109.46913 * 184.99909 * 4 2 1 38 38 H 1.09002 * 109.47153 * 299.99798 * 8 6 5 39 39 H 1.09001 * 109.46832 * 179.97438 * 8 6 5 40 40 H 1.09004 * 109.47261 * 59.99970 * 8 6 5 41 41 H 0.96997 * 120.00628 * 0.02562 * 11 9 6 42 42 H 1.09001 * 109.47078 * 300.00148 * 12 11 9 43 43 H 1.09000 * 109.46842 * 60.00048 * 12 11 9 44 44 H 1.07999 * 119.99648 * 359.97438 * 14 13 12 45 45 H 1.08001 * 120.00391 * 180.25092 * 15 14 13 46 46 H 1.08994 * 109.47017 * 30.02889 * 17 16 15 47 47 H 1.09001 * 109.46675 * 150.02416 * 17 16 15 48 48 H 0.97003 * 119.99611 * 359.97438 * 18 17 16 49 49 H 0.96998 * 120.00283 * 180.02562 * 22 21 19 50 50 H 1.08004 * 120.00479 * 179.97438 * 27 16 15 51 51 H 1.07998 * 120.00413 * 180.02562 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.6619 -2.0982 1.1920 6 6 2.0923 -2.8664 2.3175 7 1 2.1399 -2.2256 3.1980 8 6 3.4782 -3.4505 2.0364 9 6 1.1154 -3.9870 2.5640 10 8 0.1966 -4.1709 1.7941 11 7 1.2628 -4.7849 3.6401 12 6 0.3134 -5.8747 3.8795 13 6 0.6985 -6.6092 5.1378 14 6 1.5582 -7.6896 5.0718 15 6 1.9153 -8.3603 6.2265 16 6 1.4047 -7.9568 7.4461 17 6 1.7899 -8.6913 8.7045 18 7 0.8406 -9.7811 8.9438 19 6 0.9897 -10.5912 10.0377 20 1 1.8075 -10.4270 10.7238 21 6 0.0899 -11.6235 10.2648 22 7 0.2336 -12.4024 11.3159 23 14 -1.3241 -11.9079 9.0777 24 1 -0.8945 -12.8495 8.0127 25 1 -2.4786 -12.4849 9.8123 26 1 -1.7233 -10.6157 8.4646 27 6 0.5405 -6.8799 7.5115 28 6 0.1875 -6.2059 6.3573 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2618 2.1370 37 1 3.1263 -0.6444 1.2951 38 1 3.4307 -4.0913 1.1560 39 1 3.8066 -4.0360 2.8951 40 1 4.1848 -2.6399 1.8581 41 1 1.9974 -4.6378 4.2561 42 1 -0.6902 -5.4643 3.9915 43 1 0.3318 -6.5645 3.0357 44 1 1.9536 -8.0076 4.1184 45 1 2.5902 -9.2020 6.1755 46 1 2.7935 -9.1016 8.5929 47 1 1.7712 -8.0013 9.5480 48 1 0.1059 -9.9283 8.3278 49 1 -0.3950 -13.1240 11.4744 50 1 0.1412 -6.5649 8.4643 51 1 -0.4873 -5.3643 6.4084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753598949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:30 Heat of formation + Delta-G solvation = -61.621156 kcal Electronic energy + Delta-G solvation = -27490.471502 eV Core-core repulsion = 23582.604680 eV Total energy + Delta-G solvation = -3907.866822 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.39060 -39.39978 -38.36532 -35.76507 -35.49353 -34.51438 -32.46747 -31.58234 -30.88111 -30.40010 -27.55394 -27.41671 -26.70223 -24.96827 -23.73603 -22.64919 -22.05502 -20.95832 -20.66830 -20.47903 -17.91944 -17.79779 -17.48834 -16.30775 -16.04878 -15.87313 -15.61549 -15.14954 -14.92547 -14.75605 -14.62511 -14.32292 -14.00970 -13.73868 -13.66832 -13.37438 -13.10575 -13.01536 -12.96240 -12.73804 -12.65699 -12.48175 -12.43514 -12.20697 -12.03985 -11.95495 -11.51837 -11.45433 -11.33302 -11.02476 -10.98870 -10.84027 -10.67316 -10.34813 -10.17613 -9.83361 -9.63672 -9.37200 -8.95916 -8.85538 -8.61301 -7.29067 -5.80802 -3.17208 1.21661 1.47341 2.32404 2.57534 3.36303 3.40494 3.43739 3.45907 3.85342 4.26749 4.36286 4.41452 4.49758 4.54881 4.56556 4.58735 4.68668 4.82067 4.90378 5.00973 5.03982 5.11951 5.13473 5.19089 5.20133 5.22204 5.29259 5.44728 5.48224 5.49249 5.51577 5.57522 5.61843 5.65694 5.69358 5.70422 5.84235 6.00104 6.01470 6.01938 6.07850 6.33241 6.45537 6.47100 6.54338 6.65145 6.93417 7.05225 7.20062 7.92618 7.93976 8.37802 9.16249 9.88520 10.08168 11.37236 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031543 B = 0.001650 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.475017 B =16969.135419 C =17250.773918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.146 4.146 4 C 0.063 3.937 5 O -0.355 6.355 6 C 0.072 3.928 7 H 0.085 0.915 8 C -0.171 4.171 9 C 0.513 3.487 10 O -0.519 6.519 11 N -0.723 5.723 12 C 0.167 3.833 13 C -0.123 4.123 14 C -0.103 4.103 15 C -0.108 4.108 16 C -0.071 4.071 17 C 0.189 3.811 18 N -0.750 5.750 19 C -0.248 4.248 20 H 0.091 0.909 21 C 0.008 3.992 22 N -0.932 5.932 23 Si 0.883 3.117 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.277 1.277 27 C -0.107 4.107 28 C -0.104 4.104 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.402 0.598 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.120 0.880 45 H 0.126 0.874 46 H 0.037 0.963 47 H 0.036 0.964 48 H 0.363 0.637 49 H 0.260 0.740 50 H 0.126 0.874 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.593 26.878 -21.650 35.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.014 4.014 5 O -0.273 6.273 6 C 0.010 3.990 7 H 0.103 0.897 8 C -0.228 4.228 9 C 0.297 3.703 10 O -0.394 6.394 11 N -0.377 5.377 12 C 0.044 3.956 13 C -0.124 4.124 14 C -0.122 4.122 15 C -0.126 4.126 16 C -0.071 4.071 17 C 0.063 3.937 18 N -0.396 5.396 19 C -0.378 4.378 20 H 0.109 0.891 21 C -0.188 4.188 22 N -0.580 5.580 23 Si 0.713 3.287 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.203 1.203 27 C -0.126 4.126 28 C -0.122 4.122 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.236 0.764 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.138 0.862 45 H 0.144 0.856 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.196 0.804 49 H 0.070 0.930 50 H 0.144 0.856 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.890 26.566 -22.162 35.094 hybrid contribution -0.558 -0.224 -0.122 0.613 sum 5.332 26.342 -22.283 34.912 Atomic orbital electron populations 1.21803 0.94338 1.02906 1.01335 1.21083 0.97026 0.95474 0.97672 1.21796 1.01010 0.95190 1.02361 1.22732 0.98511 0.81580 0.98553 1.88045 1.78231 1.20012 1.40974 1.21862 0.93291 0.92712 0.91108 0.89688 1.22237 0.94800 1.02228 1.03571 1.20398 0.85842 0.82982 0.81032 1.90733 1.32546 1.70686 1.45424 1.46062 1.31996 1.32576 1.27043 1.20162 0.92610 0.87886 0.94909 1.19707 1.00551 0.98040 0.94116 1.21023 0.97436 0.95337 0.98401 1.21171 1.00177 0.99483 0.91789 1.20453 0.95536 0.95014 0.96125 1.19670 0.93641 0.89490 0.90931 1.42683 1.31667 1.35185 1.30066 1.19055 1.11014 1.07081 1.00618 0.89084 1.24649 0.98788 0.97842 0.97552 1.69695 1.38824 1.20946 1.28508 0.86567 0.83149 0.77896 0.81075 1.20990 1.21617 1.20274 1.21169 0.97307 0.95590 0.98525 1.21023 0.99581 0.99706 0.91914 0.92788 0.91411 0.92977 0.90265 0.92518 0.91906 0.92469 0.93157 0.93138 0.90977 0.90814 0.91176 0.76358 0.90658 0.90616 0.86154 0.85574 0.94502 0.94571 0.80437 0.92975 0.85618 0.86191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.09 37.16 0.34 -0.73 16 2 C -0.09 -0.60 3.16 -90.62 -0.29 -0.89 16 3 C -0.15 -0.66 9.19 37.16 0.34 -0.32 16 4 C 0.06 0.42 5.13 37.16 0.19 0.61 16 5 O -0.35 -3.46 9.06 -55.09 -0.50 -3.95 16 6 C 0.07 0.56 3.13 -27.89 -0.09 0.47 16 7 H 0.09 0.47 7.79 -51.93 -0.40 0.06 16 8 C -0.17 -0.99 9.48 37.16 0.35 -0.64 16 9 C 0.51 5.44 7.18 -10.99 -0.08 5.37 16 10 O -0.52 -7.89 16.51 -14.30 -0.24 -8.13 16 11 N -0.72 -6.24 5.51 -61.47 -0.34 -6.58 16 12 C 0.17 1.68 5.80 -5.19 -0.03 1.65 16 13 C -0.12 -1.36 5.25 -104.62 -0.55 -1.91 16 14 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 15 C -0.11 -1.48 9.70 -39.59 -0.38 -1.87 16 16 C -0.07 -1.10 5.25 -104.62 -0.55 -1.64 16 17 C 0.19 3.57 6.38 -5.19 -0.03 3.54 16 18 N -0.75 -17.77 5.40 -61.09 -0.33 -18.10 16 19 C -0.25 -6.99 10.47 -15.06 -0.16 -7.14 16 20 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 21 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 22 N -0.93 -29.15 13.97 55.49 0.78 -28.37 16 23 Si 0.88 22.24 27.74 -169.99 -4.71 17.52 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 26 H -0.28 -6.64 6.52 56.52 0.37 -6.27 16 27 C -0.11 -1.49 9.70 -39.58 -0.38 -1.87 16 28 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.65 7.82 -51.93 -0.41 0.24 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.05 0.30 8.09 -51.93 -0.42 -0.12 16 37 H 0.05 0.26 7.87 -51.93 -0.41 -0.15 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.32 7.93 -51.93 -0.41 -0.09 16 40 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 41 H 0.40 2.58 8.25 -40.82 -0.34 2.24 16 42 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 43 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 46 H 0.04 0.69 8.09 -51.93 -0.42 0.27 16 47 H 0.04 0.68 8.09 -51.93 -0.42 0.26 16 48 H 0.36 8.56 5.52 -40.82 -0.23 8.34 16 49 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 50 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 51 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 421.80 15.07 6.36 6.36 Total: -1.00 -34.50 421.80 -10.11 -44.61 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -8.94 Total: 5.06 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.18 Total: -8.42 kcal Atomic # 7 Polarization: -53.16 SS G_CDS: 0.11 Total: -53.05 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.74 Total: -12.08 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.50 -10.11 -44.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753598949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.015 kcal (2) G-P(sol) polarization free energy of solvation -34.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds