Wall clock time and date at job start Tue Mar 31 2020 17:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 C 1.53007 * 109.47352 * 120.00125 * 2 1 3 5 5 O 1.42900 * 109.46862 * 64.99446 * 4 2 1 6 6 C 1.42906 * 113.99734 * 179.97438 * 5 4 2 7 7 H 1.09002 * 109.46842 * 30.00509 * 6 5 4 8 8 C 1.52997 * 109.47321 * 270.00521 * 6 5 4 9 9 C 1.50697 * 109.46831 * 150.00157 * 6 5 4 10 10 O 1.21277 * 120.00325 * 5.00647 * 9 6 5 11 11 N 1.34774 * 119.99710 * 185.00150 * 9 6 5 12 12 C 1.46505 * 120.00004 * 180.02562 * 11 9 6 13 13 C 1.50698 * 109.47186 * 180.02562 * 12 11 9 14 14 C 1.38239 * 120.00106 * 269.72720 * 13 12 11 15 15 C 1.38228 * 120.00333 * 179.76752 * 14 13 12 16 16 C 1.38236 * 119.99604 * 0.48326 * 15 14 13 17 17 C 1.50707 * 119.99821 * 179.76671 * 16 15 14 18 18 N 1.46497 * 109.47356 * 270.02414 * 17 16 15 19 19 C 1.36935 * 120.00029 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00239 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99974 * 179.97438 * 19 18 17 22 22 N 1.31614 * 120.00032 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99920 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46969 * 90.00021 * 23 21 19 25 25 H 1.48502 * 109.47066 * 209.99512 * 23 21 19 26 26 H 1.48497 * 109.47184 * 329.99827 * 23 21 19 27 27 C 1.38234 * 120.00371 * 359.79284 * 16 15 14 28 28 C 1.38237 * 120.00015 * 359.95295 * 27 16 15 29 29 H 1.08998 * 109.47099 * 59.99677 * 1 2 3 30 30 H 1.09005 * 109.47484 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47016 * 299.99965 * 1 2 3 32 32 H 1.09001 * 109.47175 * 239.99504 * 2 1 3 33 33 H 1.09005 * 109.47164 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46957 * 299.99875 * 3 2 1 35 35 H 1.09000 * 109.47096 * 60.00084 * 3 2 1 36 36 H 1.09000 * 109.46921 * 304.99825 * 4 2 1 37 37 H 1.08995 * 109.46913 * 184.99909 * 4 2 1 38 38 H 1.09002 * 109.47153 * 299.99798 * 8 6 5 39 39 H 1.09001 * 109.46832 * 179.97438 * 8 6 5 40 40 H 1.09004 * 109.47261 * 59.99970 * 8 6 5 41 41 H 0.96997 * 120.00628 * 0.02562 * 11 9 6 42 42 H 1.09001 * 109.47078 * 300.00148 * 12 11 9 43 43 H 1.09000 * 109.46842 * 60.00048 * 12 11 9 44 44 H 1.07999 * 119.99648 * 359.97438 * 14 13 12 45 45 H 1.08001 * 120.00391 * 180.25092 * 15 14 13 46 46 H 1.08994 * 109.47017 * 30.02889 * 17 16 15 47 47 H 1.09001 * 109.46675 * 150.02416 * 17 16 15 48 48 H 0.97003 * 119.99611 * 359.97438 * 18 17 16 49 49 H 0.96998 * 120.00283 * 180.02562 * 22 21 19 50 50 H 1.08004 * 120.00479 * 179.97438 * 27 16 15 51 51 H 1.07998 * 120.00413 * 180.02562 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 8 1.6619 -2.0982 1.1920 6 6 2.0923 -2.8664 2.3175 7 1 2.1399 -2.2256 3.1980 8 6 3.4782 -3.4505 2.0364 9 6 1.1154 -3.9870 2.5640 10 8 0.1966 -4.1709 1.7941 11 7 1.2628 -4.7849 3.6401 12 6 0.3134 -5.8747 3.8795 13 6 0.6985 -6.6092 5.1378 14 6 1.5582 -7.6896 5.0718 15 6 1.9153 -8.3603 6.2265 16 6 1.4047 -7.9568 7.4461 17 6 1.7899 -8.6913 8.7045 18 7 0.8406 -9.7811 8.9438 19 6 0.9897 -10.5912 10.0377 20 1 1.8075 -10.4270 10.7238 21 6 0.0899 -11.6235 10.2648 22 7 0.2336 -12.4024 11.3159 23 14 -1.3241 -11.9079 9.0777 24 1 -0.8945 -12.8495 8.0127 25 1 -2.4786 -12.4849 9.8123 26 1 -1.7233 -10.6157 8.4646 27 6 0.5405 -6.8799 7.5115 28 6 0.1875 -6.2059 6.3573 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2618 2.1370 37 1 3.1263 -0.6444 1.2951 38 1 3.4307 -4.0913 1.1560 39 1 3.8066 -4.0360 2.8951 40 1 4.1848 -2.6399 1.8581 41 1 1.9974 -4.6378 4.2561 42 1 -0.6902 -5.4643 3.9915 43 1 0.3318 -6.5645 3.0357 44 1 1.9536 -8.0076 4.1184 45 1 2.5902 -9.2020 6.1755 46 1 2.7935 -9.1016 8.5929 47 1 1.7712 -8.0013 9.5480 48 1 0.1059 -9.9283 8.3278 49 1 -0.3950 -13.1240 11.4744 50 1 0.1412 -6.5649 8.4643 51 1 -0.4873 -5.3643 6.4084 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753598949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:29 Heat of formation + Delta-G solvation = -82.931905 kcal Electronic energy + Delta-G solvation = -27491.395606 eV Core-core repulsion = 23582.604680 eV Total energy + Delta-G solvation = -3908.790926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.19591 -40.36748 -39.03579 -37.07589 -36.08620 -35.82833 -33.93796 -32.73891 -31.87317 -31.62744 -28.66806 -28.02274 -27.18978 -26.17955 -24.67173 -23.71813 -23.64312 -21.78240 -21.58529 -21.12850 -19.87543 -18.59365 -18.12038 -17.03411 -16.89167 -16.73121 -16.65641 -16.56835 -16.12076 -15.80115 -15.51029 -15.34338 -14.94583 -14.78458 -14.63353 -14.36190 -14.28415 -14.05240 -14.04425 -13.56186 -13.43157 -13.29729 -13.23502 -13.16224 -13.06138 -12.89902 -12.85638 -12.49331 -12.20032 -11.97853 -11.93089 -11.92182 -11.81203 -11.77542 -11.50582 -11.04246 -11.03688 -10.52192 -10.18414 -9.84389 -9.67266 -9.34178 -8.05446 -5.39359 0.19561 0.48326 1.36719 1.38490 1.46195 1.53737 1.88006 2.45678 2.72642 2.98182 3.26178 3.60460 3.69164 3.85445 3.87298 3.89321 3.90283 4.01072 4.02488 4.09422 4.12740 4.20869 4.26679 4.46542 4.54437 4.61902 4.65966 4.67609 4.69899 4.72381 4.80547 4.82705 4.87933 4.88336 4.99235 5.04810 5.05195 5.18274 5.19455 5.23328 5.30335 5.39487 5.42139 5.42850 5.58365 5.72616 5.78025 6.03207 6.12120 6.18283 6.51983 7.04166 7.17796 7.79327 7.99048 9.15775 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.031543 B = 0.001650 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.475017 B =16969.135419 C =17250.773918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.141 4.141 4 C 0.059 3.941 5 O -0.386 6.386 6 C 0.072 3.928 7 H 0.113 0.887 8 C -0.165 4.165 9 C 0.510 3.490 10 O -0.573 6.573 11 N -0.708 5.708 12 C 0.171 3.829 13 C -0.107 4.107 14 C -0.097 4.097 15 C -0.114 4.114 16 C -0.091 4.091 17 C 0.189 3.811 18 N -0.753 5.753 19 C -0.238 4.238 20 H 0.061 0.939 21 C -0.058 4.058 22 N -0.981 5.981 23 Si 0.952 3.048 24 H -0.278 1.278 25 H -0.293 1.293 26 H -0.256 1.256 27 C -0.115 4.115 28 C -0.098 4.098 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.416 0.584 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.143 0.857 45 H 0.126 0.874 46 H 0.036 0.964 47 H 0.035 0.965 48 H 0.365 0.635 49 H 0.259 0.741 50 H 0.125 0.875 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.891 29.085 -23.494 38.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.198 4.198 4 C -0.017 4.017 5 O -0.305 6.305 6 C 0.011 3.989 7 H 0.131 0.869 8 C -0.223 4.223 9 C 0.297 3.703 10 O -0.451 6.451 11 N -0.362 5.362 12 C 0.048 3.952 13 C -0.108 4.108 14 C -0.115 4.115 15 C -0.132 4.132 16 C -0.092 4.092 17 C 0.063 3.937 18 N -0.399 5.399 19 C -0.368 4.368 20 H 0.079 0.921 21 C -0.250 4.250 22 N -0.631 5.631 23 Si 0.779 3.221 24 H -0.204 1.204 25 H -0.220 1.220 26 H -0.181 1.181 27 C -0.133 4.133 28 C -0.116 4.116 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.253 0.747 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.161 0.839 45 H 0.144 0.856 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.198 0.802 49 H 0.068 0.932 50 H 0.143 0.857 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.239 28.821 -24.006 38.025 hybrid contribution -0.565 -0.817 0.441 1.087 sum 5.674 28.005 -23.565 37.037 Atomic orbital electron populations 1.21769 0.95351 1.01102 1.01924 1.21117 0.96178 0.96725 0.97420 1.21755 1.01607 0.93671 1.02788 1.22894 0.99715 0.80312 0.98797 1.88021 1.78963 1.21488 1.41998 1.22001 0.93019 0.92095 0.91808 0.86906 1.22228 0.93857 1.02660 1.03547 1.20997 0.85508 0.83367 0.80426 1.90712 1.34872 1.72218 1.47286 1.45909 1.31895 1.31665 1.26749 1.20055 0.92836 0.88130 0.94204 1.19779 0.99418 0.97428 0.94170 1.21213 0.96934 0.94855 0.98527 1.21221 1.00341 0.99840 0.91846 1.20155 0.97788 0.96176 0.95063 1.19731 0.92565 0.88386 0.92999 1.42706 1.32662 1.35779 1.28709 1.19061 1.09538 1.07241 1.00992 0.92149 1.25442 1.01973 0.97992 0.99583 1.69868 1.40295 1.22017 1.30920 0.85452 0.79344 0.78536 0.78724 1.20395 1.22008 1.18110 1.21217 0.97198 0.95473 0.99443 1.21208 0.99346 0.99829 0.91209 0.92051 0.94302 0.92552 0.91240 0.91510 0.91602 0.91941 0.92406 0.91227 0.92756 0.89016 0.89512 0.74707 0.90924 0.90890 0.83950 0.85571 0.94579 0.94718 0.80188 0.93232 0.85707 0.84021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.09 71.98 0.65 -1.40 16 2 C -0.10 -1.12 3.16 -10.79 -0.03 -1.16 16 3 C -0.14 -0.99 9.19 71.98 0.66 -0.32 16 4 C 0.06 0.68 5.13 71.98 0.37 1.05 16 5 O -0.39 -7.11 9.06 -129.99 -1.18 -8.29 16 6 C 0.07 0.96 3.13 29.85 0.09 1.05 16 7 H 0.11 0.85 7.79 -2.39 -0.02 0.84 16 8 C -0.17 -1.49 9.48 71.98 0.68 -0.80 16 9 C 0.51 10.03 7.18 87.66 0.63 10.66 16 10 O -0.57 -17.26 16.51 15.97 0.26 -16.99 16 11 N -0.71 -10.33 5.51 -466.79 -2.57 -12.91 16 12 C 0.17 3.00 5.80 85.63 0.50 3.49 16 13 C -0.11 -2.02 5.25 -19.86 -0.10 -2.12 16 14 C -0.10 -1.95 9.70 22.27 0.22 -1.74 16 15 C -0.11 -2.91 9.70 22.27 0.22 -2.69 16 16 C -0.09 -2.70 5.25 -19.86 -0.10 -2.80 16 17 C 0.19 7.07 6.38 85.64 0.55 7.62 16 18 N -0.75 -35.36 5.40 -347.18 -1.87 -37.24 16 19 C -0.24 -13.59 10.47 84.03 0.88 -12.71 16 20 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 21 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 22 N -0.98 -62.80 13.97 21.65 0.30 -62.50 16 23 Si 0.95 45.92 27.74 68.60 1.90 47.82 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 26 H -0.26 -11.36 6.52 99.48 0.65 -10.71 16 27 C -0.11 -2.95 9.70 22.27 0.22 -2.74 16 28 C -0.10 -1.98 9.70 22.27 0.22 -1.76 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.04 0.77 7.82 -2.38 -0.02 0.75 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.34 8.14 -2.38 -0.02 0.33 16 34 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 35 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.06 0.57 8.09 -2.39 -0.02 0.55 16 37 H 0.07 0.52 7.87 -2.39 -0.02 0.50 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 0.48 7.93 -2.39 -0.02 0.46 16 40 H 0.09 0.51 7.87 -2.38 -0.02 0.49 16 41 H 0.42 3.85 8.25 -92.71 -0.76 3.09 16 42 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 43 H 0.07 1.38 8.08 -2.39 -0.02 1.36 16 44 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 45 H 0.13 3.16 8.06 -2.91 -0.02 3.14 16 46 H 0.04 1.36 8.09 -2.39 -0.02 1.34 16 47 H 0.03 1.31 8.09 -2.39 -0.02 1.29 16 48 H 0.37 16.70 5.52 -92.71 -0.51 16.18 16 49 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 50 H 0.12 3.18 8.06 -2.91 -0.02 3.15 16 51 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -76.76 421.80 2.52 -74.25 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -0.43 Total: 25.20 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: 6.10 Total: -9.35 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -4.14 Total: -112.64 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.91 Total: -25.28 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.90 Total: 47.82 kcal Total: -76.76 2.52 -74.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753598949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.686 kcal (2) G-P(sol) polarization free energy of solvation -76.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds