Wall clock time and date at job start Tue Mar 31 2020 18:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47309 * 120.00086 * 2 1 3 5 5 H 1.09000 * 109.47521 * 60.00160 * 4 2 1 6 6 C 1.53003 * 109.47332 * 180.02562 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00286 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99538 * 179.97438 * 8 7 6 11 11 H 1.09001 * 109.47451 * 304.99464 * 10 8 7 12 12 C 1.52999 * 109.47467 * 65.00159 * 10 8 7 13 13 O 1.42906 * 109.47126 * 184.99769 * 10 8 7 14 14 C 1.42900 * 114.00209 * 149.99732 * 13 10 8 15 15 C 1.50697 * 109.46770 * 179.97438 * 14 13 10 16 16 C 1.38239 * 120.00278 * 269.72580 * 15 14 13 17 17 C 1.38236 * 119.99960 * 179.76568 * 16 15 14 18 18 C 1.38235 * 119.99986 * 0.51612 * 17 16 15 19 19 C 1.38239 * 119.99790 * 359.73937 * 18 17 16 20 20 C 1.38225 * 120.00136 * 0.02562 * 19 18 17 21 21 N 1.46505 * 109.47130 * 300.00074 * 4 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 H 1.08994 * 109.46999 * 59.99901 * 1 2 3 31 31 H 1.09000 * 109.46698 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47086 * 299.99896 * 1 2 3 33 33 H 1.08998 * 109.47497 * 240.00304 * 2 1 3 34 34 H 1.08998 * 109.47308 * 180.02562 * 3 2 1 35 35 H 1.08992 * 109.47225 * 300.00492 * 3 2 1 36 36 H 1.09003 * 109.47030 * 60.00070 * 3 2 1 37 37 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 38 38 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 39 39 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 40 40 H 1.09003 * 109.46731 * 299.99480 * 12 10 8 41 41 H 1.09001 * 109.47352 * 59.99245 * 12 10 8 42 42 H 1.08996 * 109.47552 * 179.97438 * 12 10 8 43 43 H 1.08992 * 109.47078 * 300.00263 * 14 13 10 44 44 H 1.08997 * 109.46593 * 60.00645 * 14 13 10 45 45 H 1.07999 * 120.00115 * 0.02562 * 16 15 14 46 46 H 1.08003 * 119.99868 * 180.23047 * 17 16 15 47 47 H 1.07998 * 120.00086 * 179.71811 * 18 17 16 48 48 H 1.08000 * 119.99477 * 179.97438 * 19 18 17 49 49 H 1.08004 * 119.99849 * 179.97438 * 20 19 18 50 50 H 0.97000 * 119.99792 * 264.99726 * 21 4 2 51 51 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7489 1.2492 6 6 3.5700 -0.7207 1.2495 7 7 4.0584 -1.3045 2.5013 8 6 5.3834 -1.4077 2.7249 9 8 6.1716 -1.0176 1.8897 10 6 5.8857 -2.0077 4.0128 11 1 5.4505 -1.4728 4.8569 12 6 5.4820 -3.4819 4.0802 13 8 7.3098 -1.9011 4.0645 14 6 7.8363 -1.7837 5.3878 15 6 9.3382 -1.6790 5.3233 16 6 10.1135 -2.8225 5.3709 17 6 11.4911 -2.7268 5.3069 18 6 12.0938 -1.4868 5.2060 19 6 11.3187 -0.3430 5.1636 20 6 9.9410 -0.4391 5.2228 21 7 1.5517 -0.0306 2.4454 22 6 0.3102 -0.3211 2.9447 23 1 -0.3089 -1.0596 2.4570 24 6 -0.1502 0.3291 4.0815 25 7 -1.3413 0.0460 4.5646 26 14 0.9207 1.6059 4.9256 27 1 0.6418 2.9454 4.3486 28 1 0.6202 1.6209 6.3797 29 1 2.3516 1.2662 4.7193 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 3.9337 -1.3099 0.4076 38 1 3.9331 0.3032 1.1601 39 1 3.4280 -1.6162 3.1695 40 1 4.3957 -3.5633 4.0409 41 1 5.9172 -4.0169 3.2361 42 1 5.8456 -3.9161 5.0115 43 1 7.4295 -0.8910 5.8627 44 1 7.5584 -2.6631 5.9686 45 1 9.6429 -3.7910 5.4539 46 1 12.0966 -3.6204 5.3403 47 1 13.1702 -1.4117 5.1605 48 1 11.7896 0.6258 5.0852 49 1 9.3355 0.4547 5.1901 50 1 2.1078 0.6323 2.8837 51 1 -1.6633 0.5006 5.3588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753840391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:32 Heat of formation + Delta-G solvation = -52.902887 kcal Electronic energy + Delta-G solvation = -28915.502438 eV Core-core repulsion = 25008.013668 eV Total energy + Delta-G solvation = -3907.488770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.97883 -39.40020 -37.89990 -37.10125 -34.02152 -32.95482 -32.68984 -31.13713 -31.09021 -30.54835 -28.13457 -26.47355 -26.39571 -24.48630 -23.16732 -22.80972 -21.93934 -21.56431 -20.17209 -18.96234 -17.92820 -17.41420 -17.00236 -16.69531 -15.97171 -15.52404 -15.40628 -15.33467 -14.87966 -14.40730 -14.27589 -14.11722 -13.64247 -13.58898 -13.33430 -13.26929 -13.07715 -12.98640 -12.66293 -12.57513 -12.40570 -12.24603 -12.02500 -11.55827 -11.40781 -11.27335 -11.22356 -11.11808 -11.08639 -10.90371 -10.59037 -10.37137 -10.12202 -10.03459 -9.96073 -9.50243 -9.39373 -9.14344 -9.06428 -8.98083 -8.74366 -7.37554 -5.85738 -3.21378 1.01915 1.17975 2.80563 2.96023 3.28050 3.33029 3.39152 3.55105 4.03077 4.49952 4.56249 4.58463 4.74792 4.78390 4.87084 4.88566 4.97998 5.04991 5.11435 5.18892 5.25518 5.29342 5.38576 5.40998 5.50009 5.58114 5.61874 5.71419 5.72461 5.73838 5.80428 5.97116 5.99689 6.04387 6.20312 6.26385 6.26821 6.30696 6.36647 6.50774 6.55078 6.62292 6.67495 6.74239 6.80644 6.92827 6.94613 7.34276 7.79362 7.90507 8.32525 8.45119 9.10648 9.82886 10.02679 11.31947 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.002564 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.626122 B =10916.394625 C =11648.592365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.143 4.143 4 C 0.173 3.827 5 H 0.063 0.937 6 C 0.110 3.890 7 N -0.714 5.714 8 C 0.511 3.489 9 O -0.531 6.531 10 C 0.068 3.932 11 H 0.087 0.913 12 C -0.169 4.169 13 O -0.350 6.350 14 C 0.098 3.902 15 C -0.087 4.087 16 C -0.098 4.098 17 C -0.125 4.125 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.096 4.096 21 N -0.743 5.743 22 C -0.239 4.239 23 H 0.095 0.905 24 C 0.007 3.993 25 N -0.931 5.931 26 Si 0.878 3.122 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.031 0.969 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.409 0.591 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.124 0.876 50 H 0.362 0.638 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.324 -5.210 1.090 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 C -0.201 4.201 4 C 0.063 3.937 5 H 0.081 0.919 6 C -0.014 4.014 7 N -0.368 5.368 8 C 0.296 3.704 9 O -0.407 6.407 10 C 0.007 3.993 11 H 0.105 0.895 12 C -0.227 4.227 13 O -0.268 6.268 14 C 0.022 3.978 15 C -0.087 4.087 16 C -0.116 4.116 17 C -0.143 4.143 18 C -0.134 4.134 19 C -0.142 4.142 20 C -0.114 4.114 21 N -0.387 5.387 22 C -0.369 4.369 23 H 0.112 0.888 24 C -0.189 4.189 25 N -0.578 5.578 26 Si 0.709 3.291 27 H -0.212 1.212 28 H -0.219 1.219 29 H -0.205 1.205 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.245 0.755 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.142 0.858 50 H 0.195 0.805 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 20.767 -5.034 0.378 21.371 hybrid contribution 0.148 0.907 1.216 1.524 sum 20.915 -4.128 1.594 21.378 Atomic orbital electron populations 1.21836 0.94429 1.01284 1.02215 1.21591 0.97186 0.96270 0.97776 1.21814 0.99718 0.96963 1.01567 1.20529 0.89116 0.96323 0.87681 0.91932 1.21817 0.95565 0.98557 0.85467 1.45948 1.06263 1.62932 1.21639 1.20263 0.82727 0.79221 0.88217 1.90692 1.55394 1.48266 1.46332 1.21930 0.83159 0.97258 0.96946 0.89523 1.22224 1.02652 0.94452 1.03388 1.88120 1.18278 1.94287 1.26116 1.21434 0.90369 1.00944 0.85085 1.19573 0.94005 0.93681 1.01416 1.21071 0.93812 0.97959 0.98761 1.21139 0.94685 0.97731 1.00787 1.21197 0.99873 0.92714 0.99631 1.21158 0.93771 0.98702 1.00570 1.21118 0.94930 0.97256 0.98078 1.42808 1.18343 1.47904 1.29640 1.19043 0.91292 1.19406 1.07144 0.88754 1.24644 0.96415 0.99612 0.98194 1.69683 1.17824 1.45360 1.24935 0.86668 0.80267 0.82852 0.79355 1.21168 1.21901 1.20456 0.94983 0.93833 0.89176 0.92845 0.93558 0.93896 0.91899 0.91502 0.91379 0.75460 0.90421 0.91155 0.91375 0.92191 0.92144 0.85901 0.85939 0.86067 0.85897 0.85843 0.80516 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.26 37.16 0.31 -2.17 16 2 C -0.11 -1.71 2.80 -90.62 -0.25 -1.97 16 3 C -0.14 -2.26 8.69 37.16 0.32 -1.93 16 4 C 0.17 2.95 2.35 -67.93 -0.16 2.79 16 5 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 6 C 0.11 1.74 5.02 -4.04 -0.02 1.72 16 7 N -0.71 -10.99 5.35 -60.29 -0.32 -11.31 16 8 C 0.51 8.29 7.18 -10.99 -0.08 8.21 16 9 O -0.53 -10.62 16.51 -14.30 -0.24 -10.86 16 10 C 0.07 0.89 3.13 -27.88 -0.09 0.80 16 11 H 0.09 0.99 7.79 -51.93 -0.40 0.59 16 12 C -0.17 -1.78 9.48 37.16 0.35 -1.43 16 13 O -0.35 -4.97 9.51 -55.09 -0.52 -5.50 16 14 C 0.10 1.07 5.87 36.00 0.21 1.28 16 15 C -0.09 -0.97 5.51 -104.62 -0.58 -1.54 16 16 C -0.10 -0.97 9.70 -39.58 -0.38 -1.36 16 17 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 18 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 19 C -0.12 -1.17 10.05 -39.59 -0.40 -1.56 16 20 C -0.10 -1.03 9.70 -39.59 -0.38 -1.42 16 21 N -0.74 -15.14 3.48 -53.42 -0.19 -15.33 16 22 C -0.24 -5.89 8.05 -15.06 -0.12 -6.01 16 23 H 0.09 2.52 7.63 -52.49 -0.40 2.12 16 24 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 25 N -0.93 -27.27 13.97 55.49 0.78 -26.50 16 26 Si 0.88 20.67 27.74 -169.99 -4.72 15.96 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H -0.28 -6.13 6.51 56.52 0.37 -5.76 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.09 1.91 6.01 -51.93 -0.31 1.59 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.68 6.32 -51.93 -0.33 0.35 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.12 7.60 -51.93 -0.39 0.72 16 37 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 38 H 0.07 1.14 6.17 -51.93 -0.32 0.82 16 39 H 0.41 6.10 7.92 -40.82 -0.32 5.77 16 40 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 42 H 0.07 0.59 7.87 -51.93 -0.41 0.18 16 43 H 0.06 0.60 8.03 -51.93 -0.42 0.18 16 44 H 0.06 0.53 7.81 -51.93 -0.41 0.13 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 50 H 0.36 7.57 5.66 -40.82 -0.23 7.34 16 51 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 410.92 15.07 6.19 6.19 Total: -1.00 -31.53 410.92 -9.77 -41.30 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -8.60 Total: 13.44 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.16 Total: -7.39 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.27 Total: -53.14 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.76 Total: -16.36 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.72 Total: 15.96 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.53 -9.77 -41.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.599 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds