Wall clock time and date at job start Tue Mar 31 2020 18:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47172 * 2 1 4 4 C 1.52996 * 109.47309 * 120.00086 * 2 1 3 5 5 H 1.09000 * 109.47521 * 60.00160 * 4 2 1 6 6 C 1.53003 * 109.47332 * 180.02562 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21278 * 120.00286 * 359.97438 * 8 7 6 10 10 C 1.50699 * 119.99538 * 179.97438 * 8 7 6 11 11 H 1.09001 * 109.47451 * 304.99464 * 10 8 7 12 12 C 1.52999 * 109.47467 * 65.00159 * 10 8 7 13 13 O 1.42906 * 109.47126 * 184.99769 * 10 8 7 14 14 C 1.42900 * 114.00209 * 149.99732 * 13 10 8 15 15 C 1.50697 * 109.46770 * 179.97438 * 14 13 10 16 16 C 1.38239 * 120.00278 * 269.72580 * 15 14 13 17 17 C 1.38236 * 119.99960 * 179.76568 * 16 15 14 18 18 C 1.38235 * 119.99986 * 0.51612 * 17 16 15 19 19 C 1.38239 * 119.99790 * 359.73937 * 18 17 16 20 20 C 1.38225 * 120.00136 * 0.02562 * 19 18 17 21 21 N 1.46505 * 109.47130 * 300.00074 * 4 2 1 22 22 C 1.36931 * 119.99788 * 84.99932 * 21 4 2 23 23 H 1.08002 * 120.00438 * 0.02562 * 22 21 4 24 24 C 1.38817 * 119.99680 * 179.72358 * 22 21 4 25 25 N 1.31617 * 119.99873 * 180.27450 * 24 22 21 26 26 Si 1.86800 * 120.00209 * 0.27770 * 24 22 21 27 27 H 1.48498 * 109.47118 * 89.99559 * 26 24 22 28 28 H 1.48499 * 109.47134 * 210.00079 * 26 24 22 29 29 H 1.48507 * 109.46904 * 329.99901 * 26 24 22 30 30 H 1.08994 * 109.46999 * 59.99901 * 1 2 3 31 31 H 1.09000 * 109.46698 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47086 * 299.99896 * 1 2 3 33 33 H 1.08998 * 109.47497 * 240.00304 * 2 1 3 34 34 H 1.08998 * 109.47308 * 180.02562 * 3 2 1 35 35 H 1.08992 * 109.47225 * 300.00492 * 3 2 1 36 36 H 1.09003 * 109.47030 * 60.00070 * 3 2 1 37 37 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 38 38 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 39 39 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 40 40 H 1.09003 * 109.46731 * 299.99480 * 12 10 8 41 41 H 1.09001 * 109.47352 * 59.99245 * 12 10 8 42 42 H 1.08996 * 109.47552 * 179.97438 * 12 10 8 43 43 H 1.08992 * 109.47078 * 300.00263 * 14 13 10 44 44 H 1.08997 * 109.46593 * 60.00645 * 14 13 10 45 45 H 1.07999 * 120.00115 * 0.02562 * 16 15 14 46 46 H 1.08003 * 119.99868 * 180.23047 * 17 16 15 47 47 H 1.07998 * 120.00086 * 179.71811 * 18 17 16 48 48 H 1.08000 * 119.99477 * 179.97438 * 19 18 17 49 49 H 1.08004 * 119.99849 * 179.97438 * 20 19 18 50 50 H 0.97000 * 119.99792 * 264.99726 * 21 4 2 51 51 H 0.97000 * 120.00553 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6768 -1.7489 1.2492 6 6 3.5700 -0.7207 1.2495 7 7 4.0584 -1.3045 2.5013 8 6 5.3834 -1.4077 2.7249 9 8 6.1716 -1.0176 1.8897 10 6 5.8857 -2.0077 4.0128 11 1 5.4505 -1.4728 4.8569 12 6 5.4820 -3.4819 4.0802 13 8 7.3098 -1.9011 4.0645 14 6 7.8363 -1.7837 5.3878 15 6 9.3382 -1.6790 5.3233 16 6 10.1135 -2.8225 5.3709 17 6 11.4911 -2.7268 5.3069 18 6 12.0938 -1.4868 5.2060 19 6 11.3187 -0.3430 5.1636 20 6 9.9410 -0.4391 5.2228 21 7 1.5517 -0.0306 2.4454 22 6 0.3102 -0.3211 2.9447 23 1 -0.3089 -1.0596 2.4570 24 6 -0.1502 0.3291 4.0815 25 7 -1.3413 0.0460 4.5646 26 14 0.9207 1.6059 4.9256 27 1 0.6418 2.9454 4.3486 28 1 0.6202 1.6209 6.3797 29 1 2.3516 1.2662 4.7193 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 3.9337 -1.3099 0.4076 38 1 3.9331 0.3032 1.1601 39 1 3.4280 -1.6162 3.1695 40 1 4.3957 -3.5633 4.0409 41 1 5.9172 -4.0169 3.2361 42 1 5.8456 -3.9161 5.0115 43 1 7.4295 -0.8910 5.8627 44 1 7.5584 -2.6631 5.9686 45 1 9.6429 -3.7910 5.4539 46 1 12.0966 -3.6204 5.3403 47 1 13.1702 -1.4117 5.1605 48 1 11.7896 0.6258 5.0852 49 1 9.3355 0.4547 5.1901 50 1 2.1078 0.6323 2.8837 51 1 -1.6633 0.5006 5.3588 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753840391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:31 Heat of formation + Delta-G solvation = -71.136100 kcal Electronic energy + Delta-G solvation = -28916.293090 eV Core-core repulsion = 25008.013668 eV Total energy + Delta-G solvation = -3908.279421 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.12543 -40.22827 -39.15514 -38.29978 -35.38796 -34.75513 -33.52852 -32.52497 -31.83498 -31.80712 -29.54692 -27.82853 -27.18922 -25.79506 -24.71420 -23.50777 -23.34058 -22.29173 -21.42082 -20.45559 -19.61377 -18.45968 -18.14997 -17.56207 -17.00453 -16.79946 -16.55011 -16.27070 -16.14526 -15.89122 -15.48413 -15.27541 -14.88753 -14.67686 -14.59515 -14.33653 -14.28600 -14.24235 -13.85280 -13.53736 -13.43329 -13.31957 -13.05016 -12.98477 -12.86147 -12.76433 -12.46888 -12.44566 -12.10266 -12.04525 -11.94740 -11.85949 -11.78986 -11.38397 -11.25868 -11.07439 -10.89054 -10.51461 -10.05069 -9.84871 -9.78867 -9.24554 -7.92343 -5.23585 0.29478 0.47447 1.39315 1.43078 1.48904 1.56124 1.90345 2.53708 2.70409 3.15645 3.39618 3.58110 3.67392 3.84552 3.85590 3.88555 3.96367 4.06754 4.12314 4.25235 4.26459 4.29255 4.31708 4.35899 4.40019 4.61647 4.64635 4.69281 4.71321 4.73578 4.79496 4.94825 4.95762 5.04538 5.11353 5.12675 5.17096 5.21280 5.25846 5.30711 5.49654 5.52033 5.57640 5.58087 5.63886 5.81363 5.91218 6.00617 6.08233 6.30046 6.55666 7.16060 7.20294 7.90733 8.09790 9.28803 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.002564 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.626122 B =10916.394625 C =11648.592365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C -0.140 4.140 4 C 0.175 3.825 5 H 0.062 0.938 6 C 0.117 3.883 7 N -0.710 5.710 8 C 0.509 3.491 9 O -0.573 6.573 10 C 0.069 3.931 11 H 0.104 0.896 12 C -0.163 4.163 13 O -0.376 6.376 14 C 0.095 3.905 15 C -0.109 4.109 16 C -0.110 4.110 17 C -0.130 4.130 18 C -0.120 4.120 19 C -0.134 4.134 20 C -0.118 4.118 21 N -0.740 5.740 22 C -0.197 4.197 23 H 0.070 0.930 24 C -0.059 4.059 25 N -0.983 5.983 26 Si 0.936 3.064 27 H -0.293 1.293 28 H -0.304 1.304 29 H -0.252 1.252 30 H 0.050 0.950 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.413 0.587 40 H 0.084 0.916 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.147 0.853 47 H 0.146 0.854 48 H 0.140 0.860 49 H 0.121 0.879 50 H 0.362 0.638 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.734 -5.811 0.689 23.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.125 4.125 3 C -0.197 4.197 4 C 0.066 3.934 5 H 0.080 0.920 6 C -0.007 4.007 7 N -0.363 5.363 8 C 0.295 3.705 9 O -0.452 6.452 10 C 0.008 3.992 11 H 0.122 0.878 12 C -0.221 4.221 13 O -0.296 6.296 14 C 0.020 3.980 15 C -0.109 4.109 16 C -0.128 4.128 17 C -0.148 4.148 18 C -0.138 4.138 19 C -0.151 4.151 20 C -0.136 4.136 21 N -0.384 5.384 22 C -0.328 4.328 23 H 0.087 0.913 24 C -0.250 4.250 25 N -0.635 5.635 26 Si 0.766 3.234 27 H -0.220 1.220 28 H -0.231 1.231 29 H -0.177 1.177 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.250 0.750 40 H 0.103 0.897 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.154 0.846 46 H 0.164 0.836 47 H 0.164 0.836 48 H 0.158 0.842 49 H 0.139 0.861 50 H 0.195 0.805 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 23.217 -5.650 -0.051 23.894 hybrid contribution -0.559 1.040 1.208 1.690 sum 22.658 -4.610 1.157 23.151 Atomic orbital electron populations 1.21733 0.95678 1.00687 1.01134 1.21558 0.95932 0.96844 0.98171 1.21772 1.00427 0.96347 1.01154 1.20657 0.90067 0.95904 0.86734 0.92027 1.21711 0.94091 0.98631 0.86247 1.45938 1.06323 1.62484 1.21533 1.20877 0.82356 0.78337 0.88902 1.90668 1.56325 1.50216 1.48028 1.21998 0.83039 0.98684 0.95432 0.87834 1.22202 1.03044 0.92588 1.04219 1.88086 1.18748 1.94508 1.28209 1.21599 0.90355 1.02112 0.83974 1.19768 0.94344 0.94281 1.02493 1.21330 0.94489 0.98190 0.98756 1.21501 0.94606 0.98841 0.99860 1.21564 1.01224 0.92390 0.98606 1.21446 0.93432 1.00010 1.00246 1.21297 0.95841 0.97335 0.99155 1.42755 1.16844 1.48079 1.30683 1.18926 0.91833 1.16651 1.05381 0.91260 1.25230 0.97612 1.02370 0.99772 1.69841 1.20126 1.47621 1.25883 0.85697 0.80164 0.80097 0.77431 1.22033 1.23117 1.17696 0.93102 0.94176 0.93158 0.89962 0.92385 0.92346 0.94313 0.90274 0.91869 0.75036 0.89718 0.92060 0.89116 0.91824 0.90016 0.84626 0.83572 0.83581 0.84247 0.86118 0.80456 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 8.26 71.98 0.59 -4.01 16 2 C -0.10 -3.11 2.80 -10.79 -0.03 -3.14 16 3 C -0.14 -4.08 8.69 71.98 0.63 -3.46 16 4 C 0.17 5.63 2.35 44.99 0.11 5.74 16 5 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 6 C 0.12 3.46 5.02 86.38 0.43 3.89 16 7 N -0.71 -20.57 5.35 -463.05 -2.48 -23.04 16 8 C 0.51 15.84 7.18 87.66 0.63 16.47 16 9 O -0.57 -22.56 16.51 15.97 0.26 -22.30 16 10 C 0.07 1.69 3.13 29.85 0.09 1.78 16 11 H 0.10 2.14 7.79 -2.39 -0.02 2.12 16 12 C -0.16 -3.07 9.48 71.98 0.68 -2.39 16 13 O -0.38 -10.32 9.51 -129.99 -1.24 -11.56 16 14 C 0.10 1.97 5.87 71.23 0.42 2.38 16 15 C -0.11 -2.34 5.51 -19.87 -0.11 -2.45 16 16 C -0.11 -2.02 9.70 22.27 0.22 -1.81 16 17 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 18 C -0.12 -1.85 10.05 22.27 0.22 -1.62 16 19 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 20 C -0.12 -2.51 9.70 22.27 0.22 -2.30 16 21 N -0.74 -29.33 3.48 -322.93 -1.12 -30.45 16 22 C -0.20 -9.72 8.05 84.04 0.68 -9.04 16 23 H 0.07 3.77 7.63 -2.91 -0.02 3.75 16 24 C -0.06 -3.17 5.50 84.86 0.47 -2.71 16 25 N -0.98 -59.29 13.97 21.65 0.30 -58.99 16 26 Si 0.94 42.95 27.74 68.60 1.90 44.85 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 29 H -0.25 -10.30 6.51 99.48 0.65 -9.65 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 2.12 6.01 -2.39 -0.01 2.11 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.06 1.56 6.32 -2.39 -0.02 1.54 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.04 1.31 7.60 -2.39 -0.02 1.29 16 37 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.06 1.97 6.17 -2.39 -0.01 1.95 16 39 H 0.41 11.48 7.92 -92.71 -0.73 10.75 16 40 H 0.08 1.47 7.93 -2.39 -0.02 1.45 16 41 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.09 1.30 7.87 -2.39 -0.02 1.28 16 43 H 0.06 1.22 8.03 -2.39 -0.02 1.20 16 44 H 0.08 1.28 7.81 -2.39 -0.02 1.26 16 45 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 46 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 47 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 48 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 49 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 50 H 0.36 14.54 5.66 -92.71 -0.52 14.01 16 51 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -69.67 410.92 2.92 -66.75 By element: Atomic # 1 Polarization: 41.77 SS G_CDS: -0.40 Total: 41.37 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 5.69 Total: -6.62 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -3.30 Total: -112.49 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -0.97 Total: -33.86 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.90 Total: 44.85 kcal Total: -69.67 2.92 -66.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.391 kcal (2) G-P(sol) polarization free energy of solvation -69.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds