Wall clock time and date at job start Tue Mar 31 2020 18:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47057 * 119.99697 * 2 1 3 5 5 H 1.09005 * 109.47033 * 60.00029 * 4 2 1 6 6 C 1.52997 * 109.47264 * 299.99952 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21286 * 120.00177 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99902 * 180.02562 * 8 7 6 11 11 H 1.08998 * 109.47045 * 305.00110 * 10 8 7 12 12 C 1.53001 * 109.46965 * 65.00139 * 10 8 7 13 13 O 1.42901 * 109.47190 * 184.99965 * 10 8 7 14 14 C 1.42900 * 114.00127 * 149.99819 * 13 10 8 15 15 C 1.50696 * 109.47336 * 180.02562 * 14 13 10 16 16 C 1.38234 * 120.00334 * 269.73058 * 15 14 13 17 17 C 1.38233 * 120.00211 * 179.76487 * 16 15 14 18 18 C 1.38237 * 119.99952 * 0.50807 * 17 16 15 19 19 C 1.38237 * 119.99702 * 359.74461 * 18 17 16 20 20 C 1.38234 * 120.00185 * 359.97438 * 19 18 17 21 21 N 1.46498 * 109.46890 * 179.97438 * 4 2 1 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 4 2 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22 28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22 29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22 30 30 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47639 * 300.00185 * 1 2 3 32 32 H 1.09004 * 109.47252 * 59.99968 * 1 2 3 33 33 H 1.08994 * 109.47535 * 240.00023 * 2 1 3 34 34 H 1.08994 * 109.47076 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46954 * 300.00277 * 3 2 1 36 36 H 1.08997 * 109.46518 * 59.99948 * 3 2 1 37 37 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 38 38 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 39 39 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 40 40 H 1.08997 * 109.47126 * 300.00017 * 12 10 8 41 41 H 1.08998 * 109.47263 * 60.00104 * 12 10 8 42 42 H 1.08999 * 109.46744 * 179.97438 * 12 10 8 43 43 H 1.08995 * 109.47123 * 300.00403 * 14 13 10 44 44 H 1.08996 * 109.46817 * 60.00456 * 14 13 10 45 45 H 1.07998 * 119.99450 * 359.97438 * 16 15 14 46 46 H 1.07992 * 120.00200 * 180.23082 * 17 16 15 47 47 H 1.08001 * 120.00299 * 179.72583 * 18 17 16 48 48 H 1.08005 * 119.99701 * 179.97438 * 19 18 17 49 49 H 1.08005 * 119.99916 * 179.97438 * 20 19 18 50 50 H 0.97004 * 119.99747 * 95.00774 * 21 4 2 51 51 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 1.5300 0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8052 -0.1444 4.9152 9 8 1.0433 0.7925 5.0286 10 6 2.4065 -0.7793 6.1425 11 1 2.1935 -1.8483 6.1399 12 6 3.9208 -0.5610 6.1397 13 8 1.8415 -0.1839 7.3123 14 6 1.7744 -1.0625 8.4372 15 6 1.1651 -0.3346 9.6076 16 6 1.9754 0.3526 10.4921 17 6 1.4160 1.0243 11.5629 18 6 0.0473 1.0003 11.7553 19 6 -0.7625 0.3088 10.8737 20 6 -0.2036 -0.3582 9.7996 21 7 3.5049 -0.7217 1.2489 22 6 4.1891 -1.6935 0.5688 23 1 3.6488 -2.4594 0.0322 24 6 5.5772 -1.6943 0.5689 25 7 6.2358 -0.7578 1.2183 26 14 6.5106 -3.0195 -0.3595 27 1 7.9708 -2.7942 -0.2092 28 1 6.1561 -4.3525 0.1909 29 1 6.1470 -2.9654 -1.7983 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.8183 1.0503 2.4549 38 1 0.4436 -0.0769 2.5444 39 1 2.7231 -1.3670 3.6010 40 1 4.3517 -1.0152 5.2475 41 1 4.1338 0.5080 6.1423 42 1 4.3556 -1.0199 7.0277 43 1 1.1592 -1.9267 8.1871 44 1 2.7789 -1.3951 8.6988 45 1 3.0451 0.3673 10.3445 46 1 2.0486 1.5642 12.2517 47 1 -0.3894 1.5214 12.5944 48 1 -1.8318 0.2896 11.0243 49 1 -0.8363 -0.8988 9.1111 50 1 3.9902 -0.0337 1.7306 51 1 5.7512 -0.0693 1.7001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753840392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:35 Heat of formation + Delta-G solvation = -57.513356 kcal Electronic energy + Delta-G solvation = -28825.911422 eV Core-core repulsion = 24918.222727 eV Total energy + Delta-G solvation = -3907.688695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.93400 -39.37242 -37.87653 -37.03637 -33.87901 -33.59450 -32.62643 -31.11365 -30.95349 -30.10936 -27.29726 -26.67685 -26.35539 -24.30428 -23.28303 -22.79183 -22.52180 -21.54182 -20.12616 -18.84421 -17.51130 -17.39217 -17.07827 -16.66702 -16.00353 -15.68685 -15.45777 -15.16889 -14.65262 -14.50940 -14.06346 -13.87351 -13.63559 -13.61410 -13.57793 -13.48113 -13.17652 -12.96669 -12.75699 -12.55658 -12.30264 -12.14024 -11.95382 -11.53944 -11.44931 -11.32666 -11.23236 -11.06826 -10.97982 -10.82744 -10.57755 -10.29421 -10.02978 -9.98673 -9.92360 -9.34642 -9.23243 -9.12270 -9.04125 -8.96349 -8.66881 -7.13063 -6.16822 -3.18747 1.04104 1.19994 2.85487 3.02068 3.46401 3.49096 3.58555 3.66825 4.08320 4.58529 4.59131 4.61769 4.78009 4.82948 4.91243 4.95627 5.00244 5.11395 5.13474 5.27142 5.29303 5.31749 5.43079 5.44017 5.58489 5.67034 5.67773 5.70484 5.74529 5.75559 5.82464 5.87195 6.02313 6.07688 6.17668 6.22514 6.25287 6.28236 6.29619 6.36694 6.38761 6.54291 6.64347 6.76257 6.78622 6.92432 6.93795 7.02296 7.73803 7.85597 8.51005 8.67788 9.12443 9.99118 10.14122 11.30453 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.002454 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.782489 B =11409.131100 C =12833.449064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.140 4.140 4 C 0.176 3.824 5 H 0.054 0.946 6 C 0.111 3.889 7 N -0.712 5.712 8 C 0.511 3.489 9 O -0.532 6.532 10 C 0.072 3.928 11 H 0.084 0.916 12 C -0.171 4.171 13 O -0.350 6.350 14 C 0.099 3.901 15 C -0.087 4.087 16 C -0.097 4.097 17 C -0.125 4.125 18 C -0.116 4.116 19 C -0.125 4.125 20 C -0.096 4.096 21 N -0.730 5.730 22 C -0.332 4.332 23 H 0.064 0.936 24 C -0.041 4.041 25 N -0.941 5.941 26 Si 1.077 2.923 27 H -0.286 1.286 28 H -0.296 1.296 29 H -0.296 1.296 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.040 0.960 36 H 0.046 0.954 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.408 0.592 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.123 0.877 50 H 0.368 0.632 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.090 -0.947 16.023 19.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.197 4.197 4 C 0.065 3.935 5 H 0.072 0.928 6 C -0.013 4.013 7 N -0.366 5.366 8 C 0.296 3.704 9 O -0.409 6.409 10 C 0.010 3.990 11 H 0.102 0.898 12 C -0.229 4.229 13 O -0.268 6.268 14 C 0.022 3.978 15 C -0.087 4.087 16 C -0.116 4.116 17 C -0.143 4.143 18 C -0.134 4.134 19 C -0.143 4.143 20 C -0.114 4.114 21 N -0.373 5.373 22 C -0.463 4.463 23 H 0.082 0.918 24 C -0.239 4.239 25 N -0.586 5.586 26 Si 0.908 3.092 27 H -0.211 1.211 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.245 0.755 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.141 0.859 50 H 0.202 0.798 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.264 -0.829 15.595 18.688 hybrid contribution -1.031 0.191 0.292 1.089 sum -11.295 -0.638 15.886 19.503 Atomic orbital electron populations 1.21921 0.96612 1.01023 1.01095 1.21702 0.93695 0.97056 1.00788 1.21763 1.02271 0.95740 0.99970 1.20444 0.85798 0.96738 0.90478 0.92797 1.21834 0.97399 0.97869 0.84197 1.45940 1.48880 1.36750 1.05017 1.20277 0.81708 0.84083 0.84381 1.90689 1.35647 1.27915 1.86604 1.21914 0.94179 0.97393 0.85478 0.89799 1.22236 0.93051 1.04027 1.03547 1.88128 1.82940 1.37348 1.18406 1.21420 0.99603 0.91841 0.84912 1.19579 0.93851 0.99724 0.95523 1.21090 0.99951 0.96147 0.94367 1.21145 0.95244 0.99768 0.98135 1.21195 0.93903 0.99013 0.99322 1.21149 0.99898 0.98043 0.95169 1.21097 0.94250 0.98817 0.97256 1.42450 0.99410 1.33360 1.62097 1.19999 0.91702 1.06250 1.28355 0.91763 1.25702 0.93360 1.03160 1.01711 1.70897 1.37333 1.15364 1.34974 0.83275 0.76349 0.74338 0.75219 1.21132 1.22323 1.22349 0.93179 0.92909 0.93428 0.90891 0.91747 0.94069 0.93517 0.91455 0.91550 0.75533 0.90046 0.91102 0.91471 0.92327 0.92140 0.85847 0.85924 0.86081 0.85934 0.85899 0.79803 0.93338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.84 37.15 0.33 -1.75 16 2 C -0.11 -1.88 2.91 -90.62 -0.26 -2.14 16 3 C -0.14 -2.38 8.69 37.16 0.32 -2.06 16 4 C 0.18 3.21 2.27 -67.93 -0.15 3.06 16 5 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 6 C 0.11 1.89 4.51 -4.04 -0.02 1.87 16 7 N -0.71 -11.71 5.35 -60.29 -0.32 -12.03 16 8 C 0.51 8.73 7.18 -10.99 -0.08 8.65 16 9 O -0.53 -11.09 16.51 -14.31 -0.24 -11.33 16 10 C 0.07 0.99 3.13 -27.88 -0.09 0.90 16 11 H 0.08 0.94 7.79 -51.93 -0.40 0.53 16 12 C -0.17 -2.20 9.48 37.16 0.35 -1.85 16 13 O -0.35 -5.17 9.51 -55.09 -0.52 -5.69 16 14 C 0.10 1.09 5.87 36.00 0.21 1.30 16 15 C -0.09 -0.98 5.51 -104.63 -0.58 -1.56 16 16 C -0.10 -1.01 9.70 -39.58 -0.38 -1.39 16 17 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 18 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 19 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 20 C -0.10 -1.02 9.70 -39.58 -0.38 -1.41 16 21 N -0.73 -16.26 3.79 -53.43 -0.20 -16.46 16 22 C -0.33 -8.49 9.93 -15.06 -0.15 -8.64 16 23 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 24 C -0.04 -1.11 5.50 -17.43 -0.10 -1.21 16 25 N -0.94 -27.31 13.70 55.49 0.76 -26.55 16 26 Si 1.08 24.62 29.92 -169.99 -5.09 19.53 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.30 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.30 -6.57 7.11 56.52 0.40 -6.17 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.72 6.54 -51.93 -0.34 0.38 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.06 1.27 7.60 -51.93 -0.39 0.87 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.75 6.32 -51.93 -0.33 0.43 16 37 H 0.07 1.23 6.17 -51.93 -0.32 0.91 16 38 H 0.07 1.08 6.71 -51.93 -0.35 0.73 16 39 H 0.41 6.63 7.92 -40.82 -0.32 6.30 16 40 H 0.08 1.10 7.92 -51.93 -0.41 0.69 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.71 7.87 -51.93 -0.41 0.30 16 43 H 0.06 0.56 8.03 -51.93 -0.42 0.14 16 44 H 0.06 0.56 7.81 -51.93 -0.41 0.15 16 45 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 49 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 50 H 0.37 8.72 6.63 -40.82 -0.27 8.45 16 51 H 0.26 7.32 6.77 -40.82 -0.28 7.04 16 LS Contribution 414.47 15.07 6.25 6.25 Total: -1.00 -31.94 414.47 -10.04 -41.98 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: -8.50 Total: 15.06 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -2.17 Total: -10.76 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.23 Total: -55.03 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.76 Total: -17.02 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.09 Total: 19.53 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -31.94 -10.04 -41.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.535 kcal (2) G-P(sol) polarization free energy of solvation -31.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds