Wall clock time and date at job start Tue Mar 31 2020 18:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53009 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47057 * 119.99697 * 2 1 3 5 5 H 1.09005 * 109.47033 * 60.00029 * 4 2 1 6 6 C 1.52997 * 109.47264 * 299.99952 * 4 2 1 7 7 N 1.46505 * 109.46985 * 184.99674 * 6 4 2 8 8 C 1.34774 * 119.99861 * 180.02562 * 7 6 4 9 9 O 1.21286 * 120.00177 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99902 * 180.02562 * 8 7 6 11 11 H 1.08998 * 109.47045 * 305.00110 * 10 8 7 12 12 C 1.53001 * 109.46965 * 65.00139 * 10 8 7 13 13 O 1.42901 * 109.47190 * 184.99965 * 10 8 7 14 14 C 1.42900 * 114.00127 * 149.99819 * 13 10 8 15 15 C 1.50696 * 109.47336 * 180.02562 * 14 13 10 16 16 C 1.38234 * 120.00334 * 269.73058 * 15 14 13 17 17 C 1.38233 * 120.00211 * 179.76487 * 16 15 14 18 18 C 1.38237 * 119.99952 * 0.50807 * 17 16 15 19 19 C 1.38237 * 119.99702 * 359.74461 * 18 17 16 20 20 C 1.38234 * 120.00185 * 359.97438 * 19 18 17 21 21 N 1.46498 * 109.46890 * 179.97438 * 4 2 1 22 22 C 1.36935 * 120.00239 * 275.00034 * 21 4 2 23 23 H 1.08004 * 120.00069 * 0.02562 * 22 21 4 24 24 C 1.38811 * 120.00368 * 180.02562 * 22 21 4 25 25 N 1.31624 * 119.99540 * 359.72375 * 24 22 21 26 26 Si 1.86800 * 120.00451 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47364 * 179.72253 * 26 24 22 28 28 H 1.48508 * 109.46883 * 299.72375 * 26 24 22 29 29 H 1.48497 * 109.46870 * 59.72186 * 26 24 22 30 30 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47639 * 300.00185 * 1 2 3 32 32 H 1.09004 * 109.47252 * 59.99968 * 1 2 3 33 33 H 1.08994 * 109.47535 * 240.00023 * 2 1 3 34 34 H 1.08994 * 109.47076 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46954 * 300.00277 * 3 2 1 36 36 H 1.08997 * 109.46518 * 59.99948 * 3 2 1 37 37 H 1.08996 * 109.47726 * 304.99907 * 6 4 2 38 38 H 1.09001 * 109.46766 * 65.00647 * 6 4 2 39 39 H 0.96994 * 120.00104 * 0.02562 * 7 6 4 40 40 H 1.08997 * 109.47126 * 300.00017 * 12 10 8 41 41 H 1.08998 * 109.47263 * 60.00104 * 12 10 8 42 42 H 1.08999 * 109.46744 * 179.97438 * 12 10 8 43 43 H 1.08995 * 109.47123 * 300.00403 * 14 13 10 44 44 H 1.08996 * 109.46817 * 60.00456 * 14 13 10 45 45 H 1.07998 * 119.99450 * 359.97438 * 16 15 14 46 46 H 1.07992 * 120.00200 * 180.23082 * 17 16 15 47 47 H 1.08001 * 120.00299 * 179.72583 * 18 17 16 48 48 H 1.08005 * 119.99701 * 179.97438 * 19 18 17 49 49 H 1.08005 * 119.99916 * 179.97438 * 20 19 18 50 50 H 0.97004 * 119.99747 * 95.00774 * 21 4 2 51 51 H 0.97000 * 120.00481 * 0.27542 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -1.7489 1.2493 6 6 1.5300 0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8052 -0.1444 4.9152 9 8 1.0433 0.7925 5.0286 10 6 2.4065 -0.7793 6.1425 11 1 2.1935 -1.8483 6.1399 12 6 3.9208 -0.5610 6.1397 13 8 1.8415 -0.1839 7.3123 14 6 1.7744 -1.0625 8.4372 15 6 1.1651 -0.3346 9.6076 16 6 1.9754 0.3526 10.4921 17 6 1.4160 1.0243 11.5629 18 6 0.0473 1.0003 11.7553 19 6 -0.7625 0.3088 10.8737 20 6 -0.2036 -0.3582 9.7996 21 7 3.5049 -0.7217 1.2489 22 6 4.1891 -1.6935 0.5688 23 1 3.6488 -2.4594 0.0322 24 6 5.5772 -1.6943 0.5689 25 7 6.2358 -0.7578 1.2183 26 14 6.5106 -3.0195 -0.3595 27 1 7.9708 -2.7942 -0.2092 28 1 6.1561 -4.3525 0.1909 29 1 6.1470 -2.9654 -1.7983 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.8183 1.0503 2.4549 38 1 0.4436 -0.0769 2.5444 39 1 2.7231 -1.3670 3.6010 40 1 4.3517 -1.0152 5.2475 41 1 4.1338 0.5080 6.1423 42 1 4.3556 -1.0199 7.0277 43 1 1.1592 -1.9267 8.1871 44 1 2.7789 -1.3951 8.6988 45 1 3.0451 0.3673 10.3445 46 1 2.0486 1.5642 12.2517 47 1 -0.3894 1.5214 12.5944 48 1 -1.8318 0.2896 11.0243 49 1 -0.8363 -0.8988 9.1111 50 1 3.9902 -0.0337 1.7306 51 1 5.7512 -0.0693 1.7001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753840392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:34 Heat of formation + Delta-G solvation = -75.417726 kcal Electronic energy + Delta-G solvation = -28826.687814 eV Core-core repulsion = 24918.222727 eV Total energy + Delta-G solvation = -3908.465087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.17009 -40.23605 -39.17527 -38.30073 -35.48914 -35.23817 -33.52033 -32.17070 -31.81664 -31.65933 -28.80897 -27.99163 -27.18840 -25.80813 -24.91475 -23.94124 -23.50023 -22.29068 -21.45620 -20.27629 -19.35429 -18.52226 -18.28593 -17.57017 -17.23052 -16.78773 -16.50813 -16.37717 -16.01280 -15.78557 -15.53862 -15.37836 -15.05782 -14.96278 -14.60189 -14.32467 -14.28776 -14.05750 -13.85075 -13.53764 -13.45560 -13.35571 -13.06896 -12.93149 -12.76754 -12.70156 -12.49978 -12.43491 -12.12439 -11.94750 -11.90592 -11.86254 -11.71203 -11.44645 -11.12827 -11.07772 -10.85539 -10.54971 -10.08960 -9.84570 -9.78782 -9.05804 -8.28752 -5.24372 0.29508 0.47702 1.50912 1.62619 1.70518 1.86466 1.88165 2.69110 2.74903 3.14920 3.46881 3.59551 3.72114 3.80724 3.84342 3.85274 3.94206 4.02442 4.12360 4.14663 4.24294 4.26660 4.31884 4.35487 4.36317 4.42221 4.60566 4.61484 4.64192 4.71426 4.74818 4.79885 4.85060 5.01823 5.04624 5.07759 5.12252 5.13337 5.13928 5.22822 5.38267 5.49763 5.52137 5.57246 5.58233 5.64106 5.70746 5.99664 6.08336 6.50914 6.57583 7.13565 7.16061 8.04447 8.17098 9.21780 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.002454 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.782489 B =11409.131100 C =12833.449064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.134 4.134 4 C 0.178 3.822 5 H 0.056 0.944 6 C 0.120 3.880 7 N -0.708 5.708 8 C 0.508 3.492 9 O -0.574 6.574 10 C 0.078 3.922 11 H 0.115 0.885 12 C -0.164 4.164 13 O -0.377 6.377 14 C 0.095 3.905 15 C -0.109 4.109 16 C -0.113 4.113 17 C -0.132 4.132 18 C -0.120 4.120 19 C -0.132 4.132 20 C -0.115 4.115 21 N -0.735 5.735 22 C -0.318 4.318 23 H 0.067 0.933 24 C -0.099 4.099 25 N -0.975 5.975 26 Si 1.121 2.879 27 H -0.300 1.300 28 H -0.276 1.276 29 H -0.286 1.286 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.030 0.970 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.411 0.589 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.131 0.869 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.142 0.858 49 H 0.126 0.874 50 H 0.359 0.641 51 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.385 -1.960 16.743 20.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.191 4.191 4 C 0.069 3.931 5 H 0.074 0.926 6 C -0.004 4.004 7 N -0.360 5.360 8 C 0.294 3.706 9 O -0.453 6.453 10 C 0.017 3.983 11 H 0.133 0.867 12 C -0.222 4.222 13 O -0.296 6.296 14 C 0.019 3.981 15 C -0.109 4.109 16 C -0.131 4.131 17 C -0.150 4.150 18 C -0.138 4.138 19 C -0.150 4.150 20 C -0.133 4.133 21 N -0.377 5.377 22 C -0.450 4.450 23 H 0.085 0.915 24 C -0.290 4.290 25 N -0.623 5.623 26 Si 0.948 3.052 27 H -0.226 1.226 28 H -0.202 1.202 29 H -0.212 1.212 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.247 0.753 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.149 0.851 46 H 0.162 0.838 47 H 0.164 0.836 48 H 0.160 0.840 49 H 0.144 0.856 50 H 0.192 0.808 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.608 -1.868 16.308 20.105 hybrid contribution -0.732 0.548 0.105 0.920 sum -12.340 -1.320 16.413 20.577 Atomic orbital electron populations 1.21838 0.93670 1.02110 1.02188 1.21600 0.96104 0.96361 0.98804 1.21694 0.99996 0.96218 1.01222 1.20578 0.83536 0.97197 0.91805 0.92648 1.21699 0.98026 0.96874 0.83818 1.45922 1.48590 1.36538 1.04978 1.20934 0.80914 0.83438 0.85285 1.90661 1.37658 1.29808 1.87202 1.21897 0.94016 0.98474 0.83940 0.86747 1.22179 0.92615 1.02925 1.04433 1.88098 1.83137 1.39068 1.19322 1.21627 1.00978 0.91697 0.83777 1.19773 0.94392 1.00737 0.96038 1.21326 1.00502 0.96434 0.94813 1.21482 0.95920 0.99460 0.98094 1.21564 0.93870 0.98565 0.99787 1.21465 1.01143 0.97617 0.94798 1.21310 0.94349 0.99563 0.98081 1.42519 1.01012 1.32484 1.61693 1.20254 0.91846 1.06062 1.26838 0.91546 1.26874 0.94903 1.04541 1.02724 1.70997 1.37584 1.16554 1.37164 0.82682 0.74422 0.73269 0.74852 1.22630 1.20220 1.21226 0.92131 0.92303 0.91867 0.92892 0.95116 0.92228 0.92852 0.92815 0.90191 0.75274 0.90877 0.92997 0.88769 0.91024 0.90361 0.85070 0.83827 0.83583 0.83995 0.85626 0.80834 0.94551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 8.84 71.98 0.64 -2.95 16 2 C -0.11 -3.54 2.91 -10.79 -0.03 -3.57 16 3 C -0.13 -4.50 8.69 71.99 0.63 -3.88 16 4 C 0.18 6.39 2.27 44.99 0.10 6.50 16 5 H 0.06 2.00 8.08 -2.38 -0.02 1.98 16 6 C 0.12 4.02 4.51 86.38 0.39 4.41 16 7 N -0.71 -23.10 5.35 -463.06 -2.48 -25.58 16 8 C 0.51 17.30 7.18 87.66 0.63 17.93 16 9 O -0.57 -24.17 16.51 15.94 0.26 -23.90 16 10 C 0.08 2.07 3.13 29.85 0.09 2.16 16 11 H 0.11 2.32 7.79 -2.39 -0.02 2.30 16 12 C -0.16 -4.12 9.48 71.98 0.68 -3.44 16 13 O -0.38 -10.94 9.51 -129.99 -1.24 -12.17 16 14 C 0.09 1.99 5.87 71.23 0.42 2.41 16 15 C -0.11 -2.41 5.51 -19.87 -0.11 -2.52 16 16 C -0.11 -2.24 9.70 22.27 0.22 -2.03 16 17 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 18 C -0.12 -1.91 10.05 22.27 0.22 -1.68 16 19 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 20 C -0.11 -2.39 9.70 22.27 0.22 -2.17 16 21 N -0.74 -33.01 3.79 -322.94 -1.23 -34.24 16 22 C -0.32 -16.24 9.93 84.03 0.83 -15.40 16 23 H 0.07 3.32 7.83 -2.91 -0.02 3.30 16 24 C -0.10 -5.34 5.50 84.86 0.47 -4.87 16 25 N -0.97 -57.73 13.70 21.65 0.30 -57.43 16 26 Si 1.12 49.52 29.92 68.60 2.05 51.57 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.28 -11.19 7.11 99.48 0.71 -10.49 16 29 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.45 6.54 -2.39 -0.02 1.43 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.03 1.22 7.60 -2.39 -0.02 1.20 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.05 1.70 6.32 -2.39 -0.02 1.69 16 37 H 0.05 1.97 6.17 -2.39 -0.01 1.96 16 38 H 0.08 2.50 6.71 -2.39 -0.02 2.48 16 39 H 0.41 13.19 7.92 -92.71 -0.73 12.45 16 40 H 0.07 1.96 7.92 -2.39 -0.02 1.94 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.09 1.84 7.87 -2.39 -0.02 1.82 16 43 H 0.07 1.27 8.03 -2.39 -0.02 1.25 16 44 H 0.08 1.31 7.81 -2.39 -0.02 1.30 16 45 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 46 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 47 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 48 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 49 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 50 H 0.36 17.50 6.63 -92.71 -0.61 16.89 16 51 H 0.24 14.46 6.77 -92.71 -0.63 13.83 16 Total: -1.00 -69.77 414.47 3.23 -66.54 By element: Atomic # 1 Polarization: 48.69 SS G_CDS: -0.29 Total: 48.40 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 5.84 Total: -13.20 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -3.41 Total: -117.24 kcal Atomic # 8 Polarization: -35.10 SS G_CDS: -0.97 Total: -36.08 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.05 Total: 51.57 kcal Total: -69.77 3.23 -66.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753840392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.876 kcal (2) G-P(sol) polarization free energy of solvation -69.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds