Wall clock time and date at job start Tue Mar 31 2020 18:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47354 * 2 1 4 4 C 1.46497 * 119.99926 * 278.38684 * 3 2 1 5 5 C 1.53003 * 109.47295 * 269.99897 * 4 3 2 6 6 N 1.46497 * 109.47295 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99889 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00293 * 0.02562 * 7 6 5 9 9 C 1.38814 * 119.99614 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00514 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99649 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47330 * 89.99706 * 11 9 7 13 13 H 1.48506 * 109.46786 * 209.99607 * 11 9 7 14 14 H 1.48502 * 109.47173 * 329.99499 * 11 9 7 15 15 C 1.34775 * 119.99944 * 98.38703 * 3 2 1 16 16 O 1.21590 * 120.00068 * 186.49421 * 15 3 2 17 17 C 1.47600 * 120.00165 * 6.49091 * 15 3 2 18 18 C 1.39736 * 120.09108 * 150.36713 * 17 15 3 19 19 C 1.37697 * 119.91343 * 180.29954 * 18 17 15 20 20 C 1.38999 * 120.08943 * 359.44648 * 19 18 17 21 21 O 1.35708 * 119.91396 * 180.25629 * 20 19 18 22 22 C 1.42901 * 117.00031 * 0.29723 * 21 20 19 23 23 C 1.53001 * 109.47387 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.46682 * 64.99995 * 23 22 21 25 25 C 1.52998 * 109.47486 * 184.99810 * 23 22 21 26 26 C 1.38992 * 120.17342 * 0.55450 * 20 19 18 27 27 C 1.37705 * 120.08971 * 359.72304 * 26 20 19 28 28 H 1.08998 * 109.47022 * 59.99801 * 1 2 3 29 29 H 1.09000 * 109.46991 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46762 * 300.00281 * 1 2 3 31 31 H 1.08999 * 109.47641 * 239.99758 * 2 1 3 32 32 H 1.09007 * 109.46950 * 119.99960 * 2 1 3 33 33 H 1.08998 * 109.47394 * 29.99785 * 4 3 2 34 34 H 1.09000 * 109.47261 * 150.00071 * 4 3 2 35 35 H 1.08998 * 109.46808 * 300.00246 * 5 4 3 36 36 H 1.09000 * 109.46824 * 59.99906 * 5 4 3 37 37 H 0.97000 * 119.99839 * 0.02562 * 6 5 4 38 38 H 0.96993 * 120.00204 * 180.02562 * 10 9 7 39 39 H 1.07999 * 120.03818 * 0.02562 * 18 17 15 40 40 H 1.08007 * 119.95561 * 179.70280 * 19 18 17 41 41 H 1.09002 * 109.47115 * 300.00186 * 22 21 20 42 42 H 1.09002 * 109.47339 * 59.99743 * 22 21 20 43 43 H 1.08996 * 109.46919 * 305.00504 * 23 22 21 44 44 H 1.09001 * 109.47337 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.47097 * 300.00087 * 24 23 22 46 46 H 1.08998 * 109.47083 * 60.00031 * 24 23 22 47 47 H 1.09000 * 109.46771 * 59.99946 * 25 23 22 48 48 H 1.08995 * 109.47176 * 179.97438 * 25 23 22 49 49 H 1.08998 * 109.47136 * 300.00494 * 25 23 22 50 50 H 1.07999 * 119.95873 * 179.70149 * 26 20 19 51 51 H 1.08004 * 120.04534 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0881 2.1335 -1.2551 5 6 3.4579 1.9197 -1.9025 6 7 3.5274 2.6714 -3.1580 7 6 4.6658 2.6314 -3.9178 8 1 5.5123 2.0453 -3.5919 9 6 4.7318 3.3442 -5.1072 10 7 3.7000 4.0581 -5.5048 11 14 6.2846 3.2890 -6.1441 12 1 6.1945 2.1656 -7.1112 13 1 6.4316 4.5683 -6.8838 14 1 7.4623 3.0893 -5.2618 15 6 2.4036 1.9598 1.1547 16 8 2.6963 3.1397 1.1754 17 6 2.4699 1.1611 2.3942 18 6 3.3898 1.4922 3.3926 19 6 3.4528 0.7409 4.5448 20 6 2.5950 -0.3387 4.7205 21 8 2.6566 -1.0736 5.8597 22 6 3.6213 -0.6767 6.8364 23 6 3.5425 -1.6155 8.0420 24 6 3.9537 -3.0267 7.6171 25 6 4.4863 -1.1178 9.1385 26 6 1.6786 -0.6714 3.7298 27 6 1.6133 0.0716 2.5722 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.3081 1.7845 -1.9317 34 1 1.9443 3.1946 -1.0513 35 1 4.2379 2.2686 -1.2259 36 1 3.6017 0.8586 -2.1064 37 1 2.7669 3.1976 -3.4509 38 1 3.7460 4.5558 -6.3360 39 1 4.0535 2.3336 3.2587 40 1 4.1668 0.9933 5.3149 41 1 4.6198 -0.7259 6.4018 42 1 3.4147 0.3443 7.1573 43 1 2.5212 -1.6337 8.4222 44 1 3.8971 -3.6957 8.4758 45 1 3.2813 -3.3813 6.8359 46 1 4.9750 -3.0086 7.2368 47 1 4.1934 -0.1125 9.4412 48 1 4.4298 -1.7864 9.9975 49 1 5.5076 -1.0997 8.7582 50 1 1.0171 -1.5138 3.8679 51 1 0.9012 -0.1878 1.8027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754079902.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:41 Heat of formation + Delta-G solvation = -17.209892 kcal Electronic energy + Delta-G solvation = -28319.536166 eV Core-core repulsion = 24413.595160 eV Total energy + Delta-G solvation = -3905.941005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.90503 -39.84395 -37.64733 -36.35299 -35.67912 -34.61672 -32.14850 -31.26888 -30.39187 -30.34784 -27.69212 -27.61714 -27.00836 -24.18307 -23.71653 -22.98870 -22.57957 -21.39511 -20.68045 -19.47208 -18.53804 -17.42895 -17.11486 -16.65101 -16.35364 -15.98723 -15.42439 -15.25399 -14.80378 -14.52569 -14.35866 -14.25143 -14.03416 -13.68864 -13.51522 -13.29157 -13.15575 -13.01265 -12.91231 -12.79405 -12.64836 -12.55659 -12.41050 -11.86701 -11.77150 -11.61204 -11.35892 -11.24835 -11.19100 -10.99989 -10.95439 -10.89362 -10.78584 -10.63315 -10.08756 -9.78129 -9.63866 -9.23188 -8.84201 -8.56323 -8.38612 -6.89879 -5.73037 -3.02126 0.80249 1.07496 2.74329 2.83366 3.08016 3.46371 3.51325 3.53622 3.64149 4.21098 4.28545 4.45138 4.51280 4.53420 4.58135 4.64706 4.78316 4.84096 4.90520 5.00628 5.04044 5.06625 5.14496 5.17429 5.27487 5.31170 5.34435 5.40533 5.51526 5.54994 5.57550 5.64040 5.67997 5.72431 5.74577 5.81304 5.85279 5.90345 6.03062 6.06617 6.08997 6.17276 6.20257 6.37299 6.61300 6.79153 6.94960 7.04286 7.54632 7.73373 8.32514 8.45550 9.56344 10.12792 10.48073 11.49858 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018203 B = 0.001985 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.839535 B =14105.597727 C =14826.403850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.070 3.930 3 N -0.600 5.600 4 C 0.107 3.893 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.558 3.442 16 O -0.532 6.532 17 C -0.165 4.165 18 C -0.021 4.021 19 C -0.218 4.218 20 C 0.150 3.850 21 O -0.311 6.311 22 C 0.060 3.940 23 C -0.095 4.095 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.162 4.162 27 C -0.080 4.080 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.021 0.979 36 H 0.018 0.982 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.136 0.864 40 H 0.132 0.868 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.055 0.945 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.059 0.941 50 H 0.136 0.864 51 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.563 -15.319 28.784 33.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.053 4.053 3 N -0.332 5.332 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.347 3.653 16 O -0.409 6.409 17 C -0.168 4.168 18 C -0.039 4.039 19 C -0.237 4.237 20 C 0.104 3.896 21 O -0.224 6.224 22 C -0.015 4.015 23 C -0.113 4.113 24 C -0.205 4.205 25 C -0.205 4.205 26 C -0.181 4.181 27 C -0.098 4.098 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.039 0.961 36 H 0.036 0.964 37 H 0.218 0.782 38 H 0.065 0.935 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.078 0.922 50 H 0.153 0.847 51 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -5.342 -14.884 28.785 32.843 hybrid contribution 0.816 0.313 -0.747 1.150 sum -4.527 -14.571 28.037 31.920 Atomic orbital electron populations 1.22313 0.95794 1.02656 1.03127 1.22439 0.94399 0.83461 1.04963 1.47756 1.64053 1.13992 1.07422 1.21708 0.99032 0.97539 0.83204 1.20904 0.93791 0.95145 0.88709 1.42204 1.17094 1.57273 1.20891 1.19211 0.92890 1.24048 1.00736 0.91208 1.24749 0.97834 1.00053 0.98391 1.69660 1.29742 1.34971 1.23806 0.86162 0.82667 0.76908 0.80289 1.21727 1.21723 1.20773 1.18220 0.77126 0.86865 0.83099 1.90810 1.48959 1.15458 1.85715 1.19873 1.01519 0.99018 0.96413 1.21035 0.95272 0.96972 0.90668 1.21192 1.03353 0.98604 1.00531 1.19263 0.94052 0.90124 0.86175 1.86006 1.57042 1.53478 1.25857 1.22989 0.91604 0.98739 0.88174 1.21131 1.01213 0.95333 0.93642 1.21831 1.01679 0.95349 1.01674 1.21792 0.99254 1.01507 0.97899 1.20389 1.01237 1.03494 0.92979 1.22280 0.98275 0.92451 0.96754 0.91217 0.91005 0.91932 0.89944 0.87696 0.90407 0.89488 0.96063 0.96395 0.78247 0.93508 0.84586 0.85003 0.91682 0.91769 0.90029 0.92437 0.91796 0.92620 0.92272 0.91631 0.92222 0.84660 0.81610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 9.13 37.16 0.34 -1.23 16 2 C 0.07 0.75 5.58 -4.04 -0.02 0.73 16 3 N -0.60 -8.99 2.48 -174.89 -0.43 -9.42 16 4 C 0.11 1.92 5.58 -4.04 -0.02 1.90 16 5 C 0.14 3.12 6.58 -4.04 -0.03 3.09 16 6 N -0.73 -19.43 5.60 -59.91 -0.34 -19.77 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.88 13.06 55.49 0.72 -28.15 16 11 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.56 9.17 7.45 -12.44 -0.09 9.08 16 16 O -0.53 -10.90 16.25 5.29 0.09 -10.81 16 17 C -0.16 -2.16 5.59 -104.96 -0.59 -2.75 16 18 C -0.02 -0.25 9.59 -39.22 -0.38 -0.63 16 19 C -0.22 -2.19 9.01 -39.50 -0.36 -2.55 16 20 C 0.15 1.49 6.70 -39.02 -0.26 1.23 16 21 O -0.31 -2.78 9.66 -18.83 -0.18 -2.97 16 22 C 0.06 0.39 4.11 37.16 0.15 0.54 16 23 C -0.09 -0.50 3.16 -90.62 -0.29 -0.79 16 24 C -0.15 -0.80 9.09 37.16 0.34 -0.46 16 25 C -0.15 -0.58 9.19 37.16 0.34 -0.24 16 26 C -0.16 -1.53 9.97 -39.50 -0.39 -1.92 16 27 C -0.08 -0.82 7.48 -39.22 -0.29 -1.11 16 28 H 0.07 0.68 7.93 -51.93 -0.41 0.26 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.53 7.07 -51.93 -0.37 0.17 16 31 H 0.08 0.89 8.13 -51.93 -0.42 0.46 16 32 H 0.11 0.99 4.01 -52.20 -0.21 0.78 16 33 H 0.08 1.27 7.86 -51.93 -0.41 0.86 16 34 H 0.09 1.73 7.34 -51.93 -0.38 1.35 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.38 10.59 7.67 -40.82 -0.31 10.27 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.14 1.70 7.91 -52.49 -0.42 1.28 16 40 H 0.13 1.03 6.28 -52.48 -0.33 0.70 16 41 H 0.06 0.39 7.64 -51.93 -0.40 0.00 16 42 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.06 0.41 7.82 -51.93 -0.41 0.01 16 46 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 48 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 50 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 51 H 0.17 1.41 2.53 -52.48 -0.13 1.28 16 LS Contribution 408.96 15.07 6.16 6.16 Total: -1.00 -34.92 408.96 -9.16 -44.08 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.36 Total: 5.63 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.79 Total: -2.72 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.04 Total: -57.35 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.10 Total: -13.78 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.92 -9.16 -44.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754079902.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.873 kcal (2) G-P(sol) polarization free energy of solvation -34.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds