Wall clock time and date at job start Tue Mar 31 2020 18:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47354 * 2 1 4 4 C 1.46497 * 119.99926 * 278.38684 * 3 2 1 5 5 C 1.53003 * 109.47295 * 269.99897 * 4 3 2 6 6 N 1.46497 * 109.47295 * 179.97438 * 5 4 3 7 7 C 1.36936 * 119.99889 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00293 * 0.02562 * 7 6 5 9 9 C 1.38814 * 119.99614 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00514 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99649 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47330 * 89.99706 * 11 9 7 13 13 H 1.48506 * 109.46786 * 209.99607 * 11 9 7 14 14 H 1.48502 * 109.47173 * 329.99499 * 11 9 7 15 15 C 1.34775 * 119.99944 * 98.38703 * 3 2 1 16 16 O 1.21590 * 120.00068 * 186.49421 * 15 3 2 17 17 C 1.47600 * 120.00165 * 6.49091 * 15 3 2 18 18 C 1.39736 * 120.09108 * 150.36713 * 17 15 3 19 19 C 1.37697 * 119.91343 * 180.29954 * 18 17 15 20 20 C 1.38999 * 120.08943 * 359.44648 * 19 18 17 21 21 O 1.35708 * 119.91396 * 180.25629 * 20 19 18 22 22 C 1.42901 * 117.00031 * 0.29723 * 21 20 19 23 23 C 1.53001 * 109.47387 * 179.97438 * 22 21 20 24 24 C 1.53001 * 109.46682 * 64.99995 * 23 22 21 25 25 C 1.52998 * 109.47486 * 184.99810 * 23 22 21 26 26 C 1.38992 * 120.17342 * 0.55450 * 20 19 18 27 27 C 1.37705 * 120.08971 * 359.72304 * 26 20 19 28 28 H 1.08998 * 109.47022 * 59.99801 * 1 2 3 29 29 H 1.09000 * 109.46991 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46762 * 300.00281 * 1 2 3 31 31 H 1.08999 * 109.47641 * 239.99758 * 2 1 3 32 32 H 1.09007 * 109.46950 * 119.99960 * 2 1 3 33 33 H 1.08998 * 109.47394 * 29.99785 * 4 3 2 34 34 H 1.09000 * 109.47261 * 150.00071 * 4 3 2 35 35 H 1.08998 * 109.46808 * 300.00246 * 5 4 3 36 36 H 1.09000 * 109.46824 * 59.99906 * 5 4 3 37 37 H 0.97000 * 119.99839 * 0.02562 * 6 5 4 38 38 H 0.96993 * 120.00204 * 180.02562 * 10 9 7 39 39 H 1.07999 * 120.03818 * 0.02562 * 18 17 15 40 40 H 1.08007 * 119.95561 * 179.70280 * 19 18 17 41 41 H 1.09002 * 109.47115 * 300.00186 * 22 21 20 42 42 H 1.09002 * 109.47339 * 59.99743 * 22 21 20 43 43 H 1.08996 * 109.46919 * 305.00504 * 23 22 21 44 44 H 1.09001 * 109.47337 * 180.02562 * 24 23 22 45 45 H 1.08999 * 109.47097 * 300.00087 * 24 23 22 46 46 H 1.08998 * 109.47083 * 60.00031 * 24 23 22 47 47 H 1.09000 * 109.46771 * 59.99946 * 25 23 22 48 48 H 1.08995 * 109.47176 * 179.97438 * 25 23 22 49 49 H 1.08998 * 109.47136 * 300.00494 * 25 23 22 50 50 H 1.07999 * 119.95873 * 179.70149 * 26 20 19 51 51 H 1.08004 * 120.04534 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0881 2.1335 -1.2551 5 6 3.4579 1.9197 -1.9025 6 7 3.5274 2.6714 -3.1580 7 6 4.6658 2.6314 -3.9178 8 1 5.5123 2.0453 -3.5919 9 6 4.7318 3.3442 -5.1072 10 7 3.7000 4.0581 -5.5048 11 14 6.2846 3.2890 -6.1441 12 1 6.1945 2.1656 -7.1112 13 1 6.4316 4.5683 -6.8838 14 1 7.4623 3.0893 -5.2618 15 6 2.4036 1.9598 1.1547 16 8 2.6963 3.1397 1.1754 17 6 2.4699 1.1611 2.3942 18 6 3.3898 1.4922 3.3926 19 6 3.4528 0.7409 4.5448 20 6 2.5950 -0.3387 4.7205 21 8 2.6566 -1.0736 5.8597 22 6 3.6213 -0.6767 6.8364 23 6 3.5425 -1.6155 8.0420 24 6 3.9537 -3.0267 7.6171 25 6 4.4863 -1.1178 9.1385 26 6 1.6786 -0.6714 3.7298 27 6 1.6133 0.0716 2.5722 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.3081 1.7845 -1.9317 34 1 1.9443 3.1946 -1.0513 35 1 4.2379 2.2686 -1.2259 36 1 3.6017 0.8586 -2.1064 37 1 2.7669 3.1976 -3.4509 38 1 3.7460 4.5558 -6.3360 39 1 4.0535 2.3336 3.2587 40 1 4.1668 0.9933 5.3149 41 1 4.6198 -0.7259 6.4018 42 1 3.4147 0.3443 7.1573 43 1 2.5212 -1.6337 8.4222 44 1 3.8971 -3.6957 8.4758 45 1 3.2813 -3.3813 6.8359 46 1 4.9750 -3.0086 7.2368 47 1 4.1934 -0.1125 9.4412 48 1 4.4298 -1.7864 9.9975 49 1 5.5076 -1.0997 8.7582 50 1 1.0171 -1.5138 3.8679 51 1 0.9012 -0.1878 1.8027 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754079902.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:40 Heat of formation + Delta-G solvation = -38.170441 kcal Electronic energy + Delta-G solvation = -28320.445083 eV Core-core repulsion = 24413.595160 eV Total energy + Delta-G solvation = -3906.849923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.86472 -40.76546 -38.50469 -37.69524 -36.55115 -36.08961 -33.81435 -32.40262 -31.68016 -31.24234 -29.18815 -28.04298 -27.63609 -25.93231 -24.67204 -24.10170 -23.63499 -22.89210 -21.14109 -20.63756 -19.32489 -19.19448 -18.42351 -17.59617 -17.16077 -16.88829 -16.81304 -16.32974 -16.04558 -15.71724 -15.40579 -15.25103 -15.14732 -14.93610 -14.78377 -14.75308 -14.19040 -14.05485 -13.79339 -13.58553 -13.37295 -13.20085 -13.08593 -12.99046 -12.91424 -12.80925 -12.62926 -12.36121 -12.30233 -12.15001 -12.03053 -12.02025 -11.89688 -11.80996 -11.56343 -11.50918 -11.00590 -10.95819 -10.05460 -9.80721 -9.27249 -9.08969 -7.99351 -5.30564 -0.10861 0.26150 1.44802 1.47899 1.56319 1.67595 1.90765 2.11645 2.54284 2.71193 3.33396 3.44096 3.66660 3.75838 3.83871 3.89029 3.96761 4.05634 4.11606 4.12138 4.15137 4.18289 4.31363 4.36103 4.43912 4.48861 4.51694 4.54885 4.56111 4.67276 4.80445 4.85306 4.86833 4.94165 4.99757 5.01657 5.02062 5.03498 5.11692 5.19519 5.23076 5.30146 5.35512 5.39184 5.41138 5.41484 5.51033 5.60364 6.21708 6.32523 6.35862 7.07528 7.27943 7.98824 8.25151 9.23861 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.018203 B = 0.001985 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.839535 B =14105.597727 C =14826.403850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.062 3.938 3 N -0.597 5.597 4 C 0.122 3.878 5 C 0.150 3.850 6 N -0.742 5.742 7 C -0.253 4.253 8 H 0.073 0.927 9 C -0.073 4.073 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.272 1.272 15 C 0.552 3.448 16 O -0.588 6.588 17 C -0.188 4.188 18 C -0.036 4.036 19 C -0.215 4.215 20 C 0.152 3.848 21 O -0.313 6.313 22 C 0.052 3.948 23 C -0.092 4.092 24 C -0.148 4.148 25 C -0.145 4.145 26 C -0.158 4.158 27 C -0.070 4.070 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.060 0.940 35 H -0.003 1.003 36 H 0.031 0.969 37 H 0.376 0.624 38 H 0.254 0.746 39 H 0.122 0.878 40 H 0.152 0.848 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.061 0.939 50 H 0.163 0.837 51 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.757 -17.969 30.239 35.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.058 4.058 3 N -0.328 5.328 4 C -0.001 4.001 5 C 0.022 3.978 6 N -0.385 5.385 7 C -0.385 4.385 8 H 0.091 0.909 9 C -0.265 4.265 10 N -0.617 5.617 11 Si 0.807 3.193 12 H -0.207 1.207 13 H -0.219 1.219 14 H -0.198 1.198 15 C 0.343 3.657 16 O -0.469 6.469 17 C -0.191 4.191 18 C -0.055 4.055 19 C -0.234 4.234 20 C 0.106 3.894 21 O -0.226 6.226 22 C -0.023 4.023 23 C -0.110 4.110 24 C -0.205 4.205 25 C -0.203 4.203 26 C -0.176 4.176 27 C -0.087 4.087 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.141 0.859 33 H 0.116 0.884 34 H 0.079 0.921 35 H 0.015 0.985 36 H 0.049 0.951 37 H 0.208 0.792 38 H 0.062 0.938 39 H 0.140 0.860 40 H 0.169 0.831 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.080 0.920 50 H 0.181 0.819 51 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -5.546 -17.602 30.275 35.457 hybrid contribution 0.879 1.056 -1.053 1.731 sum -4.667 -16.546 29.222 33.904 Atomic orbital electron populations 1.22300 0.93710 1.04708 1.02730 1.22803 0.96067 0.80892 1.06061 1.47842 1.63622 1.15424 1.05897 1.21333 0.97227 0.96825 0.84728 1.20934 0.95402 0.94804 0.86660 1.42372 1.16287 1.57725 1.22128 1.19591 0.93708 1.23939 1.01240 0.90931 1.25643 1.01208 0.99931 0.99746 1.69818 1.31787 1.35853 1.24193 0.85065 0.78900 0.76823 0.78474 1.20701 1.21859 1.19752 1.18843 0.75962 0.86537 0.84368 1.90767 1.51523 1.17934 1.86688 1.19711 1.03696 1.00403 0.95305 1.21035 0.95537 0.97306 0.91615 1.21327 1.03754 0.98263 1.00023 1.19447 0.93624 0.89727 0.86630 1.86022 1.57624 1.53281 1.25722 1.23234 0.91382 0.99574 0.88085 1.21140 1.01506 0.94993 0.93409 1.21830 1.01351 0.95623 1.01702 1.21785 0.98979 1.01855 0.97631 1.20699 1.01083 1.03733 0.92120 1.22391 0.97565 0.91177 0.97590 0.92327 0.87659 0.91680 0.89579 0.85906 0.88430 0.92099 0.98470 0.95096 0.79198 0.93750 0.86037 0.83057 0.91131 0.90998 0.90184 0.91561 0.92908 0.92610 0.91905 0.90929 0.92022 0.81907 0.79805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 9.13 71.98 0.66 -1.94 16 2 C 0.06 1.23 5.58 86.38 0.48 1.71 16 3 N -0.60 -18.00 2.48 -825.48 -2.05 -20.05 16 4 C 0.12 4.50 5.58 86.38 0.48 4.98 16 5 C 0.15 6.69 6.58 86.38 0.57 7.26 16 6 N -0.74 -40.50 5.60 -343.46 -1.92 -42.43 16 7 C -0.25 -14.96 9.99 84.03 0.84 -14.12 16 8 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 9 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 10 N -0.97 -60.71 13.06 21.65 0.28 -60.43 16 11 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 13 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 14 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 15 C 0.55 18.79 7.45 86.71 0.65 19.43 16 16 O -0.59 -25.72 16.25 -4.00 -0.06 -25.79 16 17 C -0.19 -4.92 5.59 -20.08 -0.11 -5.03 16 18 C -0.04 -0.89 9.59 22.50 0.22 -0.68 16 19 C -0.22 -4.07 9.01 22.32 0.20 -3.87 16 20 C 0.15 2.68 6.70 22.63 0.15 2.83 16 21 O -0.31 -4.85 9.66 -90.28 -0.87 -5.72 16 22 C 0.05 0.57 4.11 71.98 0.30 0.86 16 23 C -0.09 -0.79 3.16 -10.79 -0.03 -0.82 16 24 C -0.15 -1.33 9.09 71.98 0.65 -0.68 16 25 C -0.15 -0.85 9.19 71.98 0.66 -0.19 16 26 C -0.16 -2.50 9.97 22.32 0.22 -2.28 16 27 C -0.07 -1.28 7.48 22.51 0.17 -1.12 16 28 H 0.06 1.02 7.93 -2.39 -0.02 1.00 16 29 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.95 7.07 -2.39 -0.02 0.93 16 31 H 0.09 1.67 8.13 -2.39 -0.02 1.65 16 32 H 0.12 2.01 4.01 -2.64 -0.01 2.00 16 33 H 0.10 3.18 7.86 -2.39 -0.02 3.16 16 34 H 0.06 2.57 7.34 -2.39 -0.02 2.55 16 35 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.38 21.42 7.67 -92.71 -0.71 20.71 16 38 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.12 3.28 7.91 -2.91 -0.02 3.26 16 40 H 0.15 2.15 6.28 -2.91 -0.02 2.13 16 41 H 0.07 0.71 7.64 -2.39 -0.02 0.69 16 42 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.05 0.59 7.82 -2.39 -0.02 0.57 16 46 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 48 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 49 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 50 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 51 H 0.19 2.60 2.53 -2.91 -0.01 2.59 16 Total: -1.00 -77.50 408.96 4.18 -73.32 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.21 Total: 29.11 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 6.57 Total: 2.50 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -3.69 Total: -122.90 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -0.94 Total: -31.51 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -77.50 4.18 -73.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754079902.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.152 kcal (2) G-P(sol) polarization free energy of solvation -77.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds