Wall clock time and date at job start Tue Mar 31 2020 18:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47383 * 2 1 4 4 C 1.46501 * 119.99933 * 270.00636 * 3 2 1 5 5 C 1.53005 * 109.46655 * 269.99618 * 4 3 2 6 6 N 1.46501 * 109.46655 * 180.02562 * 5 4 3 7 7 C 1.36942 * 119.99674 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99892 * 0.02562 * 7 6 5 9 9 C 1.38809 * 119.99872 * 180.02562 * 7 6 5 10 10 N 1.31624 * 119.99959 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00302 * 359.97438 * 9 7 6 12 12 H 1.48499 * 109.46948 * 89.99958 * 11 9 7 13 13 H 1.48498 * 109.47284 * 210.00431 * 11 9 7 14 14 H 1.48505 * 109.47070 * 330.00241 * 11 9 7 15 15 C 1.34773 * 119.99884 * 89.99959 * 3 2 1 16 16 O 1.21283 * 119.99680 * 180.02562 * 15 3 2 17 17 C 1.50702 * 120.00179 * 0.02562 * 15 3 2 18 18 C 1.50702 * 109.47129 * 180.02562 * 17 15 3 19 19 C 1.38290 * 119.97095 * 269.97885 * 18 17 15 20 20 C 1.38242 * 120.11135 * 180.02562 * 19 18 17 21 21 C 1.38164 * 120.05684 * 359.68692 * 20 19 18 22 22 C 1.38720 * 119.94016 * 0.60957 * 21 20 19 23 23 O 1.35900 * 120.05551 * 179.68011 * 22 21 20 24 24 C 1.42901 * 116.99695 * 5.20294 * 23 22 21 25 25 C 1.53002 * 109.46955 * 155.20401 * 24 23 22 26 26 C 1.53001 * 109.47160 * 275.19815 * 24 23 22 27 27 C 1.38114 * 119.97383 * 90.00188 * 18 17 15 28 28 H 1.09005 * 109.47032 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46937 * 299.99784 * 1 2 3 30 30 H 1.08994 * 109.47331 * 59.99826 * 1 2 3 31 31 H 1.09002 * 109.46806 * 239.99691 * 2 1 3 32 32 H 1.09001 * 109.47022 * 120.00373 * 2 1 3 33 33 H 1.09001 * 109.47361 * 29.99134 * 4 3 2 34 34 H 1.08992 * 109.47233 * 149.99918 * 4 3 2 35 35 H 1.09001 * 109.46841 * 299.99834 * 5 4 3 36 36 H 1.09000 * 109.47381 * 60.00304 * 5 4 3 37 37 H 0.96989 * 120.00324 * 0.02562 * 6 5 4 38 38 H 0.96995 * 119.99959 * 179.97438 * 10 9 7 39 39 H 1.09004 * 109.46674 * 60.00283 * 17 15 3 40 40 H 1.09000 * 109.47199 * 300.00260 * 17 15 3 41 41 H 1.07999 * 119.94588 * 0.02562 * 19 18 17 42 42 H 1.08006 * 119.97138 * 179.97438 * 20 19 18 43 43 H 1.07992 * 120.03141 * 180.29534 * 21 20 19 44 44 H 1.08997 * 109.47813 * 35.20065 * 24 23 22 45 45 H 1.09002 * 109.47542 * 59.99473 * 25 24 23 46 46 H 1.09000 * 109.47270 * 180.02562 * 25 24 23 47 47 H 1.09006 * 109.47130 * 299.99850 * 25 24 23 48 48 H 1.08999 * 109.47319 * 180.02562 * 26 24 23 49 49 H 1.08997 * 109.47326 * 300.00086 * 26 24 23 50 50 H 1.09007 * 109.47015 * 60.00235 * 26 24 23 51 51 H 1.08004 * 120.02561 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 7 3.9517 2.5225 -2.9789 7 6 5.1838 2.4496 -3.5721 8 1 5.9753 1.8823 -3.1050 9 6 5.4154 3.1049 -4.7737 10 7 6.5998 3.0352 -5.3436 11 14 4.0463 4.0855 -5.5818 12 1 4.0881 5.4878 -5.0950 13 1 4.2279 4.0675 -7.0556 14 1 2.7345 3.4808 -5.2374 15 6 2.2430 2.0165 1.1672 16 8 2.6469 3.1601 1.1671 17 6 1.9924 1.3059 2.4723 18 6 2.3181 2.2295 3.6178 19 6 3.5971 2.2540 4.1431 20 6 3.8990 3.0997 5.1942 21 6 2.9247 3.9274 5.7182 22 6 1.6394 3.9002 5.1970 23 8 0.6776 4.7087 5.7150 24 6 1.0855 5.6424 6.7169 25 6 0.1146 6.8247 6.7376 26 6 1.0829 4.9565 8.0846 27 6 1.3390 3.0503 4.1422 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0955 3.1410 -1.1384 35 1 4.3883 2.2155 -0.9508 36 1 3.8744 0.7622 -1.8408 37 1 3.2408 3.0317 -3.3985 38 1 6.7616 3.4928 -6.1834 39 1 2.6230 0.4187 2.5298 40 1 0.9445 1.0113 2.5302 41 1 4.3614 1.6114 3.7316 42 1 4.8985 3.1167 5.6031 43 1 3.1622 4.5913 6.5362 44 1 2.0900 6.0010 6.4922 45 1 -0.8899 6.4662 6.9623 46 1 0.4259 7.5372 7.5015 47 1 0.1164 7.3134 5.7632 48 1 1.3935 5.6688 8.8489 49 1 0.0784 4.5980 8.3094 50 1 1.7745 4.1141 8.0699 51 1 0.3401 3.0302 3.7321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754083405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:47 Heat of formation + Delta-G solvation = -61.795205 kcal Electronic energy + Delta-G solvation = -28526.897792 eV Core-core repulsion = 24619.023422 eV Total energy + Delta-G solvation = -3907.874370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.50803 -40.87123 -38.78186 -37.52816 -36.46809 -34.26759 -34.00572 -33.43170 -31.73161 -30.81991 -29.98495 -28.49650 -27.96100 -25.43477 -24.34889 -23.81245 -23.52385 -23.10660 -21.37916 -20.26051 -19.52067 -18.90131 -18.14031 -17.44315 -17.17365 -16.98346 -16.50148 -16.32179 -16.28393 -15.66980 -15.42105 -15.19909 -14.99373 -14.88089 -14.74140 -14.55509 -14.45344 -13.95463 -13.77989 -13.63884 -13.41745 -13.30354 -13.14393 -13.02292 -12.98774 -12.77592 -12.75932 -12.60612 -12.42949 -12.33932 -12.12065 -12.08378 -11.88606 -11.84936 -11.70671 -11.53662 -11.04127 -10.89019 -9.79507 -9.71584 -9.38274 -9.12362 -8.06992 -5.42612 0.31049 0.50472 1.35198 1.40714 1.47108 1.64265 1.96193 2.23903 2.45431 2.80426 3.23904 3.60974 3.67134 3.77443 3.78708 3.89721 3.98979 4.04730 4.10461 4.13733 4.16356 4.17870 4.24379 4.37967 4.44176 4.47601 4.53152 4.58599 4.63488 4.67893 4.71479 4.79698 4.83372 4.89712 4.91996 4.99409 5.06096 5.07625 5.09504 5.16808 5.24140 5.35830 5.42234 5.47475 5.55455 5.61713 5.69867 5.83033 6.16006 6.43557 6.50313 7.01320 7.20746 7.75156 7.96129 9.14266 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.002315 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.316509 B =12093.745449 C =12814.271147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.093 3.907 3 N -0.606 5.606 4 C 0.118 3.882 5 C 0.151 3.849 6 N -0.755 5.755 7 C -0.241 4.241 8 H 0.053 0.947 9 C -0.063 4.063 10 N -0.982 5.982 11 Si 0.959 3.041 12 H -0.282 1.282 13 H -0.289 1.289 14 H -0.246 1.246 15 C 0.508 3.492 16 O -0.580 6.580 17 C -0.092 4.092 18 C -0.036 4.036 19 C -0.158 4.158 20 C -0.086 4.086 21 C -0.215 4.215 22 C 0.117 3.883 23 O -0.329 6.329 24 C 0.066 3.934 25 C -0.147 4.147 26 C -0.174 4.174 27 C -0.158 4.158 28 H 0.091 0.909 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.003 0.997 36 H 0.035 0.965 37 H 0.368 0.632 38 H 0.260 0.740 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.146 0.854 43 H 0.145 0.855 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.100 0.900 47 H 0.054 0.946 48 H 0.092 0.908 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.002 -3.949 29.012 34.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.028 4.028 3 N -0.339 5.339 4 C -0.006 4.006 5 C 0.023 3.977 6 N -0.402 5.402 7 C -0.371 4.371 8 H 0.071 0.929 9 C -0.255 4.255 10 N -0.632 5.632 11 Si 0.785 3.215 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.170 1.170 15 C 0.298 3.702 16 O -0.459 6.459 17 C -0.131 4.131 18 C -0.037 4.037 19 C -0.176 4.176 20 C -0.104 4.104 21 C -0.234 4.234 22 C 0.072 3.928 23 O -0.244 6.244 24 C 0.010 3.990 25 C -0.204 4.204 26 C -0.231 4.231 27 C -0.176 4.176 28 H 0.110 0.890 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.021 0.979 36 H 0.053 0.947 37 H 0.201 0.799 38 H 0.069 0.931 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.118 0.882 47 H 0.073 0.927 48 H 0.111 0.889 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.805 -3.430 28.968 34.175 hybrid contribution 0.160 0.898 -0.959 1.324 sum -17.645 -2.532 28.009 33.200 Atomic orbital electron populations 1.22190 0.94443 1.03676 1.02204 1.21972 0.95506 0.80084 1.05231 1.48033 1.65438 1.15777 1.04612 1.21356 0.95385 0.97966 0.85862 1.20956 0.95289 0.95384 0.86026 1.42528 1.10987 1.62269 1.24394 1.18984 0.89236 1.26017 1.02909 0.92893 1.25575 0.99404 1.02036 0.98481 1.69889 1.23535 1.49388 1.20349 0.85357 0.80027 0.78729 0.77377 1.20855 1.21557 1.16996 1.21208 0.76406 0.86338 0.86294 1.90742 1.46918 1.20352 1.87917 1.20810 1.06749 0.98299 0.87225 1.19280 0.93373 0.96032 0.94972 1.21184 0.96200 1.01939 0.98322 1.21215 0.99672 0.94125 0.95342 1.21480 0.92803 1.04408 1.04666 1.19085 0.88381 0.91789 0.93544 1.86090 1.35330 1.48157 1.54802 1.22722 0.99911 0.89138 0.87225 1.21890 0.99457 0.95802 1.03269 1.22350 1.03212 1.01771 0.95796 1.20373 1.00844 0.98898 0.97519 0.89048 0.92125 0.93341 0.89623 0.87428 0.88283 0.91944 0.97938 0.94700 0.79908 0.93124 0.84839 0.85019 0.85100 0.83671 0.83712 0.90805 0.91430 0.88186 0.92671 0.88895 0.91651 0.92327 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 71.98 0.74 -1.26 16 2 C 0.09 1.42 5.93 86.38 0.51 1.93 16 3 N -0.61 -15.22 2.47 -821.81 -2.03 -17.26 16 4 C 0.12 3.78 5.52 86.38 0.48 4.26 16 5 C 0.15 6.23 6.58 86.38 0.57 6.80 16 6 N -0.76 -37.60 5.41 -343.44 -1.86 -39.46 16 7 C -0.24 -14.48 10.47 84.03 0.88 -13.60 16 8 H 0.05 3.49 8.06 -2.91 -0.02 3.47 16 9 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 10 N -0.98 -64.59 13.97 21.65 0.30 -64.29 16 11 Si 0.96 46.72 27.74 68.60 1.90 48.62 16 12 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 13 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 14 H -0.25 -10.60 6.52 99.48 0.65 -9.95 16 15 C 0.51 14.28 7.67 87.66 0.67 14.95 16 16 O -0.58 -22.88 15.61 -3.04 -0.05 -22.93 16 17 C -0.09 -1.68 4.38 29.10 0.13 -1.55 16 18 C -0.04 -0.84 4.37 -19.88 -0.09 -0.92 16 19 C -0.16 -3.61 9.70 22.28 0.22 -3.39 16 20 C -0.09 -1.79 10.04 22.25 0.22 -1.56 16 21 C -0.22 -4.52 8.24 22.37 0.18 -4.34 16 22 C 0.12 2.82 6.60 22.51 0.15 2.97 16 23 O -0.33 -7.46 9.80 -92.42 -0.91 -8.37 16 24 C 0.07 1.01 2.85 30.60 0.09 1.10 16 25 C -0.15 -1.79 9.56 71.98 0.69 -1.10 16 26 C -0.17 -1.98 9.17 71.98 0.66 -1.32 16 27 C -0.16 -3.88 9.64 22.36 0.22 -3.67 16 28 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.69 7.22 -2.38 -0.02 0.67 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 1.34 8.07 -2.39 -0.02 1.32 16 32 H 0.11 1.04 6.44 -2.39 -0.02 1.03 16 33 H 0.10 2.70 8.07 -2.39 -0.02 2.68 16 34 H 0.06 2.28 7.42 -2.39 -0.02 2.26 16 35 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 36 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.37 17.17 5.53 -92.72 -0.51 16.66 16 38 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 39 H 0.13 1.67 7.35 -2.38 -0.02 1.65 16 40 H 0.13 1.62 7.13 -2.39 -0.02 1.61 16 41 H 0.13 2.64 8.06 -2.91 -0.02 2.61 16 42 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.15 2.35 5.43 -2.91 -0.02 2.33 16 44 H 0.07 1.11 6.31 -2.39 -0.02 1.09 16 45 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 48 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.06 0.74 6.91 -2.38 -0.02 0.72 16 51 H 0.13 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -83.31 411.90 4.48 -78.83 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.34 Total: 28.94 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 6.78 Total: -4.10 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -3.59 Total: -121.00 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.95 Total: -31.29 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.90 Total: 48.62 kcal Total: -83.31 4.48 -78.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754083405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.038 kcal (2) G-P(sol) polarization free energy of solvation -83.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds