Wall clock time and date at job start Tue Mar 31 2020 18:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47133 * 2 1 4 4 C 1.53007 * 109.47176 * 119.99387 * 2 1 3 5 5 H 1.09007 * 109.46903 * 60.00150 * 4 2 1 6 6 C 1.52997 * 109.47176 * 179.97438 * 4 2 1 7 7 C 1.53001 * 109.46922 * 185.00123 * 6 4 2 8 8 N 1.46497 * 109.46950 * 180.02562 * 7 6 4 9 9 C 1.34778 * 120.00372 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99500 * 0.02562 * 9 8 7 11 11 C 1.50693 * 120.00282 * 179.97438 * 9 8 7 12 12 H 1.09007 * 109.46897 * 55.00605 * 11 9 8 13 13 C 1.52998 * 109.47745 * 295.00625 * 11 9 8 14 14 O 1.42903 * 109.47038 * 175.00265 * 11 9 8 15 15 C 1.35902 * 116.99837 * 204.95440 * 14 11 9 16 16 C 1.38736 * 120.05157 * 174.27923 * 15 14 11 17 17 C 1.38151 * 119.93928 * 179.74434 * 16 15 14 18 18 C 1.38264 * 120.05546 * 0.50287 * 17 16 15 19 19 C 1.38265 * 120.11503 * 359.77002 * 18 17 16 20 20 C 1.38146 * 120.05095 * 359.97438 * 19 18 17 21 21 N 1.46503 * 109.47100 * 300.00208 * 4 2 1 22 22 C 1.36938 * 119.99946 * 84.99721 * 21 4 2 23 23 H 1.08004 * 120.00280 * 0.02562 * 22 21 4 24 24 C 1.38813 * 119.99799 * 179.97438 * 22 21 4 25 25 N 1.31621 * 119.99707 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00225 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.46886 * 89.99965 * 26 24 22 28 28 H 1.48494 * 109.47491 * 210.00465 * 26 24 22 29 29 H 1.48500 * 109.47010 * 330.00402 * 26 24 22 30 30 H 1.09003 * 109.47087 * 300.00161 * 1 2 3 31 31 H 1.08998 * 109.47305 * 60.00528 * 1 2 3 32 32 H 1.08996 * 109.47443 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47324 * 239.99416 * 2 1 3 34 34 H 1.08999 * 109.47322 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.46550 * 299.99838 * 3 2 1 36 36 H 1.08999 * 109.47493 * 59.99519 * 3 2 1 37 37 H 1.09002 * 109.46925 * 64.99888 * 6 4 2 38 38 H 1.08997 * 109.47031 * 305.00574 * 6 4 2 39 39 H 1.09000 * 109.47002 * 60.00214 * 7 6 4 40 40 H 1.08995 * 109.47057 * 299.99602 * 7 6 4 41 41 H 0.97010 * 119.99936 * 359.97438 * 8 7 6 42 42 H 1.08998 * 109.47055 * 59.99539 * 13 11 9 43 43 H 1.09007 * 109.46907 * 299.99974 * 13 11 9 44 44 H 1.08997 * 109.47715 * 180.02562 * 13 11 9 45 45 H 1.07994 * 120.02723 * 359.97438 * 16 15 14 46 46 H 1.08000 * 119.97134 * 180.23118 * 17 16 15 47 47 H 1.08005 * 119.94328 * 179.74620 * 18 17 16 48 48 H 1.07996 * 119.97327 * 179.97438 * 19 18 17 49 49 H 1.08007 * 120.02206 * 179.97438 * 20 19 18 50 50 H 0.96998 * 119.99707 * 264.99396 * 21 4 2 51 51 H 0.97001 * 119.99683 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6767 -1.7489 1.2494 6 6 3.5700 -0.7217 1.2490 7 6 4.0799 -1.5490 2.4308 8 7 5.5449 -1.5490 2.4308 9 6 6.2188 -2.2180 3.3873 10 8 5.6123 -2.8203 4.2477 11 6 7.7257 -2.2185 3.3870 12 1 8.0894 -1.1909 3.3863 13 6 8.2354 -2.9407 2.1382 14 8 8.2020 -2.8915 4.5542 15 6 9.4430 -2.5570 4.9960 16 6 9.9209 -3.0818 6.1880 17 6 11.1848 -2.7443 6.6323 18 6 11.9690 -1.8764 5.8953 19 6 11.4928 -1.3476 4.7098 20 6 10.2317 -1.6860 4.2586 21 7 1.5516 -0.0304 2.4455 22 6 0.3100 -0.3208 2.9448 23 1 -0.3090 -1.0593 2.4572 24 6 -0.1525 0.3333 4.0785 25 7 -1.3456 0.0538 4.5587 26 14 0.9191 1.6091 4.9233 27 1 0.6458 2.9481 4.3422 28 1 0.6137 1.6282 6.3763 29 1 2.3497 1.2651 4.7227 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 3.9337 0.3020 1.3383 38 1 3.9329 -1.1563 0.3177 39 1 3.7162 -2.5727 2.3415 40 1 3.7170 -1.1143 3.3621 41 1 6.0299 -1.0675 1.7424 42 1 7.8720 -2.4274 1.2479 43 1 7.8717 -3.9683 2.1389 44 1 9.3253 -2.9415 2.1382 45 1 9.3069 -3.7563 6.7662 46 1 11.5588 -3.1555 7.5583 47 1 12.9552 -1.6106 6.2463 48 1 12.1072 -0.6695 4.1361 49 1 9.8600 -1.2724 3.3327 50 1 2.1078 0.6325 2.8837 51 1 -1.6690 0.5112 5.3507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755552759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:26 Heat of formation + Delta-G solvation = -44.458396 kcal Electronic energy + Delta-G solvation = -28737.992805 eV Core-core repulsion = 24830.870216 eV Total energy + Delta-G solvation = -3907.122589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.84805 -39.47154 -37.85557 -37.39277 -34.88992 -32.85131 -32.75087 -31.29855 -30.93432 -30.02062 -29.67295 -26.56508 -25.90389 -24.62761 -23.14682 -22.77628 -22.28421 -21.33651 -20.38988 -18.89426 -18.71051 -17.67503 -17.34390 -16.47677 -16.06865 -15.92090 -15.52310 -15.24143 -14.81559 -14.70033 -14.30589 -14.05263 -13.86426 -13.71399 -13.70587 -13.41099 -13.07118 -12.93190 -12.74554 -12.69372 -12.50404 -12.16111 -11.88781 -11.67918 -11.41619 -11.39137 -11.36614 -11.11813 -11.02671 -10.93827 -10.71115 -10.40652 -10.30341 -10.08812 -9.95047 -9.71205 -9.40094 -9.32484 -9.03891 -8.85784 -8.50406 -7.24019 -5.74243 -3.08713 1.00801 1.12770 2.42155 2.51611 3.38740 3.41105 3.41791 3.47599 3.48151 4.27272 4.44287 4.52526 4.54690 4.60410 4.61321 4.80276 4.99457 5.05058 5.07401 5.15044 5.18459 5.24416 5.33998 5.38932 5.53589 5.57469 5.64565 5.68658 5.69216 5.79659 5.86609 5.98759 5.99244 6.07432 6.15561 6.21275 6.26835 6.29690 6.38066 6.42237 6.49008 6.57524 6.64212 6.71469 6.77921 6.96217 7.07964 7.38965 7.42358 8.02067 8.14856 8.44458 9.22761 9.95281 10.14422 11.43974 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014410 B = 0.002441 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.630761 B =11470.229298 C =12480.806240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.188 3.812 5 H 0.058 0.942 6 C -0.137 4.137 7 C 0.122 3.878 8 N -0.725 5.725 9 C 0.512 3.488 10 O -0.510 6.510 11 C 0.066 3.934 12 H 0.097 0.903 13 C -0.175 4.175 14 O -0.283 6.283 15 C 0.132 3.868 16 C -0.150 4.150 17 C -0.080 4.080 18 C -0.162 4.162 19 C -0.081 4.081 20 C -0.214 4.214 21 N -0.743 5.743 22 C -0.235 4.235 23 H 0.094 0.906 24 C 0.005 3.995 25 N -0.933 5.933 26 Si 0.879 3.121 27 H -0.286 1.286 28 H -0.293 1.293 29 H -0.278 1.278 30 H 0.090 0.910 31 H 0.029 0.971 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.042 0.958 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.397 0.603 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.133 0.867 46 H 0.129 0.871 47 H 0.123 0.877 48 H 0.124 0.876 49 H 0.129 0.871 50 H 0.360 0.640 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.785 -2.316 -6.988 27.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.197 4.197 4 C 0.078 3.922 5 H 0.076 0.924 6 C -0.176 4.176 7 C -0.001 4.001 8 N -0.378 5.378 9 C 0.295 3.705 10 O -0.384 6.384 11 C 0.006 3.994 12 H 0.115 0.885 13 C -0.232 4.232 14 O -0.196 6.196 15 C 0.087 3.913 16 C -0.168 4.168 17 C -0.098 4.098 18 C -0.180 4.180 19 C -0.099 4.099 20 C -0.232 4.232 21 N -0.386 5.386 22 C -0.365 4.365 23 H 0.111 0.889 24 C -0.191 4.191 25 N -0.581 5.581 26 Si 0.710 3.290 27 H -0.213 1.213 28 H -0.219 1.219 29 H -0.205 1.205 30 H 0.109 0.891 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.230 0.770 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.151 0.849 46 H 0.147 0.853 47 H 0.141 0.859 48 H 0.142 0.858 49 H 0.147 0.853 50 H 0.193 0.807 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 25.931 -3.022 -6.202 26.833 hybrid contribution 0.975 1.437 0.172 1.745 sum 26.906 -1.585 -6.030 27.619 Atomic orbital electron populations 1.21852 0.94728 1.01271 1.02093 1.21659 0.97051 0.96173 0.98035 1.21772 0.99342 0.97166 1.01423 1.20170 0.89046 0.95928 0.87043 0.92373 1.22143 0.98544 0.99938 0.96946 1.21509 0.76643 1.01251 1.00661 1.45989 1.08477 1.53330 1.29988 1.19992 0.88288 0.79953 0.82241 1.90791 1.69506 1.41898 1.36208 1.22228 0.93012 0.98076 0.86055 0.88515 1.22328 1.02654 1.02598 0.95652 1.86241 1.29228 1.60966 1.43145 1.19120 0.84351 0.94371 0.93502 1.20527 0.97114 1.03938 0.95235 1.20999 0.92955 0.96543 0.99315 1.21078 1.00618 1.00066 0.96232 1.20948 0.94783 0.98235 0.95895 1.21315 0.96567 1.03115 1.02247 1.42783 1.18271 1.47826 1.29720 1.19042 0.91106 1.18991 1.07329 0.88868 1.24639 0.96420 0.99830 0.98167 1.69688 1.17762 1.45488 1.25175 0.86637 0.80421 0.82473 0.79492 1.21300 1.21909 1.20455 0.89147 0.95210 0.93877 0.93243 0.93910 0.94204 0.91910 0.91391 0.91420 0.91207 0.90086 0.76973 0.90170 0.90503 0.90658 0.84941 0.85297 0.85937 0.85785 0.85287 0.80728 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.26 37.16 0.31 -2.26 16 2 C -0.11 -1.70 2.80 -90.62 -0.25 -1.96 16 3 C -0.14 -2.08 8.68 37.16 0.32 -1.75 16 4 C 0.19 3.23 2.19 -67.93 -0.15 3.08 16 5 H 0.06 1.07 8.08 -51.93 -0.42 0.66 16 6 C -0.14 -1.81 4.37 -26.73 -0.12 -1.93 16 7 C 0.12 1.82 5.56 -4.04 -0.02 1.80 16 8 N -0.72 -8.57 5.52 -60.30 -0.33 -8.90 16 9 C 0.51 7.27 7.18 -10.99 -0.08 7.19 16 10 O -0.51 -10.06 16.51 -14.30 -0.24 -10.29 16 11 C 0.07 0.70 2.63 -27.89 -0.07 0.63 16 12 H 0.10 0.80 6.31 -51.93 -0.33 0.47 16 13 C -0.17 -1.30 9.12 37.16 0.34 -0.97 16 14 O -0.28 -3.76 9.34 -39.29 -0.37 -4.13 16 15 C 0.13 1.49 6.60 -39.22 -0.26 1.23 16 16 C -0.15 -1.57 9.99 -39.43 -0.39 -1.96 16 17 C -0.08 -0.67 10.04 -39.60 -0.40 -1.07 16 18 C -0.16 -1.24 10.04 -39.56 -0.40 -1.64 16 19 C -0.08 -0.62 10.04 -39.61 -0.40 -1.02 16 20 C -0.21 -1.91 8.24 -39.43 -0.33 -2.23 16 21 N -0.74 -16.00 3.49 -53.42 -0.19 -16.19 16 22 C -0.23 -6.19 8.05 -15.06 -0.12 -6.32 16 23 H 0.09 2.65 7.63 -52.48 -0.40 2.25 16 24 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 25 N -0.93 -28.91 13.97 55.49 0.78 -28.14 16 26 Si 0.88 22.01 27.73 -169.99 -4.71 17.29 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 29 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 30 H 0.09 1.97 6.01 -51.93 -0.31 1.66 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.54 6.55 -51.93 -0.34 0.20 16 35 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.06 1.09 7.60 -51.93 -0.39 0.69 16 37 H 0.07 0.86 6.71 -51.93 -0.35 0.51 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.52 7.75 -51.93 -0.40 1.12 16 41 H 0.40 3.13 8.26 -40.82 -0.34 2.79 16 42 H 0.08 0.41 7.92 -51.93 -0.41 0.00 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 0.48 6.91 -51.93 -0.36 0.12 16 45 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 46 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.12 0.67 8.06 -52.48 -0.42 0.24 16 48 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 49 H 0.13 0.89 5.43 -52.48 -0.29 0.60 16 50 H 0.36 7.81 5.66 -40.82 -0.23 7.58 16 51 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 404.95 15.07 6.10 6.10 Total: -1.00 -34.23 404.95 -9.46 -43.69 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -8.39 Total: 9.68 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -2.11 Total: -9.12 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.26 Total: -53.23 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.60 Total: -14.43 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.23 -9.46 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755552759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.765 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds