Wall clock time and date at job start Tue Mar 31 2020 18:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47133 * 2 1 4 4 C 1.53007 * 109.47176 * 119.99387 * 2 1 3 5 5 H 1.09007 * 109.46903 * 60.00150 * 4 2 1 6 6 C 1.52997 * 109.47176 * 179.97438 * 4 2 1 7 7 C 1.53001 * 109.46922 * 185.00123 * 6 4 2 8 8 N 1.46497 * 109.46950 * 180.02562 * 7 6 4 9 9 C 1.34778 * 120.00372 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99500 * 0.02562 * 9 8 7 11 11 C 1.50693 * 120.00282 * 179.97438 * 9 8 7 12 12 H 1.09007 * 109.46897 * 55.00605 * 11 9 8 13 13 C 1.52998 * 109.47745 * 295.00625 * 11 9 8 14 14 O 1.42903 * 109.47038 * 175.00265 * 11 9 8 15 15 C 1.35902 * 116.99837 * 204.95440 * 14 11 9 16 16 C 1.38736 * 120.05157 * 174.27923 * 15 14 11 17 17 C 1.38151 * 119.93928 * 179.74434 * 16 15 14 18 18 C 1.38264 * 120.05546 * 0.50287 * 17 16 15 19 19 C 1.38265 * 120.11503 * 359.77002 * 18 17 16 20 20 C 1.38146 * 120.05095 * 359.97438 * 19 18 17 21 21 N 1.46503 * 109.47100 * 300.00208 * 4 2 1 22 22 C 1.36938 * 119.99946 * 84.99721 * 21 4 2 23 23 H 1.08004 * 120.00280 * 0.02562 * 22 21 4 24 24 C 1.38813 * 119.99799 * 179.97438 * 22 21 4 25 25 N 1.31621 * 119.99707 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00225 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.46886 * 89.99965 * 26 24 22 28 28 H 1.48494 * 109.47491 * 210.00465 * 26 24 22 29 29 H 1.48500 * 109.47010 * 330.00402 * 26 24 22 30 30 H 1.09003 * 109.47087 * 300.00161 * 1 2 3 31 31 H 1.08998 * 109.47305 * 60.00528 * 1 2 3 32 32 H 1.08996 * 109.47443 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47324 * 239.99416 * 2 1 3 34 34 H 1.08999 * 109.47322 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.46550 * 299.99838 * 3 2 1 36 36 H 1.08999 * 109.47493 * 59.99519 * 3 2 1 37 37 H 1.09002 * 109.46925 * 64.99888 * 6 4 2 38 38 H 1.08997 * 109.47031 * 305.00574 * 6 4 2 39 39 H 1.09000 * 109.47002 * 60.00214 * 7 6 4 40 40 H 1.08995 * 109.47057 * 299.99602 * 7 6 4 41 41 H 0.97010 * 119.99936 * 359.97438 * 8 7 6 42 42 H 1.08998 * 109.47055 * 59.99539 * 13 11 9 43 43 H 1.09007 * 109.46907 * 299.99974 * 13 11 9 44 44 H 1.08997 * 109.47715 * 180.02562 * 13 11 9 45 45 H 1.07994 * 120.02723 * 359.97438 * 16 15 14 46 46 H 1.08000 * 119.97134 * 180.23118 * 17 16 15 47 47 H 1.08005 * 119.94328 * 179.74620 * 18 17 16 48 48 H 1.07996 * 119.97327 * 179.97438 * 19 18 17 49 49 H 1.08007 * 120.02206 * 179.97438 * 20 19 18 50 50 H 0.96998 * 119.99707 * 264.99396 * 21 4 2 51 51 H 0.97001 * 119.99683 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6767 -1.7489 1.2494 6 6 3.5700 -0.7217 1.2490 7 6 4.0799 -1.5490 2.4308 8 7 5.5449 -1.5490 2.4308 9 6 6.2188 -2.2180 3.3873 10 8 5.6123 -2.8203 4.2477 11 6 7.7257 -2.2185 3.3870 12 1 8.0894 -1.1909 3.3863 13 6 8.2354 -2.9407 2.1382 14 8 8.2020 -2.8915 4.5542 15 6 9.4430 -2.5570 4.9960 16 6 9.9209 -3.0818 6.1880 17 6 11.1848 -2.7443 6.6323 18 6 11.9690 -1.8764 5.8953 19 6 11.4928 -1.3476 4.7098 20 6 10.2317 -1.6860 4.2586 21 7 1.5516 -0.0304 2.4455 22 6 0.3100 -0.3208 2.9448 23 1 -0.3090 -1.0593 2.4572 24 6 -0.1525 0.3333 4.0785 25 7 -1.3456 0.0538 4.5587 26 14 0.9191 1.6091 4.9233 27 1 0.6458 2.9481 4.3422 28 1 0.6137 1.6282 6.3763 29 1 2.3497 1.2651 4.7227 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8901 36 1 1.6766 1.9564 0.8899 37 1 3.9337 0.3020 1.3383 38 1 3.9329 -1.1563 0.3177 39 1 3.7162 -2.5727 2.3415 40 1 3.7170 -1.1143 3.3621 41 1 6.0299 -1.0675 1.7424 42 1 7.8720 -2.4274 1.2479 43 1 7.8717 -3.9683 2.1389 44 1 9.3253 -2.9415 2.1382 45 1 9.3069 -3.7563 6.7662 46 1 11.5588 -3.1555 7.5583 47 1 12.9552 -1.6106 6.2463 48 1 12.1072 -0.6695 4.1361 49 1 9.8600 -1.2724 3.3327 50 1 2.1078 0.6325 2.8837 51 1 -1.6690 0.5112 5.3507 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755552759.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:24 Heat of formation + Delta-G solvation = -66.788941 kcal Electronic energy + Delta-G solvation = -28738.961130 eV Core-core repulsion = 24830.870216 eV Total energy + Delta-G solvation = -3908.090914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.204 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.70184 -40.45845 -39.17076 -38.26962 -36.14785 -34.75197 -33.61349 -32.64833 -31.83949 -31.25273 -30.54317 -27.88737 -27.18663 -25.60288 -24.59420 -23.74458 -23.13645 -22.57023 -21.39679 -20.43791 -19.49533 -19.38767 -18.43912 -17.38068 -17.07781 -16.74060 -16.68877 -16.34899 -16.05978 -15.81071 -15.59192 -15.35056 -15.04503 -14.95257 -14.57446 -14.43249 -14.33432 -14.12942 -14.10909 -13.62398 -13.33004 -13.30852 -12.98257 -12.86901 -12.76876 -12.60852 -12.47479 -12.45278 -12.12930 -12.07808 -12.04938 -11.95470 -11.76802 -11.72525 -11.29941 -11.21398 -10.94192 -10.79477 -10.20359 -9.95571 -9.20958 -9.19013 -7.95270 -5.24004 0.38252 0.46322 1.34680 1.38780 1.43210 1.44560 1.54540 2.51379 2.54244 2.83759 3.36836 3.46964 3.67276 3.67968 3.84632 3.92247 3.93326 3.99529 4.12370 4.26661 4.28261 4.39013 4.39873 4.43971 4.50897 4.62025 4.64232 4.66336 4.75935 4.79320 4.89599 4.99829 5.04077 5.07339 5.10462 5.14909 5.20126 5.30953 5.34278 5.35615 5.40509 5.45414 5.47177 5.59952 5.65848 5.83275 5.83579 5.90998 6.29043 6.33166 6.51092 7.14576 7.16978 7.94396 8.10866 9.26978 Molecular weight = 334.20amu Principal moments of inertia in cm(-1) A = 0.014410 B = 0.002441 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.630761 B =11470.229298 C =12480.806240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 C -0.137 4.137 4 C 0.178 3.822 5 H 0.039 0.961 6 C -0.120 4.120 7 C 0.128 3.872 8 N -0.701 5.701 9 C 0.506 3.494 10 O -0.578 6.578 11 C 0.070 3.930 12 H 0.126 0.874 13 C -0.168 4.168 14 O -0.320 6.320 15 C 0.104 3.896 16 C -0.178 4.178 17 C -0.084 4.084 18 C -0.162 4.162 19 C -0.081 4.081 20 C -0.215 4.215 21 N -0.743 5.743 22 C -0.195 4.195 23 H 0.062 0.938 24 C -0.071 4.071 25 N -0.989 5.989 26 Si 0.942 3.058 27 H -0.278 1.278 28 H -0.309 1.309 29 H -0.258 1.258 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.031 0.969 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.031 0.969 37 H 0.087 0.913 38 H 0.112 0.888 39 H 0.051 0.949 40 H 0.038 0.962 41 H 0.422 0.578 42 H 0.112 0.888 43 H 0.057 0.943 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.148 0.852 47 H 0.149 0.851 48 H 0.155 0.845 49 H 0.152 0.848 50 H 0.362 0.638 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.529 -0.427 -10.136 33.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.194 4.194 4 C 0.069 3.931 5 H 0.057 0.943 6 C -0.158 4.158 7 C 0.004 3.996 8 N -0.356 5.356 9 C 0.291 3.709 10 O -0.457 6.457 11 C 0.011 3.989 12 H 0.144 0.856 13 C -0.225 4.225 14 O -0.234 6.234 15 C 0.060 3.940 16 C -0.197 4.197 17 C -0.102 4.102 18 C -0.180 4.180 19 C -0.099 4.099 20 C -0.233 4.233 21 N -0.386 5.386 22 C -0.326 4.326 23 H 0.080 0.920 24 C -0.261 4.261 25 N -0.642 5.642 26 Si 0.771 3.229 27 H -0.204 1.204 28 H -0.237 1.237 29 H -0.183 1.183 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.051 0.949 37 H 0.105 0.895 38 H 0.130 0.870 39 H 0.069 0.931 40 H 0.057 0.943 41 H 0.260 0.740 42 H 0.130 0.870 43 H 0.076 0.924 44 H 0.110 0.890 45 H 0.137 0.863 46 H 0.166 0.834 47 H 0.167 0.833 48 H 0.172 0.828 49 H 0.169 0.831 50 H 0.195 0.805 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 30.767 -1.106 -9.452 32.205 hybrid contribution -0.469 0.752 1.055 1.378 sum 30.297 -0.355 -8.396 31.441 Atomic orbital electron populations 1.21785 0.97029 1.00115 1.00842 1.21588 0.94977 0.97384 0.98252 1.21745 1.01298 0.95670 1.00681 1.20464 0.92066 0.94589 0.85951 0.94259 1.22020 0.94906 1.01003 0.97886 1.21218 0.78526 1.00217 0.99653 1.45699 1.07194 1.52622 1.30058 1.20828 0.90106 0.78645 0.81275 1.90762 1.71175 1.44840 1.38921 1.22369 0.89884 1.00005 0.86684 0.85641 1.22348 1.03593 1.01481 0.95066 1.86189 1.30601 1.62090 1.44525 1.19388 0.84226 0.96019 0.94397 1.20704 0.98305 1.04857 0.95795 1.21277 0.92153 0.96616 1.00167 1.21477 1.01487 0.99052 0.96023 1.21373 0.94526 0.98054 0.95970 1.21574 0.96743 1.02273 1.02711 1.42791 1.16478 1.48185 1.31182 1.18971 0.92040 1.16006 1.05600 0.91997 1.25337 0.97861 1.03037 0.99879 1.69867 1.20195 1.47926 1.26176 0.85592 0.79759 0.80299 0.77229 1.20440 1.23651 1.18252 0.93683 0.93083 0.95021 0.89500 0.90766 0.92737 0.94946 0.89483 0.87003 0.93084 0.94350 0.73991 0.86986 0.92376 0.89036 0.86286 0.83433 0.83339 0.82782 0.83075 0.80461 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.97 8.26 71.98 0.59 -4.38 16 2 C -0.10 -2.89 2.80 -10.79 -0.03 -2.92 16 3 C -0.14 -3.51 8.68 71.98 0.63 -2.88 16 4 C 0.18 5.79 2.19 44.99 0.10 5.89 16 5 H 0.04 1.44 8.08 -2.38 -0.02 1.42 16 6 C -0.12 -2.71 4.37 30.59 0.13 -2.57 16 7 C 0.13 3.67 5.56 86.38 0.48 4.15 16 8 N -0.70 -14.87 5.52 -463.08 -2.55 -17.43 16 9 C 0.51 14.06 7.18 87.65 0.63 14.69 16 10 O -0.58 -23.85 16.51 15.97 0.26 -23.59 16 11 C 0.07 1.35 2.63 29.85 0.08 1.43 16 12 H 0.13 1.64 6.31 -2.38 -0.02 1.62 16 13 C -0.17 -2.00 9.12 71.98 0.66 -1.35 16 14 O -0.32 -8.62 9.34 -73.46 -0.69 -9.31 16 15 C 0.10 2.31 6.60 22.51 0.15 2.46 16 16 C -0.18 -3.82 9.99 22.37 0.22 -3.60 16 17 C -0.08 -1.31 10.04 22.26 0.22 -1.09 16 18 C -0.16 -2.02 10.04 22.28 0.22 -1.80 16 19 C -0.08 -0.98 10.04 22.25 0.22 -0.75 16 20 C -0.21 -3.25 8.24 22.36 0.18 -3.07 16 21 N -0.74 -31.94 3.49 -322.91 -1.13 -33.07 16 22 C -0.19 -10.66 8.05 84.03 0.68 -9.98 16 23 H 0.06 3.74 7.63 -2.91 -0.02 3.71 16 24 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 25 N -0.99 -64.62 13.97 21.65 0.30 -64.31 16 26 Si 0.94 46.83 27.73 68.60 1.90 48.73 16 27 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 28 H -0.31 -16.10 7.11 99.48 0.71 -15.39 16 29 H -0.26 -11.71 6.52 99.48 0.65 -11.06 16 30 H 0.04 2.00 6.01 -2.39 -0.01 1.98 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 1.44 6.55 -2.39 -0.02 1.43 16 35 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.03 1.03 7.60 -2.39 -0.02 1.01 16 37 H 0.09 1.72 6.71 -2.39 -0.02 1.70 16 38 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.45 7.75 -2.39 -0.02 1.43 16 41 H 0.42 4.62 8.26 -92.70 -0.77 3.86 16 42 H 0.11 0.59 7.92 -2.39 -0.02 0.57 16 43 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.09 0.84 6.91 -2.39 -0.02 0.82 16 45 H 0.12 2.69 8.06 -2.91 -0.02 2.66 16 46 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 47 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 48 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 49 H 0.15 1.45 5.43 -2.91 -0.02 1.44 16 50 H 0.36 15.34 5.66 -92.71 -0.52 14.82 16 51 H 0.25 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -83.79 404.95 3.32 -80.48 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.42 Total: 28.00 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 5.64 Total: -9.50 kcal Atomic # 7 Polarization: -111.43 SS G_CDS: -3.38 Total: -114.81 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.42 Total: -32.89 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 1.90 Total: 48.73 kcal Total: -83.79 3.32 -80.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755552759.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.688 kcal (2) G-P(sol) polarization free energy of solvation -83.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds