Wall clock time and date at job start Tue Mar 31 2020 18:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30837 * 125.90261 * 2 1 4 4 N 1.40084 * 108.20722 * 180.02562 * 3 2 1 5 5 C 1.46499 * 126.03518 * 179.97438 * 4 3 2 6 6 C 1.34943 * 107.92350 * 359.75966 * 4 3 2 7 7 C 1.50699 * 126.12646 * 180.24002 * 6 4 3 8 8 C 1.35317 * 107.74768 * 0.38543 * 6 4 3 9 9 C 1.50698 * 126.03694 * 179.87404 * 8 6 4 10 10 C 1.50706 * 109.47294 * 269.71438 * 9 8 6 11 11 O 1.21279 * 119.99507 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00020 * 180.02562 * 10 9 8 13 13 C 1.46923 * 120.63150 * 359.72421 * 12 10 9 14 14 C 1.52767 * 109.00740 * 233.58251 * 13 12 10 15 15 C 1.53040 * 109.38405 * 305.58916 * 14 13 12 16 16 H 1.09003 * 109.45867 * 301.21821 * 15 14 13 17 17 N 1.46497 * 109.46018 * 181.26088 * 15 14 13 18 18 C 1.36937 * 120.00036 * 84.92922 * 17 15 14 19 19 H 1.07994 * 120.00104 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99743 * 180.02562 * 18 17 15 21 21 N 1.31615 * 120.00417 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99865 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47482 * 89.99874 * 22 20 18 24 24 H 1.48504 * 109.47156 * 210.00203 * 22 20 18 25 25 H 1.48498 * 109.47036 * 329.99564 * 22 20 18 26 26 C 1.53038 * 109.53948 * 61.23711 * 15 14 13 27 27 H 1.09005 * 109.49475 * 58.58551 * 26 15 14 28 28 C 1.52997 * 109.50168 * 178.68400 * 26 15 14 29 29 C 1.46923 * 120.62774 * 179.97438 * 12 10 9 30 30 H 1.09005 * 109.47392 * 269.97905 * 1 2 3 31 31 H 1.09007 * 109.47085 * 29.97347 * 1 2 3 32 32 H 1.08998 * 109.47295 * 149.97241 * 1 2 3 33 33 H 1.09001 * 109.47004 * 89.98063 * 5 4 3 34 34 H 1.08995 * 109.47042 * 209.97803 * 5 4 3 35 35 H 1.09004 * 109.47310 * 329.98229 * 5 4 3 36 36 H 1.08995 * 109.47223 * 270.17485 * 7 6 4 37 37 H 1.08997 * 109.47383 * 30.17496 * 7 6 4 38 38 H 1.09002 * 109.47498 * 150.17240 * 7 6 4 39 39 H 1.09001 * 109.46665 * 149.71819 * 9 8 6 40 40 H 1.09000 * 109.47722 * 29.72151 * 9 8 6 41 41 H 1.08997 * 109.58651 * 353.41526 * 13 12 10 42 42 H 1.08992 * 109.58942 * 113.84358 * 13 12 10 43 43 H 1.08998 * 109.56180 * 185.54829 * 14 13 12 44 44 H 1.09007 * 109.38303 * 65.51528 * 14 13 12 45 45 H 0.97003 * 120.00022 * 264.92966 * 17 15 14 46 46 H 0.97000 * 120.00787 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.47308 * 179.84052 * 28 26 15 48 48 H 1.09007 * 109.47058 * 299.84350 * 28 26 15 49 49 H 1.08998 * 109.46605 * 59.83619 * 28 26 15 50 50 H 1.08995 * 109.59333 * 246.15278 * 29 12 10 51 51 H 1.09000 * 109.58899 * 6.58827 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5007 -0.0013 6 6 3.6142 -0.7154 0.0044 7 6 4.8349 -1.5990 0.0108 8 6 2.3271 -1.1330 -0.0006 9 6 1.8599 -2.5658 -0.0003 10 6 1.7037 -3.0435 -1.4211 11 8 1.9481 -2.2944 -2.3430 12 7 1.2923 -4.3031 -1.6671 13 6 0.9981 -5.2241 -0.5608 14 6 1.8012 -6.5089 -0.7560 15 6 1.5124 -7.0822 -2.1453 16 1 0.4449 -7.2806 -2.2416 17 7 2.2585 -8.3304 -2.3229 18 6 1.7350 -9.5115 -1.8691 19 1 0.7719 -9.5230 -1.3806 20 6 2.4422 -10.6941 -2.0370 21 7 3.6162 -10.6801 -2.6318 22 14 1.7278 -12.3055 -1.4185 23 1 0.9138 -12.9304 -2.4919 24 1 2.8318 -13.2224 -1.0370 25 1 0.8698 -12.0446 -0.2349 26 6 1.9421 -6.0748 -3.2142 27 1 3.0044 -5.8571 -3.1028 28 6 1.6834 -6.6621 -4.6030 29 6 1.1348 -4.7831 -3.0468 30 1 -0.3634 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 5.0831 1.7161 1.0262 34 1 5.6092 0.9978 -0.5151 35 1 4.5562 2.4330 -0.5155 36 1 5.1337 -1.8133 -1.0152 37 1 5.6488 -1.0905 0.5275 38 1 4.6052 -2.5324 0.5249 39 1 0.9012 -2.6352 0.5138 40 1 2.5934 -3.1871 0.5134 41 1 1.2778 -4.7602 0.3850 42 1 -0.0661 -5.4592 -0.5542 43 1 1.5165 -7.2363 0.0042 44 1 2.8649 -6.2876 -0.6676 45 1 3.1234 -8.3202 -2.7620 46 1 4.1103 -11.5065 -2.7495 47 1 1.9870 -5.9432 -5.3639 48 1 2.2577 -7.5810 -4.7217 49 1 0.6213 -6.8808 -4.7128 50 1 0.0819 -4.9817 -3.2467 51 1 1.5047 -4.0284 -3.7407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036123716.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:19 Heat of formation + Delta-G solvation = 41.387433 kcal Electronic energy + Delta-G solvation = -29701.259419 eV Core-core repulsion = 25830.152136 eV Total energy + Delta-G solvation = -3871.107284 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.52989 -39.88895 -37.57886 -34.55240 -34.43090 -33.27496 -32.66625 -31.45473 -30.02368 -29.49945 -29.19519 -26.82721 -25.99878 -25.15117 -24.38579 -22.73335 -21.63558 -20.33732 -19.69102 -19.48204 -18.62174 -17.12878 -16.98469 -16.52522 -15.82687 -15.54901 -15.22238 -14.91092 -14.12026 -14.07639 -14.05287 -13.74816 -13.71075 -13.43868 -13.33396 -13.31046 -13.18880 -12.88421 -12.75289 -12.46267 -12.38011 -12.15155 -12.05805 -12.02031 -11.71600 -11.68268 -11.54400 -11.14723 -10.94198 -10.80544 -10.61390 -10.52611 -10.38820 -10.20659 -9.75675 -9.61996 -9.59898 -9.10959 -8.91385 -8.38358 -8.32287 -6.97451 -5.78959 -3.07468 1.76502 2.37987 2.58695 2.83112 3.30500 3.41105 3.46484 3.48049 4.29666 4.48319 4.56334 4.75559 4.79856 4.88574 4.93960 4.99888 5.09873 5.12279 5.18006 5.27408 5.28665 5.30754 5.36810 5.40568 5.49439 5.51027 5.54759 5.65449 5.67237 5.70959 5.77237 5.83299 5.94641 6.00464 6.09813 6.11649 6.17254 6.31825 6.41676 6.44957 6.55478 6.62405 6.67951 6.82568 6.93253 6.94496 7.06630 7.63049 7.67143 7.67398 8.39368 8.39973 9.50803 10.08726 10.43440 11.43570 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020254 B = 0.002477 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.108358 B =11300.727285 C =11518.154729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.091 3.909 3 N -0.302 5.302 4 N -0.377 5.377 5 C 0.104 3.896 6 C 0.100 3.900 7 C -0.094 4.094 8 C -0.217 4.217 9 C -0.059 4.059 10 C 0.514 3.486 11 O -0.541 6.541 12 N -0.610 5.610 13 C 0.107 3.893 14 C -0.153 4.153 15 C 0.184 3.816 16 H 0.047 0.953 17 N -0.721 5.721 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.904 3.096 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.109 4.109 27 H 0.068 0.932 28 C -0.136 4.136 29 C 0.121 3.879 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.384 0.616 46 H 0.255 0.745 47 H 0.042 0.958 48 H 0.073 0.927 49 H 0.050 0.950 50 H 0.064 0.936 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.422 21.144 6.904 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 N -0.124 5.124 4 N -0.159 5.159 5 C -0.038 4.038 6 C -0.027 4.027 7 C -0.153 4.153 8 C -0.228 4.228 9 C -0.100 4.100 10 C 0.302 3.698 11 O -0.418 6.418 12 N -0.343 5.343 13 C -0.016 4.016 14 C -0.194 4.194 15 C 0.074 3.926 16 H 0.065 0.935 17 N -0.361 5.361 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.219 1.219 25 H -0.208 1.208 26 C -0.129 4.129 27 H 0.086 0.914 28 C -0.194 4.194 29 C -0.002 4.002 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.077 0.923 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.092 0.908 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.207 22.771 6.475 23.704 hybrid contribution 0.097 -1.906 0.267 1.927 sum -1.110 20.865 6.742 21.955 Atomic orbital electron populations 1.20163 0.86926 1.03398 1.02603 1.22089 0.96660 0.90195 0.98581 1.77259 0.86149 1.22473 1.26566 1.48172 1.05474 1.04033 1.58178 1.21781 0.84031 0.94946 1.03014 1.20757 0.96814 0.84513 1.00644 1.20481 0.92845 0.98245 1.03680 1.19012 0.91312 0.94637 1.17841 1.19924 1.03209 0.92307 0.94526 1.20659 0.76492 0.81142 0.91524 1.90667 1.50248 1.54500 1.46360 1.48199 1.66750 1.11655 1.07693 1.21771 1.00097 0.90990 0.88770 1.22608 0.99801 0.94978 1.01984 1.20186 0.95744 0.86280 0.90398 0.93472 1.42414 1.22010 1.01336 1.70341 1.19211 1.01583 0.85171 1.30833 0.91242 1.24724 0.96892 0.97739 1.01561 1.69653 1.13607 1.26575 1.48251 0.86232 0.77769 0.84083 0.78339 1.21788 1.21872 1.20808 1.21742 0.99961 0.94355 0.96860 0.91382 1.21658 1.01909 1.01204 0.94627 1.21670 0.99793 0.96157 0.82599 0.90576 0.90957 0.90594 0.91005 0.89648 0.89393 0.89900 0.91208 0.89557 0.88420 0.88533 0.90458 0.91548 0.90591 0.92260 0.78253 0.93539 0.93902 0.90823 0.93082 0.91815 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.12 36.00 0.36 -0.36 16 2 C 0.09 1.20 7.22 -82.41 -0.59 0.61 16 3 N -0.30 -4.26 12.58 33.67 0.42 -3.83 16 4 N -0.38 -4.53 4.01 -63.89 -0.26 -4.78 16 5 C 0.10 0.76 11.09 59.85 0.66 1.43 16 6 C 0.10 1.20 6.93 -82.27 -0.57 0.63 16 7 C -0.09 -0.84 9.68 36.01 0.35 -0.49 16 8 C -0.22 -2.76 4.59 -105.05 -0.48 -3.24 16 9 C -0.06 -0.65 3.99 -29.03 -0.12 -0.76 16 10 C 0.51 7.29 7.69 -10.98 -0.08 7.20 16 11 O -0.54 -9.68 15.45 5.56 0.09 -9.59 16 12 N -0.61 -8.30 2.98 -173.01 -0.52 -8.82 16 13 C 0.11 1.30 6.31 -3.93 -0.02 1.27 16 14 C -0.15 -2.41 5.64 -26.83 -0.15 -2.56 16 15 C 0.18 3.38 2.19 -67.89 -0.15 3.23 16 16 H 0.05 0.89 8.08 -51.93 -0.42 0.48 16 17 N -0.72 -16.92 4.41 -53.39 -0.24 -17.16 16 18 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -27.37 13.06 55.49 0.72 -26.64 16 22 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 26 C -0.11 -1.78 2.46 -90.48 -0.22 -2.00 16 27 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 28 C -0.14 -2.21 9.02 37.16 0.34 -1.88 16 29 C 0.12 1.75 5.72 -3.69 -0.02 1.73 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.74 7.92 -51.93 -0.41 0.32 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.46 7.67 -51.93 -0.40 0.07 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.46 7.74 -51.93 -0.40 0.05 16 38 H 0.09 0.70 7.14 -51.93 -0.37 0.33 16 39 H 0.10 0.87 7.73 -51.93 -0.40 0.47 16 40 H 0.10 0.91 6.68 -51.93 -0.35 0.57 16 41 H 0.08 0.74 5.93 -51.93 -0.31 0.43 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 45 H 0.38 9.78 7.50 -40.82 -0.31 9.47 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.07 1.40 7.36 -51.93 -0.38 1.02 16 49 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 LS Contribution 406.06 15.07 6.12 6.12 Total: -1.00 -34.19 406.06 -8.36 -42.55 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.73 Total: 7.46 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -0.95 Total: -2.03 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.14 Total: -61.23 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.19 -8.36 -42.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036123716.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.933 kcal (2) G-P(sol) polarization free energy of solvation -34.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds