Wall clock time and date at job start Tue Mar 31 2020 18:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30844 * 125.89711 * 2 1 4 4 N 1.40088 * 108.20001 * 180.25847 * 3 2 1 5 5 C 1.46501 * 126.03318 * 179.69732 * 4 3 2 6 6 C 1.34940 * 107.92777 * 359.72053 * 4 3 2 7 7 C 1.50702 * 126.12521 * 179.97438 * 6 4 3 8 8 C 1.35311 * 107.75086 * 359.97438 * 6 4 3 9 9 C 1.50700 * 126.04750 * 180.02562 * 8 6 4 10 10 C 1.50699 * 109.47273 * 89.99717 * 9 8 6 11 11 O 1.21280 * 119.99808 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99949 * 179.97438 * 10 9 8 13 13 C 1.46923 * 120.63343 * 0.03442 * 12 10 9 14 14 C 1.53195 * 108.77575 * 233.58368 * 13 12 10 15 15 C 1.53046 * 109.30793 * 305.36150 * 14 13 12 16 16 H 1.08998 * 109.45610 * 181.38442 * 15 14 13 17 17 N 1.46496 * 109.46123 * 301.35926 * 15 14 13 18 18 C 1.36949 * 119.99616 * 275.00303 * 17 15 14 19 19 H 1.07999 * 119.99880 * 359.97438 * 18 17 15 20 20 C 1.38805 * 119.99695 * 179.97438 * 18 17 15 21 21 N 1.31620 * 119.99958 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00298 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.47285 * 89.99991 * 22 20 18 24 24 H 1.48502 * 109.47443 * 209.99833 * 22 20 18 25 25 H 1.48503 * 109.47224 * 330.00176 * 22 20 18 26 26 C 1.53043 * 109.53700 * 61.36640 * 15 14 13 27 27 H 1.08998 * 109.49941 * 58.61981 * 26 15 14 28 28 C 1.53004 * 109.49393 * 178.68072 * 26 15 14 29 29 C 1.46931 * 120.62926 * 180.02562 * 12 10 9 30 30 H 1.09008 * 109.47366 * 270.20926 * 1 2 3 31 31 H 1.09000 * 109.47528 * 30.21082 * 1 2 3 32 32 H 1.09001 * 109.47385 * 150.21634 * 1 2 3 33 33 H 1.08998 * 109.47403 * 270.02596 * 5 4 3 34 34 H 1.08997 * 109.47477 * 30.02525 * 5 4 3 35 35 H 1.09005 * 109.47030 * 150.02478 * 5 4 3 36 36 H 1.09004 * 109.47230 * 270.01888 * 7 6 4 37 37 H 1.08996 * 109.47305 * 30.02613 * 7 6 4 38 38 H 1.09004 * 109.47074 * 150.02376 * 7 6 4 39 39 H 1.09002 * 109.46687 * 329.99986 * 9 8 6 40 40 H 1.09001 * 109.47348 * 210.00490 * 9 8 6 41 41 H 1.08996 * 109.59375 * 113.79430 * 13 12 10 42 42 H 1.09006 * 109.58686 * 353.36430 * 13 12 10 43 43 H 1.08990 * 109.49959 * 185.41234 * 14 13 12 44 44 H 1.08999 * 109.49609 * 65.30943 * 14 13 12 45 45 H 0.96998 * 120.00391 * 94.99746 * 17 15 14 46 46 H 0.96996 * 120.00018 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.46682 * 60.00080 * 28 26 15 48 48 H 1.08999 * 109.46678 * 179.97438 * 28 26 15 49 49 H 1.08991 * 109.47219 * 299.99834 * 28 26 15 50 50 H 1.09001 * 109.58511 * 6.62918 * 29 12 10 51 51 H 1.08996 * 109.70113 * 246.27382 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 6 4.7898 1.5008 -0.0143 6 6 3.6141 -0.7153 -0.0033 7 6 4.8349 -1.5988 -0.0084 8 6 2.3271 -1.1330 0.0047 9 6 1.8598 -2.5657 0.0107 10 6 1.7118 -3.0399 1.4335 11 8 1.9609 -2.2883 2.3521 12 7 1.3018 -4.2989 1.6850 13 6 0.9961 -5.2209 0.5828 14 6 -0.4144 -5.7828 0.7868 15 6 -0.5119 -6.4125 2.1784 16 1 -1.5071 -6.8349 2.3169 17 7 0.4906 -7.4731 2.3055 18 6 0.2109 -8.7368 1.8577 19 1 -0.7488 -8.9514 1.4114 20 6 1.1610 -9.7416 1.9776 21 7 0.8920 -10.9563 1.5478 22 14 2.8212 -9.3702 2.7491 23 1 2.7501 -9.6046 4.2138 24 1 3.8528 -10.2582 2.1553 25 1 3.1807 -7.9525 2.4915 26 6 -0.2594 -5.3425 3.2431 27 1 -0.9900 -4.5410 3.1338 28 6 -0.3895 -5.9659 4.6343 29 6 1.1523 -4.7754 3.0668 30 1 -0.3634 0.0038 1.0277 31 1 -0.3634 0.8881 -0.5171 32 1 -0.3634 -0.8919 -0.5105 33 1 5.0771 1.7137 -1.0440 34 1 4.5591 2.4343 0.4989 35 1 5.6121 0.9992 0.4961 36 1 5.1238 -1.8137 -1.0373 37 1 5.6538 -1.0901 0.5003 38 1 4.6102 -2.5320 0.5082 39 1 2.5905 -3.1883 -0.5056 40 1 0.8983 -2.6365 -0.4978 41 1 1.7177 -6.0377 0.5787 42 1 1.0422 -4.6850 -0.3654 43 1 -0.6173 -6.5402 0.0298 44 1 -1.1431 -4.9769 0.7004 45 1 1.3525 -7.2804 2.7066 46 1 1.5560 -11.6584 1.6313 47 1 0.3421 -6.7665 4.7435 48 1 -0.2092 -5.2035 5.3922 49 1 -1.3935 -6.3716 4.7582 50 1 1.3016 -3.9457 3.7577 51 1 1.8868 -5.5552 3.2681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036123718.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:24 Heat of formation + Delta-G solvation = 48.347237 kcal Electronic energy + Delta-G solvation = -30251.344835 eV Core-core repulsion = 26380.539351 eV Total energy + Delta-G solvation = -3870.805484 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.52344 -39.94583 -37.75757 -34.43195 -34.34261 -33.25299 -32.71502 -31.49381 -30.00597 -29.73200 -29.41568 -26.85073 -26.04608 -25.28767 -24.31031 -23.14142 -21.66227 -20.34428 -19.64149 -19.17864 -18.13570 -17.86390 -16.93804 -16.54595 -15.81218 -15.52566 -15.30092 -14.71033 -14.45626 -14.07537 -14.06892 -13.83779 -13.64062 -13.57570 -13.38218 -13.34766 -13.03584 -12.94240 -12.74514 -12.60177 -12.38143 -12.26883 -12.09259 -11.98919 -11.83513 -11.61229 -11.49246 -11.39442 -11.01097 -10.92403 -10.58676 -10.54670 -10.50408 -10.22785 -9.84153 -9.58325 -9.55834 -9.10728 -8.97005 -8.31138 -8.28192 -7.29496 -5.80633 -3.15672 1.76578 2.37581 2.60942 2.86796 3.31967 3.35439 3.35855 3.41968 4.30149 4.47611 4.54647 4.78074 4.82408 4.84608 4.90966 5.03662 5.09081 5.12171 5.16759 5.20809 5.25455 5.27936 5.31758 5.38065 5.45994 5.53915 5.59915 5.61674 5.65084 5.67036 5.78505 5.81992 5.90625 5.95828 5.97455 6.10216 6.10302 6.23230 6.32209 6.39364 6.50345 6.58926 6.63997 6.68052 6.76197 6.92348 6.93946 7.67715 7.70095 7.96308 8.38693 8.43843 9.17142 9.89797 10.09842 11.37877 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017097 B = 0.003094 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.297508 B = 9046.833757 C = 9664.302002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.092 3.908 3 N -0.302 5.302 4 N -0.377 5.377 5 C 0.104 3.896 6 C 0.098 3.902 7 C -0.093 4.093 8 C -0.215 4.215 9 C -0.059 4.059 10 C 0.513 3.487 11 O -0.544 6.544 12 N -0.607 5.607 13 C 0.112 3.888 14 C -0.150 4.150 15 C 0.185 3.815 16 H 0.059 0.941 17 N -0.744 5.744 18 C -0.239 4.239 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.878 3.122 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.278 1.278 26 C -0.111 4.111 27 H 0.071 0.929 28 C -0.138 4.138 29 C 0.119 3.881 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.063 0.937 48 H 0.045 0.955 49 H 0.058 0.942 50 H 0.085 0.915 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.313 21.510 -4.548 22.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 N -0.125 5.125 4 N -0.159 5.159 5 C -0.038 4.038 6 C -0.029 4.029 7 C -0.151 4.151 8 C -0.226 4.226 9 C -0.100 4.100 10 C 0.301 3.699 11 O -0.421 6.421 12 N -0.340 5.340 13 C -0.011 4.011 14 C -0.191 4.191 15 C 0.075 3.925 16 H 0.077 0.923 17 N -0.387 5.387 18 C -0.369 4.369 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.582 5.582 22 Si 0.709 3.291 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.205 1.205 26 C -0.131 4.131 27 H 0.089 0.911 28 C -0.196 4.196 29 C -0.004 4.004 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.194 0.806 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.064 0.936 49 H 0.077 0.923 50 H 0.103 0.897 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.528 23.072 -4.152 23.876 hybrid contribution 1.365 -0.851 0.490 1.682 sum 5.893 22.221 -3.662 23.279 Atomic orbital electron populations 1.20175 0.86875 1.02967 1.03142 1.22099 0.96695 0.90186 0.98459 1.77270 0.86087 1.22438 1.26661 1.48166 1.05503 1.04026 1.58167 1.21776 0.84053 0.94899 1.03025 1.20734 0.96781 0.84519 1.00904 1.20464 0.92975 0.98574 1.03091 1.19021 0.91277 0.94685 1.17622 1.19922 1.03256 0.92261 0.94534 1.20649 0.76750 0.81010 0.91500 1.90658 1.50543 1.54265 1.46648 1.48180 1.66200 1.11935 1.07708 1.21749 0.98568 0.92689 0.88077 1.22496 0.95039 0.99846 1.01698 1.20180 0.93963 0.87610 0.90743 0.92263 1.42848 1.14607 1.07256 1.74032 1.19058 1.01098 0.84193 1.32541 0.89168 1.24633 0.97759 0.95468 1.01111 1.69689 1.34954 1.01166 1.52355 0.86664 0.85690 0.77192 0.79569 1.21100 1.21808 1.20484 1.21740 0.96439 0.98213 0.96731 0.91079 1.21676 1.02717 1.00383 0.94834 1.21570 0.96993 0.99050 0.82768 0.90407 0.91035 0.90528 0.90960 0.89435 0.89727 0.90111 0.91153 0.89677 0.88669 0.88276 0.90320 0.90770 0.90268 0.92868 0.80599 0.93091 0.91775 0.93588 0.92338 0.89695 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 10.26 36.00 0.37 -0.40 16 2 C 0.09 1.25 7.22 -82.40 -0.59 0.65 16 3 N -0.30 -4.34 12.58 33.67 0.42 -3.92 16 4 N -0.38 -4.60 4.01 -63.89 -0.26 -4.85 16 5 C 0.10 0.77 11.27 59.85 0.67 1.44 16 6 C 0.10 1.19 6.93 -82.27 -0.57 0.62 16 7 C -0.09 -0.82 9.72 36.01 0.35 -0.47 16 8 C -0.21 -2.82 4.59 -105.05 -0.48 -3.30 16 9 C -0.06 -0.69 3.95 -29.04 -0.11 -0.80 16 10 C 0.51 7.66 7.69 -10.99 -0.08 7.57 16 11 O -0.54 -9.99 15.45 5.56 0.09 -9.91 16 12 N -0.61 -9.02 2.97 -172.79 -0.51 -9.53 16 13 C 0.11 1.58 6.08 -3.71 -0.02 1.56 16 14 C -0.15 -2.26 5.78 -26.61 -0.15 -2.41 16 15 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 16 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 17 N -0.74 -15.85 3.44 -53.38 -0.18 -16.03 16 18 C -0.24 -6.23 10.41 -15.06 -0.16 -6.38 16 19 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -28.26 13.97 55.49 0.78 -27.49 16 22 Si 0.88 21.27 27.73 -169.99 -4.71 16.55 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 26 C -0.11 -1.69 2.67 -90.52 -0.24 -1.93 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 28 C -0.14 -2.06 9.05 37.16 0.34 -1.73 16 29 C 0.12 1.88 5.41 -3.73 -0.02 1.86 16 30 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.67 7.25 -51.93 -0.38 0.30 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.46 7.05 -51.93 -0.37 0.09 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.51 7.08 -51.93 -0.37 0.14 16 38 H 0.08 0.83 7.77 -51.93 -0.40 0.43 16 39 H 0.10 0.95 7.57 -51.93 -0.39 0.56 16 40 H 0.10 0.98 6.80 -51.93 -0.35 0.63 16 41 H 0.08 1.30 7.74 -51.93 -0.40 0.90 16 42 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.36 7.75 3.79 -40.82 -0.15 7.60 16 46 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.06 1.08 7.54 -51.93 -0.39 0.69 16 48 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 50 H 0.08 1.38 7.01 -51.93 -0.36 1.01 16 51 H 0.06 1.09 6.64 -51.93 -0.35 0.74 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -34.39 398.01 -7.83 -42.22 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -8.46 Total: 7.58 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -0.98 Total: -0.62 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.24 Total: -61.82 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.71 Total: 16.55 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.39 -7.83 -42.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036123718.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.567 kcal (2) G-P(sol) polarization free energy of solvation -34.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds