Wall clock time and date at job start Tue Mar 31 2020 18:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38044 * 126.29304 * 2 1 4 4 C 1.47432 * 126.41404 * 0.02562 * 3 2 1 5 5 O 1.21607 * 119.99634 * 352.52825 * 4 3 2 6 6 N 1.34779 * 120.00018 * 172.53139 * 4 3 2 7 7 C 1.46492 * 120.00021 * 3.54376 * 6 4 3 8 8 C 1.46497 * 119.99670 * 183.54382 * 6 4 3 9 9 C 1.53004 * 109.46679 * 91.30580 * 8 6 4 10 10 N 1.46906 * 112.84715 * 174.31728 * 9 8 6 11 11 C 1.46900 * 111.00128 * 301.79385 * 10 9 8 12 12 C 1.46903 * 110.99812 * 65.74361 * 10 9 8 13 13 C 1.53781 * 113.61673 * 43.12470 * 9 8 6 14 14 C 1.53949 * 87.02013 * 220.04353 * 13 9 8 15 15 C 1.53775 * 113.61886 * 305.51200 * 9 8 6 16 16 C 1.41289 * 107.17296 * 179.97438 * 3 2 1 17 17 N 1.30450 * 108.01659 * 359.73868 * 16 3 2 18 18 N 1.34258 * 126.29012 * 179.97438 * 2 1 3 19 19 C 1.46501 * 125.75418 * 0.02562 * 18 2 1 20 20 C 1.50694 * 109.47255 * 89.99787 * 19 18 2 21 21 H 1.07995 * 120.00504 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99648 * 179.72893 * 20 19 18 23 23 N 1.31506 * 120.00378 * 0.26921 * 22 20 19 24 24 Si 1.86802 * 119.99755 * 180.27620 * 22 20 19 25 25 H 1.48495 * 109.47557 * 89.99348 * 24 22 20 26 26 H 1.48505 * 109.46940 * 209.99759 * 24 22 20 27 27 H 1.48497 * 109.47176 * 329.99300 * 24 22 20 28 28 H 1.09009 * 109.47154 * 270.02688 * 1 2 3 29 29 H 1.09001 * 109.47259 * 30.02059 * 1 2 3 30 30 H 1.08997 * 109.47574 * 150.02660 * 1 2 3 31 31 H 1.09007 * 109.47281 * 59.56988 * 7 6 4 32 32 H 1.08996 * 109.47102 * 179.57358 * 7 6 4 33 33 H 1.09002 * 109.47261 * 299.57356 * 7 6 4 34 34 H 1.09001 * 109.46935 * 211.29861 * 8 6 4 35 35 H 1.08993 * 109.47592 * 331.30820 * 8 6 4 36 36 H 1.08999 * 109.46988 * 65.56298 * 11 10 9 37 37 H 1.08999 * 109.47044 * 185.56073 * 11 10 9 38 38 H 1.09000 * 109.47007 * 305.55943 * 11 10 9 39 39 H 1.09003 * 109.46828 * 60.00200 * 12 10 9 40 40 H 1.09000 * 109.47246 * 179.97438 * 12 10 9 41 41 H 1.08997 * 109.47459 * 300.00058 * 12 10 9 42 42 H 1.08999 * 113.61164 * 334.56340 * 13 9 8 43 43 H 1.09004 * 113.61139 * 105.46881 * 13 9 8 44 44 H 1.09003 * 113.54170 * 270.81446 * 14 13 9 45 45 H 1.08998 * 113.74590 * 139.94132 * 14 13 9 46 46 H 1.08999 * 113.61974 * 254.53729 * 15 9 8 47 47 H 1.09004 * 113.61161 * 25.35211 * 15 9 8 48 48 H 1.07997 * 125.98770 * 179.97438 * 16 3 2 49 49 H 1.09005 * 109.46959 * 329.99439 * 19 18 2 50 50 H 1.09006 * 109.47219 * 209.99830 * 19 18 2 51 51 H 0.96996 * 120.00229 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.7080 2.7904 -0.1359 6 7 2.7906 3.5077 0.1522 7 6 4.2173 3.1870 0.2386 8 6 2.3471 4.9018 0.2306 9 6 2.1110 5.2801 1.6942 10 7 1.7914 6.7031 1.8711 11 6 2.8660 7.5537 1.3421 12 6 0.5029 7.0346 1.2484 13 6 3.2064 4.7719 2.6464 14 6 2.0779 4.4474 3.6421 15 6 1.1429 4.3359 2.4262 16 6 3.6590 0.6498 0.0006 17 7 3.6339 -0.6544 0.0066 18 7 2.3016 -1.0822 0.0005 19 6 1.8500 -2.4758 0.0006 20 6 1.6956 -2.9539 -1.4201 21 1 1.9118 -2.2864 -2.2411 22 6 1.2831 -4.2453 -1.6719 23 7 1.0194 -5.0581 -0.6723 24 14 1.0992 -4.8404 -3.4330 25 1 2.3838 -5.4248 -3.8949 26 1 0.0338 -5.8730 -3.4978 27 1 0.7334 -3.6965 -4.3064 28 1 -0.3634 0.0005 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 4.5299 2.6729 -0.6704 32 1 4.7905 4.1072 0.3509 33 1 4.3933 2.5420 1.0995 34 1 3.1130 5.5511 -0.1935 35 1 1.4195 5.0201 -0.3294 36 1 2.9308 7.4272 0.2614 37 1 2.6508 8.5969 1.5736 38 1 3.8135 7.2681 1.7989 39 1 -0.2864 6.4394 1.7077 40 1 0.2905 8.0936 1.3945 41 1 0.5481 6.8166 0.1814 42 1 3.7304 3.8900 2.2778 43 1 3.8826 5.5542 2.9912 44 1 1.8325 5.2755 4.3070 45 1 2.2182 3.5057 4.1728 46 1 0.1557 4.7665 2.5936 47 1 1.1007 3.3350 1.9965 48 1 4.5449 1.2676 0.0004 49 1 0.8912 -2.5470 0.5142 50 1 2.5845 -3.0958 0.5148 51 1 0.7296 -5.9667 -0.8494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890118447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:20 Heat of formation + Delta-G solvation = 89.497292 kcal Electronic energy + Delta-G solvation = -30445.991648 eV Core-core repulsion = 26576.970564 eV Total energy + Delta-G solvation = -3869.021084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.15119 -40.36715 -38.35383 -35.46552 -34.94826 -33.84471 -32.08361 -31.22230 -29.25455 -28.25351 -27.26977 -26.99108 -26.18561 -25.06660 -24.55598 -23.39052 -22.23959 -21.23105 -20.05401 -18.45350 -18.32787 -16.87753 -16.65199 -16.59846 -16.16559 -15.42039 -15.31397 -15.00372 -14.68458 -14.55001 -14.30894 -13.85488 -13.76871 -13.53593 -13.38037 -13.26037 -13.08254 -12.59672 -12.51384 -12.21899 -12.10496 -12.05257 -11.99176 -11.97355 -11.66154 -11.49959 -11.35795 -11.15222 -11.08953 -10.89393 -10.81692 -10.42730 -10.36599 -10.15755 -10.06504 -9.93721 -9.37583 -9.07631 -8.71861 -8.56815 -8.17358 -7.87849 -6.34255 -4.42206 2.17542 2.81402 3.03026 3.17805 3.24197 3.27571 3.41936 3.70925 3.85789 4.23782 4.33176 4.66714 4.80276 4.85724 4.91510 4.95363 5.00831 5.01945 5.13886 5.19468 5.27371 5.30805 5.32298 5.41604 5.44799 5.50129 5.56354 5.60758 5.68240 5.72043 5.77805 5.80578 5.88222 5.91509 5.94562 6.07865 6.08313 6.28868 6.33227 6.48022 6.56192 6.62146 6.79245 6.80449 6.89674 6.99204 7.17238 7.55862 7.56737 7.76873 7.79437 8.38753 8.56424 8.64081 9.24861 10.73913 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.024308 B = 0.002696 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.587194 B =10384.983671 C =10505.315975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.166 3.834 3 C -0.331 4.331 4 C 0.605 3.395 5 O -0.551 6.551 6 N -0.612 5.612 7 C 0.073 3.927 8 C 0.104 3.896 9 C 0.066 3.934 10 N -0.516 5.516 11 C 0.021 3.979 12 C 0.021 3.979 13 C -0.130 4.130 14 C -0.131 4.131 15 C -0.122 4.122 16 C 0.036 3.964 17 N -0.298 5.298 18 N -0.314 5.314 19 C 0.251 3.749 20 C -0.540 4.540 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.027 0.973 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.093 0.907 48 H 0.193 0.807 49 H 0.056 0.944 50 H 0.057 0.943 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.790 22.367 5.488 23.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.028 3.972 3 C -0.347 4.347 4 C 0.398 3.602 5 O -0.430 6.430 6 N -0.346 5.346 7 C -0.070 4.070 8 C -0.021 4.021 9 C -0.025 4.025 10 N -0.240 5.240 11 C -0.127 4.127 12 C -0.127 4.127 13 C -0.167 4.167 14 C -0.168 4.168 15 C -0.159 4.159 16 C -0.150 4.150 17 N -0.118 5.118 18 N -0.090 5.090 19 C 0.134 3.866 20 C -0.579 4.579 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.734 3.266 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.093 0.907 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.109 0.891 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.112 0.888 48 H 0.209 0.791 49 H 0.074 0.926 50 H 0.075 0.925 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.752 21.150 5.980 22.297 hybrid contribution -0.267 0.155 -1.839 1.865 sum 3.485 21.305 4.141 21.982 Atomic orbital electron populations 1.20635 0.86945 1.05025 1.03175 1.21451 0.94889 0.86510 0.94317 1.19629 0.93197 0.92416 1.29432 1.17304 0.84623 0.83882 0.74388 1.90686 1.17003 1.84008 1.51300 1.47375 1.06778 1.05786 1.74634 1.22312 0.81212 1.01568 1.01883 1.21756 1.01129 0.82018 0.97234 1.22674 0.98774 0.87846 0.93194 1.62102 1.02816 1.02119 1.56914 1.22395 0.95202 0.97499 0.97645 1.22391 0.91644 1.01388 0.97242 1.23142 0.96050 1.00938 0.96588 1.22702 0.96639 1.01109 0.96353 1.23034 0.97211 0.99759 0.95927 1.24782 0.97260 0.92668 1.00328 1.77160 0.98595 1.12522 1.23496 1.49392 1.02600 1.08268 1.48773 1.19840 0.96380 0.71002 0.99397 1.21253 1.47558 0.98044 0.91028 0.91676 1.24922 0.94431 0.95998 0.98284 1.69908 1.44551 1.07089 1.31126 0.86329 0.78096 0.78650 0.83497 1.20246 1.20772 1.19583 0.90652 0.88446 0.89897 0.91246 0.91035 0.91113 0.91114 0.89727 0.95430 0.91391 0.91284 0.90941 0.91510 0.95233 0.89066 0.91576 0.90135 0.92108 0.91606 0.88827 0.79090 0.92632 0.92536 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 9.42 36.01 0.34 -1.47 16 2 C 0.17 3.37 7.00 -81.60 -0.57 2.80 16 3 C -0.33 -6.03 6.04 -105.07 -0.63 -6.66 16 4 C 0.61 9.89 5.98 -12.52 -0.07 9.82 16 5 O -0.55 -10.14 13.15 5.27 0.07 -10.07 16 6 N -0.61 -7.59 2.26 -182.85 -0.41 -8.01 16 7 C 0.07 0.68 6.59 59.84 0.39 1.08 16 8 C 0.10 1.15 4.46 -4.04 -0.02 1.13 16 9 C 0.07 0.69 0.42 -130.79 -0.06 0.63 16 10 N -0.52 -4.85 4.81 -234.45 -1.13 -5.98 16 11 C 0.02 0.15 9.00 60.06 0.54 0.69 16 12 C 0.02 0.19 9.21 60.07 0.55 0.74 16 13 C -0.13 -1.28 6.88 -25.83 -0.18 -1.45 16 14 C -0.13 -1.42 8.00 -25.83 -0.21 -1.62 16 15 C -0.12 -1.51 6.82 -25.92 -0.18 -1.68 16 16 C 0.04 0.62 9.91 -16.98 -0.17 0.45 16 17 N -0.30 -6.37 12.50 30.86 0.39 -5.98 16 18 N -0.31 -7.08 3.56 -57.77 -0.21 -7.29 16 19 C 0.25 6.25 5.78 -5.20 -0.03 6.22 16 20 C -0.54 -14.57 9.39 -34.44 -0.32 -14.90 16 21 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 23 N -0.89 -24.59 13.29 55.43 0.74 -23.85 16 24 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 29 H 0.10 1.74 6.38 -51.93 -0.33 1.41 16 30 H 0.08 1.57 7.70 -51.93 -0.40 1.17 16 31 H 0.07 0.65 6.35 -51.93 -0.33 0.32 16 32 H 0.07 0.49 7.77 -51.93 -0.40 0.08 16 33 H 0.07 0.66 5.85 -51.93 -0.30 0.36 16 34 H 0.07 0.66 6.36 -51.93 -0.33 0.33 16 35 H 0.08 1.11 6.33 -51.93 -0.33 0.78 16 36 H 0.03 0.20 6.75 -51.93 -0.35 -0.15 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.48 6.97 -51.93 -0.36 0.12 16 39 H 0.07 0.70 6.61 -51.93 -0.34 0.36 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.03 0.27 6.88 -51.93 -0.36 -0.08 16 42 H 0.09 0.91 4.66 -51.93 -0.24 0.67 16 43 H 0.07 0.59 7.15 -51.93 -0.37 0.22 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.07 0.82 6.65 -51.93 -0.35 0.48 16 47 H 0.09 1.41 4.94 -51.93 -0.26 1.15 16 48 H 0.19 2.43 4.19 -52.49 -0.22 2.21 16 49 H 0.06 1.38 7.62 -51.93 -0.40 0.98 16 50 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 51 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -30.36 384.91 -8.23 -38.59 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -7.75 Total: 3.47 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -0.71 Total: -2.50 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.62 Total: -51.10 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.36 -8.23 -38.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890118447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.092 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds