Wall clock time and date at job start Tue Mar 31 2020 18:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38044 * 126.29304 * 2 1 4 4 C 1.47432 * 126.41404 * 0.02562 * 3 2 1 5 5 O 1.21607 * 119.99634 * 352.52825 * 4 3 2 6 6 N 1.34779 * 120.00018 * 172.53139 * 4 3 2 7 7 C 1.46492 * 120.00021 * 3.54376 * 6 4 3 8 8 C 1.46497 * 119.99670 * 183.54382 * 6 4 3 9 9 C 1.53004 * 109.46679 * 91.30580 * 8 6 4 10 10 N 1.46906 * 112.84715 * 174.31728 * 9 8 6 11 11 C 1.46900 * 111.00128 * 301.79385 * 10 9 8 12 12 C 1.46903 * 110.99812 * 65.74361 * 10 9 8 13 13 C 1.53781 * 113.61673 * 43.12470 * 9 8 6 14 14 C 1.53949 * 87.02013 * 220.04353 * 13 9 8 15 15 C 1.53775 * 113.61886 * 305.51200 * 9 8 6 16 16 C 1.41289 * 107.17296 * 179.97438 * 3 2 1 17 17 N 1.30450 * 108.01659 * 359.73868 * 16 3 2 18 18 N 1.34258 * 126.29012 * 179.97438 * 2 1 3 19 19 C 1.46501 * 125.75418 * 0.02562 * 18 2 1 20 20 C 1.50694 * 109.47255 * 89.99787 * 19 18 2 21 21 H 1.07995 * 120.00504 * 359.97438 * 20 19 18 22 22 C 1.37882 * 119.99648 * 179.72893 * 20 19 18 23 23 N 1.31506 * 120.00378 * 0.26921 * 22 20 19 24 24 Si 1.86802 * 119.99755 * 180.27620 * 22 20 19 25 25 H 1.48495 * 109.47557 * 89.99348 * 24 22 20 26 26 H 1.48505 * 109.46940 * 209.99759 * 24 22 20 27 27 H 1.48497 * 109.47176 * 329.99300 * 24 22 20 28 28 H 1.09009 * 109.47154 * 270.02688 * 1 2 3 29 29 H 1.09001 * 109.47259 * 30.02059 * 1 2 3 30 30 H 1.08997 * 109.47574 * 150.02660 * 1 2 3 31 31 H 1.09007 * 109.47281 * 59.56988 * 7 6 4 32 32 H 1.08996 * 109.47102 * 179.57358 * 7 6 4 33 33 H 1.09002 * 109.47261 * 299.57356 * 7 6 4 34 34 H 1.09001 * 109.46935 * 211.29861 * 8 6 4 35 35 H 1.08993 * 109.47592 * 331.30820 * 8 6 4 36 36 H 1.08999 * 109.46988 * 65.56298 * 11 10 9 37 37 H 1.08999 * 109.47044 * 185.56073 * 11 10 9 38 38 H 1.09000 * 109.47007 * 305.55943 * 11 10 9 39 39 H 1.09003 * 109.46828 * 60.00200 * 12 10 9 40 40 H 1.09000 * 109.47246 * 179.97438 * 12 10 9 41 41 H 1.08997 * 109.47459 * 300.00058 * 12 10 9 42 42 H 1.08999 * 113.61164 * 334.56340 * 13 9 8 43 43 H 1.09004 * 113.61139 * 105.46881 * 13 9 8 44 44 H 1.09003 * 113.54170 * 270.81446 * 14 13 9 45 45 H 1.08998 * 113.74590 * 139.94132 * 14 13 9 46 46 H 1.08999 * 113.61974 * 254.53729 * 15 9 8 47 47 H 1.09004 * 113.61161 * 25.35211 * 15 9 8 48 48 H 1.07997 * 125.98770 * 179.97438 * 16 3 2 49 49 H 1.09005 * 109.46959 * 329.99439 * 19 18 2 50 50 H 1.09006 * 109.47219 * 209.99830 * 19 18 2 51 51 H 0.96996 * 120.00229 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.7080 2.7904 -0.1359 6 7 2.7906 3.5077 0.1522 7 6 4.2173 3.1870 0.2386 8 6 2.3471 4.9018 0.2306 9 6 2.1110 5.2801 1.6942 10 7 1.7914 6.7031 1.8711 11 6 2.8660 7.5537 1.3421 12 6 0.5029 7.0346 1.2484 13 6 3.2064 4.7719 2.6464 14 6 2.0779 4.4474 3.6421 15 6 1.1429 4.3359 2.4262 16 6 3.6590 0.6498 0.0006 17 7 3.6339 -0.6544 0.0066 18 7 2.3016 -1.0822 0.0005 19 6 1.8500 -2.4758 0.0006 20 6 1.6956 -2.9539 -1.4201 21 1 1.9118 -2.2864 -2.2411 22 6 1.2831 -4.2453 -1.6719 23 7 1.0194 -5.0581 -0.6723 24 14 1.0992 -4.8404 -3.4330 25 1 2.3838 -5.4248 -3.8949 26 1 0.0338 -5.8730 -3.4978 27 1 0.7334 -3.6965 -4.3064 28 1 -0.3634 0.0005 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 4.5299 2.6729 -0.6704 32 1 4.7905 4.1072 0.3509 33 1 4.3933 2.5420 1.0995 34 1 3.1130 5.5511 -0.1935 35 1 1.4195 5.0201 -0.3294 36 1 2.9308 7.4272 0.2614 37 1 2.6508 8.5969 1.5736 38 1 3.8135 7.2681 1.7989 39 1 -0.2864 6.4394 1.7077 40 1 0.2905 8.0936 1.3945 41 1 0.5481 6.8166 0.1814 42 1 3.7304 3.8900 2.2778 43 1 3.8826 5.5542 2.9912 44 1 1.8325 5.2755 4.3070 45 1 2.2182 3.5057 4.1728 46 1 0.1557 4.7665 2.5936 47 1 1.1007 3.3350 1.9965 48 1 4.5449 1.2676 0.0004 49 1 0.8912 -2.5470 0.5142 50 1 2.5845 -3.0958 0.5148 51 1 0.7296 -5.9667 -0.8494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890118447.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:19 Heat of formation + Delta-G solvation = 70.498691 kcal Electronic energy + Delta-G solvation = -30446.815489 eV Core-core repulsion = 26576.970564 eV Total energy + Delta-G solvation = -3869.844925 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.48759 -41.48678 -39.51073 -36.54183 -35.84167 -35.66221 -33.81197 -32.78042 -30.42345 -28.97522 -28.72596 -28.41451 -27.32174 -25.92983 -25.61807 -25.05127 -23.16895 -22.52431 -21.45681 -19.88311 -19.18725 -18.86702 -18.06061 -17.53425 -17.14200 -16.91441 -16.52298 -16.28702 -15.97688 -15.72942 -15.34680 -15.14281 -14.69788 -14.61100 -14.41458 -14.28554 -14.23644 -14.15701 -13.98435 -13.71043 -13.63010 -13.17429 -12.96532 -12.89982 -12.79202 -12.73788 -12.68908 -12.46347 -12.41235 -12.28703 -11.98542 -11.86623 -11.71942 -11.66406 -11.28033 -10.93394 -10.77827 -10.70550 -10.27072 -9.97463 -9.49941 -8.94416 -8.39293 -6.55895 0.67924 1.33773 1.36046 1.38578 1.47797 1.67733 2.09426 2.31303 2.51964 2.92619 2.96615 3.47530 3.72256 3.76354 3.83801 3.94497 4.01449 4.04946 4.19196 4.24643 4.32457 4.33536 4.46466 4.50427 4.54685 4.61869 4.64941 4.72049 4.74189 4.77371 4.79733 4.83395 4.89905 4.92190 4.97630 5.00413 5.06148 5.06911 5.14748 5.15312 5.20583 5.41710 5.47558 5.48137 5.61570 5.71654 5.73652 6.04876 6.10863 6.21841 6.43288 6.53539 6.85054 7.15336 7.32231 8.68600 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.024308 B = 0.002696 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.587194 B =10384.983671 C =10505.315975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.144 3.856 3 C -0.329 4.329 4 C 0.604 3.396 5 O -0.578 6.578 6 N -0.601 5.601 7 C 0.059 3.941 8 C 0.105 3.895 9 C 0.076 3.924 10 N -0.522 5.522 11 C 0.019 3.981 12 C 0.023 3.977 13 C -0.120 4.120 14 C -0.128 4.128 15 C -0.132 4.132 16 C 0.058 3.942 17 N -0.337 5.337 18 N -0.338 5.338 19 C 0.268 3.732 20 C -0.556 4.556 21 H 0.051 0.949 22 C 0.024 3.976 23 N -0.916 5.916 24 Si 0.971 3.029 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.032 0.968 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.083 0.917 41 H 0.024 0.976 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.240 0.760 49 H 0.048 0.952 50 H 0.032 0.968 51 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.591 24.847 5.023 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.008 3.992 3 C -0.344 4.344 4 C 0.395 3.605 5 O -0.459 6.459 6 N -0.333 5.333 7 C -0.082 4.082 8 C -0.020 4.020 9 C -0.015 4.015 10 N -0.245 5.245 11 C -0.129 4.129 12 C -0.125 4.125 13 C -0.157 4.157 14 C -0.165 4.165 15 C -0.170 4.170 16 C -0.128 4.128 17 N -0.157 5.157 18 N -0.115 5.115 19 C 0.149 3.851 20 C -0.594 4.594 21 H 0.069 0.931 22 C -0.177 4.177 23 N -0.554 5.554 24 Si 0.795 3.205 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.195 1.195 28 H 0.107 0.893 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.084 0.916 48 H 0.255 0.745 49 H 0.066 0.934 50 H 0.050 0.950 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.582 23.670 5.529 24.939 hybrid contribution -0.813 -0.448 -1.632 1.878 sum 4.768 23.222 3.896 24.025 Atomic orbital electron populations 1.20579 0.86156 1.04258 1.03884 1.21920 0.95801 0.86788 0.94688 1.19938 0.93331 0.93073 1.28054 1.17122 0.84802 0.83827 0.74728 1.90673 1.18323 1.84254 1.52667 1.47355 1.07581 1.05549 1.72789 1.22585 0.79417 1.03916 1.02303 1.21857 1.01071 0.81373 0.97663 1.22543 0.98061 0.88299 0.92579 1.62128 1.03522 1.01561 1.57313 1.22486 0.94769 0.97673 0.97925 1.22383 0.91317 1.02156 0.96690 1.23105 0.95701 1.01394 0.95504 1.22681 0.96782 1.01017 0.96039 1.22975 0.97615 0.98880 0.97512 1.25596 0.98433 0.91577 0.97194 1.77114 0.98228 1.14655 1.25682 1.49124 1.03524 1.07667 1.51192 1.19339 0.95182 0.72470 0.98076 1.21388 1.48095 0.98382 0.91555 0.93120 1.25728 0.93783 0.95933 1.02280 1.69989 1.44859 1.07520 1.33046 0.85356 0.78407 0.78197 0.78570 1.19689 1.19550 1.19512 0.89265 0.88265 0.91302 0.90677 0.87267 0.90653 0.88258 0.91980 0.94975 0.90282 0.90284 0.92419 0.89798 0.95740 0.88889 0.89809 0.89691 0.92702 0.92675 0.91587 0.74474 0.93410 0.95026 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.43 9.42 71.24 0.67 -2.76 16 2 C 0.14 6.01 7.00 42.14 0.30 6.31 16 3 C -0.33 -11.84 6.04 -20.15 -0.12 -11.96 16 4 C 0.60 19.31 5.98 86.66 0.52 19.83 16 5 O -0.58 -21.50 13.15 -4.05 -0.05 -21.56 16 6 N -0.60 -13.53 2.26 -850.68 -1.92 -15.45 16 7 C 0.06 0.87 6.59 127.77 0.84 1.71 16 8 C 0.11 2.08 4.46 86.38 0.39 2.46 16 9 C 0.08 1.43 0.42 4.05 0.00 1.44 16 10 N -0.52 -8.54 4.81 -895.67 -4.31 -12.85 16 11 C 0.02 0.21 9.00 127.69 1.15 1.36 16 12 C 0.02 0.37 9.21 127.69 1.18 1.55 16 13 C -0.12 -1.99 6.88 31.18 0.21 -1.78 16 14 C -0.13 -2.60 8.00 31.18 0.25 -2.35 16 15 C -0.13 -3.23 6.82 31.12 0.21 -3.01 16 16 C 0.06 1.92 9.91 85.65 0.85 2.77 16 17 N -0.34 -14.51 12.50 -56.28 -0.70 -15.21 16 18 N -0.34 -15.78 3.56 -336.70 -1.20 -16.98 16 19 C 0.27 14.00 5.78 85.63 0.50 14.50 16 20 C -0.56 -30.96 9.39 25.60 0.24 -30.72 16 21 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 22 C 0.02 1.32 5.46 84.66 0.46 1.78 16 23 N -0.92 -51.58 13.29 21.45 0.28 -51.30 16 24 Si 0.97 42.96 29.54 68.60 2.03 44.98 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 28 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 29 H 0.10 3.69 6.38 -2.39 -0.02 3.67 16 30 H 0.07 2.75 7.70 -2.39 -0.02 2.74 16 31 H 0.08 1.08 6.35 -2.38 -0.02 1.07 16 32 H 0.11 0.87 7.77 -2.39 -0.02 0.85 16 33 H 0.08 1.10 5.85 -2.39 -0.01 1.09 16 34 H 0.10 1.43 6.36 -2.39 -0.02 1.42 16 35 H 0.06 1.56 6.33 -2.39 -0.02 1.54 16 36 H 0.03 0.34 6.75 -2.39 -0.02 0.32 16 37 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 0.75 6.97 -2.39 -0.02 0.73 16 39 H 0.06 1.12 6.61 -2.39 -0.02 1.10 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.02 0.42 6.88 -2.39 -0.02 0.41 16 42 H 0.09 1.53 4.66 -2.39 -0.01 1.52 16 43 H 0.08 1.14 7.15 -2.39 -0.02 1.12 16 44 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.05 1.42 6.65 -2.39 -0.02 1.41 16 47 H 0.07 2.01 4.94 -2.38 -0.01 2.00 16 48 H 0.24 5.26 4.19 -2.91 -0.01 5.25 16 49 H 0.05 2.51 7.62 -2.38 -0.02 2.49 16 50 H 0.03 1.77 8.14 -2.38 -0.02 1.75 16 51 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -68.22 384.91 2.72 -65.50 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.95 Total: 21.73 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 7.64 Total: 1.12 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -7.85 Total: -111.78 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.05 Total: -21.56 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -68.22 2.72 -65.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890118447.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.002 kcal (2) G-P(sol) polarization free energy of solvation -68.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds