Wall clock time and date at job start Tue Mar 31 2020 18:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35323 * 126.12454 * 2 1 4 4 C 1.50699 * 126.03827 * 359.97438 * 3 2 1 5 5 C 1.50700 * 109.46820 * 85.00643 * 4 3 2 6 6 O 1.21284 * 120.00344 * 359.97438 * 5 4 3 7 7 N 1.34785 * 119.99857 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99956 * 359.97438 * 7 5 4 9 9 C 1.46495 * 120.00028 * 179.97438 * 7 5 4 10 10 C 1.53005 * 109.47329 * 305.82576 * 9 7 5 11 11 C 1.53005 * 109.46718 * 299.99541 * 10 9 7 12 12 C 1.52994 * 109.47325 * 300.00486 * 11 10 9 13 13 N 1.46501 * 109.47389 * 180.02562 * 12 11 10 14 14 C 1.36937 * 120.00270 * 84.99123 * 13 12 11 15 15 H 1.07994 * 119.99968 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99461 * 180.02562 * 14 13 12 17 17 N 1.31611 * 120.00566 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99583 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46746 * 89.99718 * 18 16 14 20 20 H 1.48494 * 109.47293 * 209.99671 * 18 16 14 21 21 H 1.48498 * 109.46912 * 330.00412 * 18 16 14 22 22 C 1.52995 * 109.47502 * 59.99651 * 12 11 10 23 23 C 1.52995 * 109.47261 * 300.00141 * 22 12 11 24 24 C 1.39867 * 107.92041 * 180.02562 * 3 2 1 25 25 N 1.30836 * 108.20304 * 359.97438 * 24 3 2 26 26 N 1.34941 * 126.13089 * 179.97438 * 2 1 3 27 27 C 1.46500 * 126.03686 * 0.02562 * 26 2 1 28 28 H 1.09006 * 109.47173 * 269.97352 * 1 2 3 29 29 H 1.08991 * 109.47486 * 29.97689 * 1 2 3 30 30 H 1.09000 * 109.47171 * 149.98355 * 1 2 3 31 31 H 1.09000 * 109.47163 * 205.00396 * 4 3 2 32 32 H 1.09006 * 109.47378 * 325.00520 * 4 3 2 33 33 H 1.09000 * 109.47101 * 84.08117 * 8 7 5 34 34 H 1.08997 * 109.47171 * 204.08401 * 8 7 5 35 35 H 1.09002 * 109.47308 * 324.08157 * 8 7 5 36 36 H 1.09008 * 109.47054 * 65.82162 * 9 7 5 37 37 H 1.08994 * 109.47502 * 59.99550 * 10 9 7 38 38 H 1.08996 * 109.46901 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.47117 * 179.97438 * 11 10 9 40 40 H 1.09008 * 109.46692 * 59.99967 * 11 10 9 41 41 H 1.09008 * 109.46811 * 299.99407 * 12 11 10 42 42 H 0.96999 * 119.99606 * 265.00046 * 13 12 11 43 43 H 0.97001 * 120.00302 * 180.02562 * 17 16 14 44 44 H 1.09006 * 109.47164 * 179.97438 * 22 12 11 45 45 H 1.08997 * 109.47007 * 60.00388 * 22 12 11 46 46 H 1.09006 * 109.47399 * 300.00028 * 23 22 12 47 47 H 1.09002 * 109.47858 * 179.97438 * 23 22 12 48 48 H 1.07999 * 125.89884 * 179.97438 * 24 3 2 49 49 H 1.08998 * 109.46857 * 269.99555 * 27 26 2 50 50 H 1.08995 * 109.47379 * 29.99331 * 27 26 2 51 51 H 1.09004 * 109.47273 * 149.99918 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0931 0.0000 4 6 1.8431 2.5276 -0.0005 5 6 1.5711 2.9682 1.4147 6 8 1.7353 2.1935 2.3333 7 7 1.1441 4.2230 1.6595 8 6 0.9452 5.1586 0.5500 9 6 0.8791 4.6512 3.0352 10 6 -0.1015 3.6778 3.6924 11 6 -1.4114 3.6622 2.9019 12 6 -2.0173 5.0670 2.8909 13 7 -3.2718 5.0519 2.1345 14 6 -4.4402 4.6952 2.7531 15 1 -4.4370 4.4253 3.7988 16 6 -5.6287 4.6804 2.0361 17 7 -5.6326 5.0089 0.7617 18 14 -7.2228 4.1944 2.8803 19 1 -7.8701 5.4038 3.4495 20 1 -8.1341 3.5640 1.8918 21 1 -6.9311 3.2295 3.9707 22 6 -1.0367 6.0403 2.2338 23 6 0.2731 6.0560 3.0244 24 6 3.6334 0.6561 -0.0006 25 7 3.6334 -0.6523 -0.0004 26 7 2.3026 -1.0899 0.0005 27 6 1.8540 -2.4845 0.0006 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 2.6186 3.1586 -0.4348 32 1 0.9306 2.6155 -0.5903 33 1 -0.0429 5.0036 0.1167 34 1 1.0239 6.1814 0.9186 35 1 1.7066 4.9871 -0.2110 36 1 1.8123 4.6623 3.5985 37 1 0.3301 2.6770 3.7002 38 1 -0.2991 3.9967 4.7158 39 1 -2.1100 2.9684 3.3697 40 1 -1.2142 3.3436 1.8782 41 1 -2.2146 5.3856 3.9146 42 1 -3.2748 5.2946 1.1953 43 1 -6.4632 4.9989 0.2607 44 1 -1.4686 7.0411 2.2256 45 1 -0.8395 5.7218 1.2103 46 1 0.0760 6.3746 4.0480 47 1 0.9720 6.7491 2.5560 48 1 4.5083 1.2893 -0.0011 49 1 1.7424 -2.8302 1.0283 50 1 0.8957 -2.5580 -0.5134 51 1 2.5901 -3.1031 -0.5129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963393964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:15 Heat of formation + Delta-G solvation = 63.247823 kcal Electronic energy + Delta-G solvation = -30395.123144 eV Core-core repulsion = 26524.963798 eV Total energy + Delta-G solvation = -3870.159346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.41587 -40.29984 -37.74527 -35.00185 -33.82787 -33.30113 -32.75253 -31.08327 -30.61357 -29.52611 -27.97010 -26.76958 -26.28158 -25.49594 -23.51396 -22.20600 -21.51738 -20.84034 -20.00481 -19.21543 -18.44555 -17.10146 -16.75375 -16.53683 -15.96240 -15.65978 -15.44233 -15.06905 -14.39327 -14.35090 -13.95567 -13.86857 -13.60674 -13.43026 -13.19832 -13.14453 -12.86379 -12.78411 -12.51396 -12.48157 -12.31348 -12.13745 -12.01919 -11.89890 -11.72125 -11.63935 -11.47057 -11.00439 -10.86386 -10.61775 -10.52865 -10.30871 -10.11382 -10.03419 -9.62348 -9.54346 -9.30645 -9.25255 -8.80173 -8.35429 -8.28697 -6.91215 -5.75071 -3.02389 1.84487 2.45313 2.68659 2.88318 3.29344 3.43619 3.49378 3.50522 4.40051 4.60202 4.62404 4.72470 4.92977 4.94987 5.02039 5.08025 5.10703 5.13590 5.17818 5.21619 5.27432 5.30664 5.42209 5.52182 5.55534 5.62525 5.67992 5.77173 5.79371 5.84327 5.86601 5.88127 5.96475 6.02514 6.11495 6.16038 6.18435 6.36251 6.50433 6.60187 6.62342 6.67438 6.75338 6.94926 6.98173 7.09042 7.21783 7.61269 7.68209 7.72727 8.44385 8.45363 9.55330 10.14655 10.49293 11.47837 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011914 B = 0.003355 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.700533 B = 8344.438593 C = 9837.041338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.106 3.894 3 C -0.223 4.223 4 C -0.058 4.058 5 C 0.515 3.485 6 O -0.530 6.530 7 N -0.606 5.606 8 C 0.067 3.933 9 C 0.156 3.844 10 C -0.139 4.139 11 C -0.123 4.123 12 C 0.180 3.820 13 N -0.725 5.725 14 C -0.233 4.233 15 H 0.068 0.932 16 C -0.015 4.015 17 N -0.935 5.935 18 Si 0.903 3.097 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.283 1.283 22 C -0.144 4.144 23 C -0.122 4.122 24 C 0.062 3.938 25 N -0.304 5.304 26 N -0.376 5.376 27 C 0.102 3.898 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.041 0.959 42 H 0.382 0.618 43 H 0.254 0.746 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.179 0.821 49 H 0.073 0.927 50 H 0.086 0.914 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.030 -5.183 -3.784 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.021 4.021 3 C -0.234 4.234 4 C -0.099 4.099 5 C 0.303 3.697 6 O -0.407 6.407 7 N -0.340 5.340 8 C -0.076 4.076 9 C 0.053 3.947 10 C -0.177 4.177 11 C -0.164 4.164 12 C 0.070 3.930 13 N -0.365 5.365 14 C -0.364 4.364 15 H 0.086 0.914 16 C -0.210 4.210 17 N -0.584 5.584 18 Si 0.735 3.265 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.182 4.182 23 C -0.160 4.160 24 C -0.124 4.124 25 N -0.125 5.125 26 N -0.158 5.158 27 C -0.040 4.040 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.215 0.785 43 H 0.064 0.936 44 H 0.080 0.920 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.196 0.804 49 H 0.092 0.908 50 H 0.104 0.896 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 18.636 -6.865 -3.170 20.112 hybrid contribution -1.509 0.569 0.157 1.620 sum 17.128 -6.296 -3.013 18.495 Atomic orbital electron populations 1.20499 0.87159 1.03682 1.03990 1.20812 0.94471 0.86969 0.99885 1.19124 0.92449 0.93928 1.17925 1.19937 1.02861 0.92539 0.94569 1.20598 0.76731 0.81028 0.91390 1.90628 1.51476 1.52440 1.46121 1.47871 1.66578 1.12150 1.07408 1.22147 1.01379 0.94750 0.89316 1.20989 0.97512 0.94487 0.81683 1.22015 0.96080 1.00903 0.98746 1.22096 0.94601 1.00417 0.99260 1.20197 0.86055 0.91782 0.94981 1.42409 1.02023 1.81459 1.10631 1.19244 0.85704 1.37185 0.94292 0.91364 1.24695 0.97664 1.02778 0.95905 1.69648 1.26206 1.55356 1.07159 0.86241 0.84010 0.78044 0.78245 1.21816 1.21847 1.20843 1.22280 0.94509 1.00585 1.00777 1.21829 0.97451 0.94978 1.01757 1.23613 0.97350 0.92068 0.99319 1.77299 0.96644 1.12868 1.25670 1.48288 1.03930 1.05843 1.57760 1.21806 1.00864 0.77952 1.03355 0.89625 0.89502 0.91283 0.88555 0.88572 0.91415 0.89941 0.91910 0.91816 0.89901 0.92109 0.92667 0.93110 0.94069 0.78509 0.93648 0.92014 0.90384 0.90668 0.91808 0.80441 0.90829 0.89574 0.89471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.90 36.00 0.36 -0.67 16 2 C 0.11 1.35 6.93 -82.27 -0.57 0.78 16 3 C -0.22 -2.83 4.59 -105.05 -0.48 -3.31 16 4 C -0.06 -0.63 4.55 -29.04 -0.13 -0.76 16 5 C 0.51 7.07 7.20 -10.98 -0.08 6.99 16 6 O -0.53 -9.23 13.74 5.55 0.08 -9.15 16 7 N -0.61 -7.53 2.28 -173.93 -0.40 -7.92 16 8 C 0.07 0.65 8.06 59.85 0.48 1.13 16 9 C 0.16 2.08 3.05 -67.93 -0.21 1.88 16 10 C -0.14 -2.19 5.14 -26.73 -0.14 -2.33 16 11 C -0.12 -2.27 5.34 -26.73 -0.14 -2.42 16 12 C 0.18 3.48 2.77 -67.94 -0.19 3.29 16 13 N -0.72 -17.73 5.12 -53.43 -0.27 -18.00 16 14 C -0.23 -6.41 9.93 -15.06 -0.15 -6.56 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 17 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 18 Si 0.90 22.33 29.55 -169.99 -5.02 17.31 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C -0.14 -2.18 4.84 -26.74 -0.13 -2.31 16 23 C -0.12 -1.49 4.91 -26.73 -0.13 -1.62 16 24 C 0.06 0.79 11.96 -17.37 -0.21 0.59 16 25 N -0.30 -4.27 12.58 30.62 0.39 -3.88 16 26 N -0.38 -4.71 4.01 -63.89 -0.26 -4.97 16 27 C 0.10 0.84 11.27 59.85 0.67 1.51 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.09 0.91 7.25 -51.93 -0.38 0.54 16 30 H 0.07 0.59 7.08 -51.93 -0.37 0.22 16 31 H 0.10 0.79 7.42 -51.93 -0.39 0.41 16 32 H 0.10 0.95 7.27 -51.93 -0.38 0.57 16 33 H 0.07 0.73 6.49 -51.93 -0.34 0.39 16 34 H 0.08 0.73 5.26 -51.93 -0.27 0.45 16 35 H 0.06 0.45 6.69 -51.93 -0.35 0.10 16 36 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 37 H 0.08 1.46 5.76 -51.93 -0.30 1.16 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.97 7.46 -51.92 -0.39 0.58 16 41 H 0.04 0.85 8.08 -51.92 -0.42 0.43 16 42 H 0.38 9.84 7.80 -40.82 -0.32 9.52 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.08 1.13 3.95 -51.93 -0.20 0.92 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.06 0.64 6.67 -51.93 -0.35 0.30 16 48 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.09 0.52 7.05 -51.93 -0.37 0.15 16 51 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 391.18 15.07 5.90 5.90 Total: -1.00 -34.94 391.18 -8.17 -43.10 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -8.16 Total: 9.01 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -1.14 Total: -4.34 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: 0.18 Total: -61.82 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.08 Total: -9.15 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.94 -8.17 -43.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963393964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.351 kcal (2) G-P(sol) polarization free energy of solvation -34.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds