Wall clock time and date at job start Tue Mar 31 2020 18:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35323 * 126.12454 * 2 1 4 4 C 1.50699 * 126.03827 * 359.97438 * 3 2 1 5 5 C 1.50700 * 109.46820 * 85.00643 * 4 3 2 6 6 O 1.21284 * 120.00344 * 359.97438 * 5 4 3 7 7 N 1.34785 * 119.99857 * 180.02562 * 5 4 3 8 8 C 1.46498 * 119.99956 * 359.97438 * 7 5 4 9 9 C 1.46495 * 120.00028 * 179.97438 * 7 5 4 10 10 C 1.53005 * 109.47329 * 305.82576 * 9 7 5 11 11 C 1.53005 * 109.46718 * 299.99541 * 10 9 7 12 12 C 1.52994 * 109.47325 * 300.00486 * 11 10 9 13 13 N 1.46501 * 109.47389 * 180.02562 * 12 11 10 14 14 C 1.36937 * 120.00270 * 84.99123 * 13 12 11 15 15 H 1.07994 * 119.99968 * 0.02562 * 14 13 12 16 16 C 1.38811 * 119.99461 * 180.02562 * 14 13 12 17 17 N 1.31611 * 120.00566 * 0.02562 * 16 14 13 18 18 Si 1.86808 * 119.99583 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.46746 * 89.99718 * 18 16 14 20 20 H 1.48494 * 109.47293 * 209.99671 * 18 16 14 21 21 H 1.48498 * 109.46912 * 330.00412 * 18 16 14 22 22 C 1.52995 * 109.47502 * 59.99651 * 12 11 10 23 23 C 1.52995 * 109.47261 * 300.00141 * 22 12 11 24 24 C 1.39867 * 107.92041 * 180.02562 * 3 2 1 25 25 N 1.30836 * 108.20304 * 359.97438 * 24 3 2 26 26 N 1.34941 * 126.13089 * 179.97438 * 2 1 3 27 27 C 1.46500 * 126.03686 * 0.02562 * 26 2 1 28 28 H 1.09006 * 109.47173 * 269.97352 * 1 2 3 29 29 H 1.08991 * 109.47486 * 29.97689 * 1 2 3 30 30 H 1.09000 * 109.47171 * 149.98355 * 1 2 3 31 31 H 1.09000 * 109.47163 * 205.00396 * 4 3 2 32 32 H 1.09006 * 109.47378 * 325.00520 * 4 3 2 33 33 H 1.09000 * 109.47101 * 84.08117 * 8 7 5 34 34 H 1.08997 * 109.47171 * 204.08401 * 8 7 5 35 35 H 1.09002 * 109.47308 * 324.08157 * 8 7 5 36 36 H 1.09008 * 109.47054 * 65.82162 * 9 7 5 37 37 H 1.08994 * 109.47502 * 59.99550 * 10 9 7 38 38 H 1.08996 * 109.46901 * 180.02562 * 10 9 7 39 39 H 1.09002 * 109.47117 * 179.97438 * 11 10 9 40 40 H 1.09008 * 109.46692 * 59.99967 * 11 10 9 41 41 H 1.09008 * 109.46811 * 299.99407 * 12 11 10 42 42 H 0.96999 * 119.99606 * 265.00046 * 13 12 11 43 43 H 0.97001 * 120.00302 * 180.02562 * 17 16 14 44 44 H 1.09006 * 109.47164 * 179.97438 * 22 12 11 45 45 H 1.08997 * 109.47007 * 60.00388 * 22 12 11 46 46 H 1.09006 * 109.47399 * 300.00028 * 23 22 12 47 47 H 1.09002 * 109.47858 * 179.97438 * 23 22 12 48 48 H 1.07999 * 125.89884 * 179.97438 * 24 3 2 49 49 H 1.08998 * 109.46857 * 269.99555 * 27 26 2 50 50 H 1.08995 * 109.47379 * 29.99331 * 27 26 2 51 51 H 1.09004 * 109.47273 * 149.99918 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0931 0.0000 4 6 1.8431 2.5276 -0.0005 5 6 1.5711 2.9682 1.4147 6 8 1.7353 2.1935 2.3333 7 7 1.1441 4.2230 1.6595 8 6 0.9452 5.1586 0.5500 9 6 0.8791 4.6512 3.0352 10 6 -0.1015 3.6778 3.6924 11 6 -1.4114 3.6622 2.9019 12 6 -2.0173 5.0670 2.8909 13 7 -3.2718 5.0519 2.1345 14 6 -4.4402 4.6952 2.7531 15 1 -4.4370 4.4253 3.7988 16 6 -5.6287 4.6804 2.0361 17 7 -5.6326 5.0089 0.7617 18 14 -7.2228 4.1944 2.8803 19 1 -7.8701 5.4038 3.4495 20 1 -8.1341 3.5640 1.8918 21 1 -6.9311 3.2295 3.9707 22 6 -1.0367 6.0403 2.2338 23 6 0.2731 6.0560 3.0244 24 6 3.6334 0.6561 -0.0006 25 7 3.6334 -0.6523 -0.0004 26 7 2.3026 -1.0899 0.0005 27 6 1.8540 -2.4845 0.0006 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5141 31 1 2.6186 3.1586 -0.4348 32 1 0.9306 2.6155 -0.5903 33 1 -0.0429 5.0036 0.1167 34 1 1.0239 6.1814 0.9186 35 1 1.7066 4.9871 -0.2110 36 1 1.8123 4.6623 3.5985 37 1 0.3301 2.6770 3.7002 38 1 -0.2991 3.9967 4.7158 39 1 -2.1100 2.9684 3.3697 40 1 -1.2142 3.3436 1.8782 41 1 -2.2146 5.3856 3.9146 42 1 -3.2748 5.2946 1.1953 43 1 -6.4632 4.9989 0.2607 44 1 -1.4686 7.0411 2.2256 45 1 -0.8395 5.7218 1.2103 46 1 0.0760 6.3746 4.0480 47 1 0.9720 6.7491 2.5560 48 1 4.5083 1.2893 -0.0011 49 1 1.7424 -2.8302 1.0283 50 1 0.8957 -2.5580 -0.5134 51 1 2.5901 -3.1031 -0.5129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963393964.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:14 Heat of formation + Delta-G solvation = 41.237302 kcal Electronic energy + Delta-G solvation = -30396.077592 eV Core-core repulsion = 26524.963798 eV Total energy + Delta-G solvation = -3871.113794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.32906 -41.39430 -38.99923 -36.49847 -34.92697 -34.50743 -33.82118 -32.70578 -31.89687 -30.54435 -29.38838 -27.60472 -27.30244 -26.52210 -25.34493 -23.52083 -22.69396 -21.86026 -21.24631 -20.27021 -19.53457 -19.04442 -17.75738 -17.45082 -17.11078 -16.78454 -16.61963 -16.34019 -15.85255 -15.31811 -15.24407 -15.15625 -14.92286 -14.66335 -14.39382 -14.04560 -13.97759 -13.81199 -13.69457 -13.49340 -13.33016 -13.15462 -13.08622 -12.98685 -12.92238 -12.80408 -12.76255 -12.64866 -12.43275 -12.13718 -12.02264 -11.86118 -11.52928 -11.39355 -11.27280 -11.03190 -10.87144 -10.34450 -10.17469 -9.38698 -9.21316 -8.93985 -7.91968 -5.18300 0.91624 1.46815 1.47197 1.55557 1.65010 1.75554 1.86688 2.34971 2.57251 3.40877 3.62949 3.73302 3.77618 3.82659 3.95027 4.08457 4.15824 4.29486 4.31176 4.35614 4.36967 4.40026 4.43683 4.46406 4.49455 4.57760 4.63822 4.67120 4.68605 4.72448 4.76897 4.84894 4.91104 4.96830 5.01829 5.03777 5.12554 5.21130 5.27263 5.30348 5.33433 5.36651 5.51394 5.60507 5.69526 5.74063 5.85757 6.13686 6.31738 6.63780 6.75935 7.37692 7.43645 8.15926 8.39612 9.31222 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011914 B = 0.003355 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.700533 B = 8344.438593 C = 9837.041338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.091 3.909 3 C -0.237 4.237 4 C -0.052 4.052 5 C 0.510 3.490 6 O -0.574 6.574 7 N -0.604 5.604 8 C 0.059 3.941 9 C 0.157 3.843 10 C -0.131 4.131 11 C -0.107 4.107 12 C 0.175 3.825 13 N -0.734 5.734 14 C -0.236 4.236 15 H 0.066 0.934 16 C -0.071 4.071 17 N -0.965 5.965 18 Si 0.964 3.036 19 H -0.287 1.287 20 H -0.294 1.294 21 H -0.276 1.276 22 C -0.135 4.135 23 C -0.111 4.111 24 C 0.054 3.946 25 N -0.335 5.335 26 N -0.382 5.382 27 C 0.092 3.908 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.020 0.980 40 H 0.042 0.958 41 H 0.029 0.971 42 H 0.373 0.627 43 H 0.250 0.750 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.100 0.900 48 H 0.202 0.798 49 H 0.076 0.924 50 H 0.108 0.892 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.224 -4.171 -4.264 20.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.038 4.038 3 C -0.248 4.248 4 C -0.092 4.092 5 C 0.299 3.701 6 O -0.454 6.454 7 N -0.338 5.338 8 C -0.082 4.082 9 C 0.054 3.946 10 C -0.169 4.169 11 C -0.148 4.148 12 C 0.067 3.933 13 N -0.374 5.374 14 C -0.368 4.368 15 H 0.083 0.917 16 C -0.264 4.264 17 N -0.616 5.616 18 Si 0.793 3.207 19 H -0.214 1.214 20 H -0.221 1.221 21 H -0.201 1.201 22 C -0.173 4.173 23 C -0.148 4.148 24 C -0.131 4.131 25 N -0.156 5.156 26 N -0.165 5.165 27 C -0.048 4.048 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.147 0.853 32 H 0.124 0.876 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.205 0.795 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.118 0.882 48 H 0.218 0.782 49 H 0.095 0.905 50 H 0.126 0.874 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 19.858 -5.841 -3.636 21.016 hybrid contribution -1.851 0.208 0.346 1.895 sum 18.006 -5.634 -3.291 19.152 Atomic orbital electron populations 1.20479 0.86352 1.04972 1.03075 1.21167 0.95203 0.87445 0.99940 1.19452 0.92571 0.94886 1.17928 1.19983 1.04310 0.92056 0.92861 1.21122 0.75956 0.80922 0.92087 1.90614 1.53473 1.53691 1.47605 1.47953 1.65713 1.12362 1.07725 1.22355 1.01875 0.94813 0.89159 1.20931 0.97029 0.94206 0.82388 1.21900 0.95067 1.01030 0.98942 1.21856 0.95223 0.98861 0.98817 1.20414 0.85348 0.93278 0.94232 1.42579 1.03004 1.81283 1.10507 1.19534 0.87010 1.35996 0.94270 0.91651 1.25404 1.00594 1.03767 0.96619 1.69780 1.26577 1.56952 1.08323 0.85285 0.80336 0.77740 0.77303 1.21444 1.22077 1.20125 1.22204 0.94754 0.98826 1.01486 1.21780 0.96174 0.94864 1.02023 1.24072 0.98318 0.92020 0.98673 1.77225 0.97814 1.13773 1.26824 1.48628 1.03503 1.07084 1.57316 1.22109 1.02251 0.76388 1.04078 0.91511 0.89304 0.88989 0.85330 0.87576 0.92579 0.88433 0.88687 0.90896 0.91744 0.91632 0.96143 0.93917 0.95315 0.79457 0.94094 0.92318 0.89334 0.90070 0.88200 0.78161 0.90547 0.87364 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 9.90 71.23 0.71 -1.24 16 2 C 0.09 2.26 6.93 41.41 0.29 2.55 16 3 C -0.24 -5.78 4.59 -20.14 -0.09 -5.88 16 4 C -0.05 -1.01 4.55 29.10 0.13 -0.88 16 5 C 0.51 13.30 7.20 87.66 0.63 13.93 16 6 O -0.57 -19.94 13.74 -3.04 -0.04 -19.98 16 7 N -0.60 -13.63 2.28 -822.58 -1.87 -15.50 16 8 C 0.06 0.94 8.06 127.77 1.03 1.97 16 9 C 0.16 3.87 3.05 44.99 0.14 4.01 16 10 C -0.13 -4.10 5.14 30.60 0.16 -3.95 16 11 C -0.11 -4.03 5.34 30.59 0.16 -3.86 16 12 C 0.18 6.78 2.77 44.99 0.12 6.90 16 13 N -0.73 -36.32 5.12 -322.95 -1.65 -37.98 16 14 C -0.24 -13.14 9.93 84.03 0.83 -12.31 16 15 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 16 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 17 N -0.97 -57.96 13.06 21.65 0.28 -57.68 16 18 Si 0.96 46.26 29.55 68.60 2.03 48.29 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 20 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 C -0.14 -3.83 4.84 30.59 0.15 -3.69 16 23 C -0.11 -2.34 4.91 30.59 0.15 -2.19 16 24 C 0.05 1.33 11.96 85.24 1.02 2.35 16 25 N -0.34 -9.28 12.58 -57.03 -0.72 -10.00 16 26 N -0.38 -9.45 4.01 -356.04 -1.43 -10.88 16 27 C 0.09 1.45 11.27 127.77 1.44 2.89 16 28 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.09 1.83 7.25 -2.39 -0.02 1.81 16 30 H 0.09 1.47 7.08 -2.39 -0.02 1.46 16 31 H 0.13 1.65 7.42 -2.39 -0.02 1.63 16 32 H 0.11 1.88 7.27 -2.38 -0.02 1.86 16 33 H 0.06 1.06 6.49 -2.39 -0.02 1.05 16 34 H 0.10 1.27 5.26 -2.39 -0.01 1.26 16 35 H 0.09 0.93 6.69 -2.39 -0.02 0.91 16 36 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.06 2.32 5.76 -2.39 -0.01 2.30 16 38 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.04 1.65 7.46 -2.38 -0.02 1.63 16 41 H 0.03 1.18 8.08 -2.38 -0.02 1.16 16 42 H 0.37 19.48 7.80 -92.71 -0.72 18.76 16 43 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 44 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 45 H 0.09 2.37 3.95 -2.39 -0.01 2.36 16 46 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 47 H 0.10 1.51 6.67 -2.39 -0.02 1.49 16 48 H 0.20 3.57 8.06 -2.91 -0.02 3.54 16 49 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.11 1.16 7.05 -2.39 -0.02 1.15 16 51 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -77.47 391.18 4.15 -73.32 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.22 Total: 33.40 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 7.34 Total: -3.00 kcal Atomic # 7 Polarization: -126.64 SS G_CDS: -5.39 Total: -132.03 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.04 Total: -19.98 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -77.47 4.15 -73.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963393964.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.558 kcal (2) G-P(sol) polarization free energy of solvation -77.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds