Wall clock time and date at job start Tue Mar 31 2020 18:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34252 * 126.29243 * 2 1 4 4 H 0.96999 * 125.75438 * 359.94231 * 3 2 1 5 5 N 1.39936 * 108.49540 * 179.97438 * 3 2 1 6 6 C 1.30449 * 108.89313 * 359.71445 * 5 3 2 7 7 C 1.50699 * 125.99159 * 180.26790 * 6 5 3 8 8 C 1.53002 * 109.46789 * 300.20675 * 7 6 5 9 9 C 1.53002 * 109.47341 * 60.20529 * 7 6 5 10 10 C 1.38048 * 126.28789 * 179.97438 * 2 1 3 11 11 C 1.47422 * 126.41568 * 0.03332 * 10 2 1 12 12 O 1.21601 * 120.00050 * 90.03231 * 11 10 2 13 13 N 1.34783 * 119.99944 * 269.74662 * 11 10 2 14 14 C 1.46492 * 119.99910 * 180.27779 * 13 11 10 15 15 C 1.53001 * 109.47150 * 180.02562 * 14 13 11 16 16 H 1.08996 * 109.49739 * 305.06258 * 15 14 13 17 17 C 1.53038 * 109.49896 * 184.99878 * 15 14 13 18 18 C 1.53047 * 109.53744 * 178.68041 * 17 15 14 19 19 C 1.53191 * 109.31106 * 61.36726 * 18 17 15 20 20 N 1.46925 * 108.77748 * 305.36517 * 19 18 17 21 21 C 1.36933 * 120.63241 * 233.58657 * 20 19 18 22 22 H 1.08004 * 119.99879 * 151.82559 * 21 20 19 23 23 C 1.38806 * 119.99860 * 331.83387 * 21 20 19 24 24 N 1.31618 * 120.00076 * 343.07213 * 23 21 20 25 25 Si 1.86805 * 120.00019 * 163.07877 * 23 21 20 26 26 H 1.48503 * 109.47016 * 89.99845 * 25 23 21 27 27 H 1.48501 * 109.46862 * 209.99531 * 25 23 21 28 28 H 1.48495 * 109.47000 * 329.99674 * 25 23 21 29 29 C 1.46928 * 118.73874 * 53.60554 * 20 19 18 30 30 H 1.09006 * 109.46943 * 270.04166 * 1 2 3 31 31 H 1.09000 * 109.47501 * 30.04187 * 1 2 3 32 32 H 1.09006 * 109.47752 * 150.04198 * 1 2 3 33 33 H 1.08997 * 109.47718 * 180.21476 * 7 6 5 34 34 H 1.09004 * 109.46886 * 60.00312 * 8 7 6 35 35 H 1.09001 * 109.47312 * 179.97438 * 8 7 6 36 36 H 1.08999 * 109.47641 * 299.99976 * 8 7 6 37 37 H 1.08998 * 109.46763 * 60.00443 * 9 7 6 38 38 H 1.09001 * 109.47159 * 180.02562 * 9 7 6 39 39 H 1.09001 * 109.47013 * 300.00295 * 9 7 6 40 40 H 0.97002 * 119.99449 * 0.28108 * 13 11 10 41 41 H 1.09003 * 109.47593 * 300.00437 * 14 13 11 42 42 H 1.08999 * 109.47196 * 60.00445 * 14 13 11 43 43 H 1.08995 * 109.46638 * 298.70344 * 17 15 14 44 44 H 1.09004 * 109.46143 * 58.67917 * 17 15 14 45 45 H 1.08998 * 109.49337 * 181.31486 * 18 17 15 46 46 H 1.08995 * 109.49932 * 301.38055 * 18 17 15 47 47 H 1.09002 * 109.58603 * 65.14736 * 19 18 17 48 48 H 1.08990 * 109.58792 * 185.57471 * 19 18 17 49 49 H 0.97011 * 120.00096 * 179.97438 * 24 23 21 50 50 H 1.08996 * 109.58522 * 186.60771 * 29 20 19 51 51 H 1.09006 * 109.58548 * 66.18146 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3016 1.0821 0.0000 4 1 2.0026 2.0048 -0.0008 5 7 3.6340 0.6544 0.0006 6 6 3.6590 -0.6499 0.0071 7 6 4.8950 -1.5119 0.0157 8 6 5.7328 -1.2145 -1.2295 9 6 5.7190 -1.2097 1.2689 10 6 2.3240 -1.1127 0.0005 11 6 1.8857 -2.5203 0.0004 12 8 1.7060 -3.1011 -1.0527 13 7 1.6897 -3.1651 1.1677 14 6 1.2600 -4.5656 1.1676 15 6 1.1119 -5.0537 2.6101 16 1 2.0441 -4.8845 3.1489 17 6 0.7847 -6.5487 2.6124 18 6 0.6688 -7.0451 4.0555 19 6 -0.4706 -6.2997 4.7576 20 7 -0.2375 -4.8544 4.6334 21 6 -0.2213 -4.0524 5.7432 22 1 0.3660 -3.1460 5.7459 23 6 -0.9595 -4.4045 6.8647 24 7 -1.9193 -5.2997 6.7665 25 14 -0.5908 -3.6076 8.5136 26 1 -1.4123 -2.3797 8.6646 27 1 -0.9163 -4.5586 9.6067 28 1 0.8492 -3.2511 8.5801 29 6 -0.0225 -4.2858 3.2958 30 1 -0.3633 0.0007 1.0277 31 1 -0.3634 0.8896 -0.5145 32 1 -0.3635 -0.8904 -0.5132 33 1 4.6052 -2.5627 0.0160 34 1 6.0227 -0.1637 -1.2299 35 1 6.6271 -1.8377 -1.2232 36 1 5.1459 -1.4298 -2.1224 37 1 5.1221 -1.4216 2.1560 38 1 6.6132 -1.8329 1.2749 39 1 6.0088 -0.1589 1.2685 40 1 1.8332 -2.7018 2.0077 41 1 0.3019 -4.6518 0.6550 42 1 2.0036 -5.1738 0.6525 43 1 -0.1598 -6.7147 2.0944 44 1 1.5789 -7.0951 2.1035 45 1 0.4589 -8.1146 4.0565 46 1 1.6051 -6.8575 4.5811 47 1 -1.4200 -6.5582 4.2886 48 1 -0.4938 -6.5768 5.8114 49 1 -2.4349 -5.5461 7.5504 50 1 0.2500 -3.2342 3.3852 51 1 -0.9354 -4.3802 2.7076 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023694621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:56 Heat of formation + Delta-G solvation = 26.543984 kcal Electronic energy + Delta-G solvation = -29711.026342 eV Core-core repulsion = 25839.275398 eV Total energy + Delta-G solvation = -3871.750944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.65235 -39.20575 -37.69104 -35.93640 -34.71746 -32.99433 -32.30733 -31.16252 -30.44930 -30.08090 -27.59416 -27.27897 -25.48909 -25.21760 -23.45152 -22.54884 -21.97502 -20.85758 -19.81175 -19.24179 -18.97424 -17.91429 -16.74962 -16.34976 -15.85170 -15.19874 -15.07354 -14.90182 -14.79028 -14.53146 -14.11739 -13.71773 -13.63967 -13.50800 -13.43087 -13.14915 -12.83530 -12.78113 -12.68458 -12.34198 -12.29668 -12.17758 -12.11391 -11.62990 -11.36532 -11.29277 -11.22300 -11.03648 -10.76121 -10.71267 -10.50318 -10.24687 -10.18588 -9.98651 -9.86822 -9.56556 -9.54981 -9.42534 -8.85971 -8.74918 -8.48497 -6.68585 -5.81254 -3.24125 1.53871 2.31094 2.50641 2.69448 3.34356 3.42033 3.43909 3.49630 4.20210 4.45343 4.46476 4.66964 4.86743 4.97867 5.00594 5.11813 5.23512 5.26166 5.32297 5.32928 5.44597 5.48348 5.50553 5.62175 5.63211 5.65868 5.69766 5.75861 5.83654 5.85390 5.97881 6.01843 6.08939 6.10504 6.24470 6.31361 6.34003 6.38330 6.56231 6.59373 6.70763 6.78134 6.86125 6.96498 6.97251 7.39132 7.42526 7.65696 7.68621 7.76422 8.37031 8.42560 9.18817 9.82477 10.39426 11.26945 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011921 B = 0.003080 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.300516 B = 9089.683444 C = 9725.698138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.134 3.866 3 N -0.464 5.464 4 H 0.441 0.559 5 N -0.291 5.291 6 C 0.126 3.874 7 C -0.018 4.018 8 C -0.141 4.141 9 C -0.143 4.143 10 C -0.282 4.282 11 C 0.596 3.404 12 O -0.542 6.542 13 N -0.714 5.714 14 C 0.127 3.873 15 C -0.117 4.117 16 H 0.073 0.927 17 C -0.099 4.099 18 C -0.142 4.142 19 C 0.169 3.831 20 N -0.591 5.591 21 C -0.254 4.254 22 H 0.064 0.936 23 C 0.003 3.997 24 N -0.901 5.901 25 Si 0.900 3.100 26 H -0.287 1.287 27 H -0.289 1.289 28 H -0.279 1.279 29 C 0.155 3.845 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.404 0.596 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.017 0.983 48 H 0.086 0.914 49 H 0.254 0.746 50 H 0.049 0.951 51 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.778 8.329 -13.493 18.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.001 3.999 3 N -0.170 5.170 4 H 0.285 0.715 5 N -0.112 5.112 6 C -0.042 4.042 7 C -0.039 4.039 8 C -0.199 4.199 9 C -0.200 4.200 10 C -0.296 4.296 11 C 0.380 3.620 12 O -0.419 6.419 13 N -0.365 5.365 14 C 0.003 3.997 15 C -0.138 4.138 16 H 0.091 0.909 17 C -0.138 4.138 18 C -0.181 4.181 19 C 0.044 3.956 20 N -0.314 5.314 21 C -0.383 4.383 22 H 0.081 0.919 23 C -0.195 4.195 24 N -0.545 5.545 25 Si 0.730 3.270 26 H -0.214 1.214 27 H -0.215 1.215 28 H -0.205 1.205 29 C 0.028 3.972 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.239 0.761 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.035 0.965 48 H 0.104 0.896 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 10.225 8.895 -14.097 19.555 hybrid contribution -0.592 0.443 1.315 1.509 sum 9.633 9.338 -12.782 18.530 Atomic orbital electron populations 1.20617 0.86345 1.04615 1.04466 1.21393 0.94505 0.86686 0.97281 1.45986 1.04109 1.08232 1.58697 0.71496 1.77024 0.95610 1.12484 1.26123 1.22234 0.93978 0.91129 0.96848 1.19677 0.89918 0.97331 0.96941 1.21799 0.99327 1.02193 0.96601 1.21821 0.99532 1.02287 0.96407 1.19911 0.92953 0.93560 1.23220 1.17270 0.76429 0.84601 0.83678 1.90767 1.51517 1.68088 1.31528 1.46122 1.68382 1.13533 1.08474 1.21482 0.99837 0.80554 0.97854 1.21949 1.01546 0.96983 0.93334 0.90864 1.21340 1.00437 0.94140 0.97843 1.22171 1.01758 0.98743 0.95420 1.20790 0.91983 0.82366 1.00495 1.44031 1.83631 1.03033 1.00677 1.19134 1.22016 1.05673 0.91499 0.91851 1.25031 0.95705 0.99459 0.99332 1.70037 1.20502 1.35332 1.28677 0.86342 0.78076 0.78570 0.84041 1.21437 1.21539 1.20489 1.20890 0.93727 0.95177 0.87399 0.88946 0.90430 0.89045 0.89442 0.92032 0.91885 0.92409 0.92243 0.91831 0.91985 0.76149 0.91557 0.91915 0.92486 0.93419 0.93215 0.92767 0.96466 0.89623 0.93632 0.93220 0.96388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 10.25 36.00 0.37 -0.48 16 2 C 0.13 1.45 7.29 -81.60 -0.60 0.85 16 3 N -0.46 -4.56 7.29 33.86 0.25 -4.32 16 4 H 0.44 2.78 8.96 -182.72 -1.64 1.14 16 5 N -0.29 -3.55 12.63 33.90 0.43 -3.12 16 6 C 0.13 1.58 5.77 -82.02 -0.47 1.11 16 7 C -0.02 -0.20 3.31 -91.77 -0.30 -0.50 16 8 C -0.14 -1.36 9.18 37.16 0.34 -1.02 16 9 C -0.14 -1.37 9.18 37.16 0.34 -1.02 16 10 C -0.28 -3.70 5.88 -105.07 -0.62 -4.32 16 11 C 0.60 8.74 6.67 -12.52 -0.08 8.66 16 12 O -0.54 -9.72 17.11 5.28 0.09 -9.63 16 13 N -0.71 -9.68 5.33 -61.39 -0.33 -10.01 16 14 C 0.13 1.80 5.07 -4.05 -0.02 1.78 16 15 C -0.12 -1.88 2.37 -90.50 -0.21 -2.09 16 16 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 17 C -0.10 -1.59 5.17 -26.69 -0.14 -1.73 16 18 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 19 C 0.17 3.93 5.30 -3.71 -0.02 3.91 16 20 N -0.59 -14.23 2.99 -172.32 -0.52 -14.75 16 21 C -0.25 -6.73 9.58 -15.06 -0.14 -6.88 16 22 H 0.06 1.64 7.89 -52.48 -0.41 1.23 16 23 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 24 N -0.90 -25.68 11.20 55.49 0.62 -25.06 16 25 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 C 0.15 3.03 5.60 -3.71 -0.02 3.01 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.87 7.96 -51.93 -0.41 0.46 16 33 H 0.09 1.00 7.56 -51.93 -0.39 0.61 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.40 5.17 7.69 -40.82 -0.31 4.86 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 49 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 50 H 0.05 0.93 7.14 -51.93 -0.37 0.56 16 51 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 409.07 15.07 6.16 6.16 Total: -1.00 -32.47 409.07 -10.33 -42.80 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -10.18 Total: 3.24 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -1.83 Total: -1.48 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.45 Total: -57.25 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.47 -10.33 -42.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023694621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.341 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds