Wall clock time and date at job start Tue Mar 31 2020 18:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.34258 * 126.29235 * 2 1 4 4 H 0.96995 * 125.75279 * 359.94747 * 3 2 1 5 5 N 1.39930 * 108.48974 * 179.97438 * 3 2 1 6 6 C 1.30454 * 108.89994 * 0.02562 * 5 3 2 7 7 C 1.50697 * 125.98705 * 180.02562 * 6 5 3 8 8 C 1.53001 * 109.47499 * 299.97314 * 7 6 5 9 9 C 1.53001 * 109.47140 * 59.97773 * 7 6 5 10 10 C 1.38044 * 126.28912 * 179.69272 * 2 1 3 11 11 C 1.47431 * 126.41536 * 359.97438 * 10 2 1 12 12 O 1.21601 * 120.00440 * 90.02546 * 11 10 2 13 13 N 1.34780 * 119.99472 * 270.02488 * 11 10 2 14 14 C 1.46921 * 120.63510 * 359.72114 * 13 11 10 15 15 C 1.52763 * 109.00910 * 233.58304 * 14 13 11 16 16 C 1.53035 * 109.38316 * 305.58939 * 15 14 13 17 17 C 1.53034 * 109.54287 * 61.23841 * 16 15 14 18 18 H 1.08997 * 109.52626 * 58.60131 * 17 16 15 19 19 N 1.46500 * 109.50305 * 178.68310 * 17 16 15 20 20 C 1.46507 * 119.99749 * 59.83512 * 19 17 16 21 21 C 1.36935 * 120.00487 * 239.84031 * 19 17 16 22 22 H 1.08002 * 119.99636 * 22.06277 * 21 19 17 23 23 C 1.38810 * 120.00291 * 202.07190 * 21 19 17 24 24 N 1.31620 * 120.00011 * 12.39172 * 23 21 19 25 25 Si 1.86803 * 120.00066 * 192.40126 * 23 21 19 26 26 H 1.48499 * 109.47189 * 59.99298 * 25 23 21 27 27 H 1.48497 * 109.46963 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.46676 * 299.99665 * 25 23 21 29 29 C 1.46936 * 120.62625 * 180.02562 * 13 11 10 30 30 H 1.08994 * 109.47009 * 90.02341 * 1 2 3 31 31 H 1.09003 * 109.46566 * 330.02300 * 1 2 3 32 32 H 1.09005 * 109.46810 * 210.02350 * 1 2 3 33 33 H 1.09003 * 109.46654 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.46794 * 60.00127 * 8 7 6 35 35 H 1.09000 * 109.46985 * 180.02562 * 8 7 6 36 36 H 1.08993 * 109.47182 * 300.00250 * 8 7 6 37 37 H 1.09003 * 109.47255 * 59.99338 * 9 7 6 38 38 H 1.09005 * 109.47155 * 179.97438 * 9 7 6 39 39 H 1.09003 * 109.46953 * 299.99335 * 9 7 6 40 40 H 1.08999 * 109.58632 * 353.41726 * 14 13 11 41 41 H 1.09000 * 109.58801 * 113.84415 * 14 13 11 42 42 H 1.08997 * 109.56673 * 185.54743 * 15 14 13 43 43 H 1.08999 * 109.38684 * 65.51316 * 15 14 13 44 44 H 1.08998 * 109.46203 * 301.21699 * 16 15 14 45 45 H 1.09006 * 109.46172 * 181.26355 * 16 15 14 46 46 H 1.09000 * 109.46826 * 94.30922 * 20 19 17 47 47 H 1.08991 * 109.47165 * 214.30851 * 20 19 17 48 48 H 1.08996 * 109.46984 * 334.31423 * 20 19 17 49 49 H 0.96996 * 120.00157 * 180.02562 * 24 23 21 50 50 H 1.09003 * 109.58381 * 246.15567 * 29 13 11 51 51 H 1.08997 * 109.58904 * 6.57868 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3018 1.0821 0.0000 4 1 2.0028 2.0048 -0.0007 5 7 3.6341 0.6543 0.0006 6 6 3.6590 -0.6500 0.0004 7 6 4.8951 -1.5120 0.0014 8 6 5.7269 -1.2124 -1.2473 9 6 5.7251 -1.2119 1.2512 10 6 2.3241 -1.1127 0.0060 11 6 1.8858 -2.5203 0.0140 12 8 1.7051 -3.1070 -1.0357 13 7 1.6854 -3.1569 1.1850 14 6 1.9054 -2.4634 2.4614 15 6 2.8640 -3.2891 3.3176 16 6 2.3197 -4.7122 3.4607 17 6 2.2199 -5.3635 2.0795 18 1 3.2037 -5.3756 1.6105 19 7 1.7285 -6.7364 2.2204 20 6 0.4192 -6.9870 2.8281 21 6 2.4929 -7.7855 1.7843 22 1 3.5606 -7.6661 1.6732 23 6 1.8957 -9.0022 1.4850 24 7 0.5861 -9.0850 1.3825 25 14 2.9506 -10.5223 1.2278 26 1 3.7295 -10.7988 2.4615 27 1 2.0780 -11.6845 0.9229 28 1 3.8827 -10.2919 0.0951 29 6 1.2491 -4.5598 1.2093 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3632 0.8902 0.5135 32 1 -0.3633 -0.8898 0.5142 33 1 4.6053 -2.5628 0.0014 34 1 6.0168 -0.1617 -1.2473 35 1 6.6208 -1.8363 -1.2467 36 1 5.1357 -1.4262 -2.1376 37 1 5.1325 -1.4253 2.1408 38 1 6.6190 -1.8357 1.2522 39 1 6.0150 -0.1611 1.2512 40 1 2.3392 -1.4812 2.2736 41 1 0.9560 -2.3518 2.9851 42 1 2.9569 -2.8342 4.3037 43 1 3.8422 -3.3204 2.8378 44 1 1.3311 -4.6786 3.9185 45 1 2.9913 -5.2964 4.0900 46 1 -0.3361 -7.0622 2.0457 47 1 0.4526 -7.9193 3.3916 48 1 0.1668 -6.1658 3.4989 49 1 0.1687 -9.9353 1.1737 50 1 0.2450 -4.6229 1.6285 51 1 1.2499 -4.9603 0.1955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027643421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:34 Heat of formation + Delta-G solvation = 47.567300 kcal Electronic energy + Delta-G solvation = -30837.799472 eV Core-core repulsion = 26966.960167 eV Total energy + Delta-G solvation = -3870.839305 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.67140 -39.43178 -37.22519 -35.85128 -34.99592 -32.47556 -32.11243 -31.25703 -30.83749 -28.75924 -27.48385 -27.18300 -25.97211 -25.07846 -23.56487 -23.36501 -22.00741 -21.41916 -19.26415 -19.14857 -18.56745 -17.59666 -16.73457 -16.49463 -15.58670 -15.14746 -14.97489 -14.84921 -14.58266 -14.34716 -14.01785 -13.88162 -13.58350 -13.45559 -13.25546 -13.19204 -12.80390 -12.72912 -12.58141 -12.36859 -12.22109 -12.20677 -11.84089 -11.54161 -11.28622 -11.13824 -11.11381 -10.95430 -10.74676 -10.65435 -10.56737 -10.36488 -10.30585 -10.14793 -9.82258 -9.71651 -9.60293 -9.48847 -8.62994 -8.53432 -8.23371 -6.72194 -5.68383 -3.13912 1.56372 2.36830 2.54243 2.85899 3.40294 3.44552 3.48124 3.49877 4.24634 4.46618 4.53330 4.70209 4.90646 4.92948 5.05335 5.10550 5.19049 5.19755 5.27165 5.41487 5.42744 5.49587 5.58793 5.59832 5.60804 5.66994 5.69588 5.78584 5.82826 5.84174 5.94705 5.98944 6.06828 6.14816 6.18322 6.23560 6.28842 6.37043 6.44416 6.56685 6.74798 6.83774 6.98425 7.00575 7.04960 7.42189 7.47117 7.75493 7.77398 7.85176 8.42940 8.53319 9.27605 9.90310 10.38602 11.36477 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015070 B = 0.003458 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.552332 B = 8096.000417 C = 8632.758761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.123 3.877 3 N -0.466 5.466 4 H 0.439 0.561 5 N -0.291 5.291 6 C 0.127 3.873 7 C -0.020 4.020 8 C -0.141 4.141 9 C -0.141 4.141 10 C -0.267 4.267 11 C 0.591 3.409 12 O -0.535 6.535 13 N -0.597 5.597 14 C 0.113 3.887 15 C -0.131 4.131 16 C -0.132 4.132 17 C 0.169 3.831 18 H 0.064 0.936 19 N -0.592 5.592 20 C 0.162 3.838 21 C -0.255 4.255 22 H 0.068 0.932 23 C 0.004 3.996 24 N -0.907 5.907 25 Si 0.905 3.095 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.283 1.283 29 C 0.098 3.902 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.028 0.972 47 H 0.044 0.956 48 H -0.001 1.001 49 H 0.253 0.747 50 H 0.061 0.939 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 22.113 2.192 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.009 4.009 3 N -0.173 5.173 4 H 0.283 0.717 5 N -0.113 5.113 6 C -0.041 4.041 7 C -0.041 4.041 8 C -0.199 4.199 9 C -0.199 4.199 10 C -0.282 4.282 11 C 0.376 3.624 12 O -0.412 6.412 13 N -0.330 5.330 14 C -0.010 4.010 15 C -0.170 4.170 16 C -0.172 4.172 17 C 0.060 3.940 18 H 0.083 0.917 19 N -0.313 5.313 20 C 0.018 3.982 21 C -0.384 4.384 22 H 0.086 0.914 23 C -0.195 4.195 24 N -0.552 5.552 25 Si 0.735 3.265 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.209 1.209 29 C -0.025 4.025 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.062 0.938 48 H 0.017 0.983 49 H 0.063 0.937 50 H 0.079 0.921 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.209 22.638 1.598 22.920 hybrid contribution -0.331 -1.025 -0.143 1.087 sum 2.878 21.613 1.455 21.852 Atomic orbital electron populations 1.20552 0.86589 1.04284 1.04162 1.21330 0.94385 0.86738 0.98444 1.45958 1.04140 1.08074 1.59099 0.71661 1.77024 0.95498 1.12515 1.26225 1.22253 0.94081 0.91007 0.96744 1.19696 0.89848 0.97609 0.96898 1.21790 0.99482 1.01977 0.96637 1.21818 0.99558 1.02078 0.96423 1.19948 0.92944 0.93707 1.21609 1.17364 0.76876 0.84598 0.83525 1.90795 1.51457 1.67481 1.31454 1.48247 1.66337 1.13333 1.05130 1.21541 0.99276 0.95717 0.84458 1.21835 0.99175 0.96788 0.99167 1.22079 1.00924 0.94092 1.00100 1.20611 0.96234 0.85054 0.92094 0.91731 1.43934 1.19037 0.99465 1.68899 1.20784 0.86572 0.96093 0.94761 1.19185 0.90101 0.89953 1.39206 0.91408 1.25006 0.95680 0.98893 0.99900 1.70058 1.08034 1.24582 1.52537 0.86329 0.79407 0.82684 0.78090 1.21129 1.21665 1.20899 1.22552 0.98542 0.77988 1.03456 0.89423 0.90531 0.89258 0.89202 0.92152 0.91798 0.92390 0.92349 0.91769 0.92125 0.90534 0.91939 0.91448 0.91679 0.92325 0.91753 0.95366 0.93750 0.98306 0.93714 0.92090 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.25 36.01 0.37 -0.41 16 2 C 0.12 1.33 7.29 -81.60 -0.60 0.74 16 3 N -0.47 -4.46 7.29 33.86 0.25 -4.22 16 4 H 0.44 2.57 8.96 -182.73 -1.64 0.93 16 5 N -0.29 -3.56 12.63 33.89 0.43 -3.13 16 6 C 0.13 1.68 5.68 -82.02 -0.47 1.21 16 7 C -0.02 -0.25 3.31 -91.77 -0.30 -0.55 16 8 C -0.14 -1.57 9.18 37.16 0.34 -1.23 16 9 C -0.14 -1.44 9.18 37.16 0.34 -1.10 16 10 C -0.27 -3.74 3.85 -105.07 -0.40 -4.15 16 11 C 0.59 10.08 6.55 -12.52 -0.08 10.00 16 12 O -0.54 -11.46 16.52 5.28 0.09 -11.37 16 13 N -0.60 -9.54 2.98 -174.32 -0.52 -10.06 16 14 C 0.11 1.43 6.31 -3.93 -0.02 1.40 16 15 C -0.13 -1.67 6.06 -26.83 -0.16 -1.83 16 16 C -0.13 -2.16 5.13 -26.70 -0.14 -2.30 16 17 C 0.17 3.43 2.74 -67.83 -0.19 3.24 16 18 H 0.06 1.39 7.86 -51.93 -0.41 0.98 16 19 N -0.59 -14.61 2.82 -173.38 -0.49 -15.09 16 20 C 0.16 3.92 7.91 59.85 0.47 4.39 16 21 C -0.25 -7.00 9.60 -15.06 -0.14 -7.15 16 22 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 23 C 0.00 0.10 5.11 -17.43 -0.09 0.01 16 24 N -0.91 -26.49 10.63 55.49 0.59 -25.90 16 25 Si 0.90 22.06 29.57 -169.99 -5.03 17.03 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 C 0.10 1.90 5.79 -3.73 -0.02 1.88 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.81 7.95 -51.93 -0.41 0.40 16 33 H 0.09 1.26 7.56 -51.93 -0.39 0.87 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.89 6.26 -51.93 -0.33 0.57 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 44 H 0.06 0.95 6.71 -51.93 -0.35 0.61 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.03 0.74 7.41 -51.93 -0.39 0.36 16 47 H 0.04 1.16 7.20 -51.93 -0.37 0.78 16 48 H 0.00 -0.03 6.45 -51.93 -0.33 -0.37 16 49 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 50 H 0.06 1.18 7.51 -51.93 -0.39 0.79 16 51 H 0.09 2.11 7.00 -51.93 -0.36 1.74 16 LS Contribution 402.40 15.07 6.06 6.06 Total: -1.00 -33.39 402.40 -9.70 -43.09 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -9.99 Total: -0.57 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -1.09 Total: 4.16 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: 0.26 Total: -58.40 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.39 -9.70 -43.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027643421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.658 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds