Wall clock time and date at job start Tue Mar 31 2020 18:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30839 * 125.89970 * 2 1 4 4 N 1.40082 * 108.20909 * 179.97438 * 3 2 1 5 5 H 0.96998 * 126.04273 * 179.97438 * 4 3 2 6 6 C 1.34947 * 107.92377 * 359.75780 * 4 3 2 7 7 C 1.50704 * 126.12930 * 180.24296 * 6 4 3 8 8 C 1.35316 * 107.74477 * 0.38858 * 6 4 3 9 9 C 1.50701 * 126.03673 * 179.87671 * 8 6 4 10 10 C 1.52999 * 109.47098 * 269.71104 * 9 8 6 11 11 C 1.50699 * 109.47276 * 180.02562 * 10 9 8 12 12 O 1.21286 * 119.99828 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00136 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00265 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47555 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47384 * 175.45559 * 15 14 13 17 17 C 1.53006 * 115.54895 * 279.32329 * 16 15 14 18 18 N 1.46502 * 109.46841 * 294.95270 * 17 16 15 19 19 C 1.36938 * 119.99360 * 174.37475 * 18 17 16 20 20 H 1.07991 * 120.00433 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99354 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00395 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99781 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46849 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.46863 * 119.99936 * 23 21 19 26 26 H 1.48498 * 109.47058 * 239.99924 * 23 21 19 27 27 C 1.52994 * 117.50111 * 133.61668 * 16 15 14 28 28 C 1.53000 * 117.50137 * 64.99150 * 16 15 14 29 29 H 1.09002 * 109.46831 * 270.02751 * 1 2 3 30 30 H 1.08995 * 109.47110 * 30.02582 * 1 2 3 31 31 H 1.09003 * 109.47080 * 150.02574 * 1 2 3 32 32 H 1.09008 * 109.46664 * 270.17570 * 7 6 4 33 33 H 1.08996 * 109.47018 * 30.16833 * 7 6 4 34 34 H 1.08997 * 109.47182 * 150.17706 * 7 6 4 35 35 H 1.09007 * 109.46923 * 149.71553 * 9 8 6 36 36 H 1.09001 * 109.47281 * 29.71278 * 9 8 6 37 37 H 1.09001 * 109.47196 * 300.00225 * 10 9 8 38 38 H 1.09007 * 109.46867 * 60.00414 * 10 9 8 39 39 H 0.96997 * 120.00099 * 359.97438 * 13 11 10 40 40 H 1.09001 * 109.46874 * 300.00074 * 14 13 11 41 41 H 1.09001 * 109.46938 * 59.98959 * 14 13 11 42 42 H 1.09005 * 109.46878 * 295.45775 * 15 14 13 43 43 H 1.09000 * 109.47287 * 55.45102 * 15 14 13 44 44 H 1.08997 * 109.46683 * 54.94893 * 17 16 15 45 45 H 1.08997 * 109.47201 * 174.95153 * 17 16 15 46 46 H 0.96997 * 120.00329 * 354.36851 * 18 17 16 47 47 H 0.96996 * 120.00338 * 179.97438 * 22 21 19 48 48 H 1.09001 * 117.49656 * 359.97438 * 27 16 15 49 49 H 1.08996 * 117.50378 * 145.01903 * 27 16 15 50 50 H 1.08994 * 117.50020 * 214.98078 * 28 16 15 51 51 H 1.09004 * 117.49412 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 1 4.3908 1.2080 0.0004 6 6 3.6142 -0.7153 0.0064 7 6 4.8350 -1.5988 0.0142 8 6 2.3272 -1.1329 0.0006 9 6 1.8600 -2.5657 0.0014 10 6 1.7025 -3.0515 -1.4409 11 6 1.2348 -4.4841 -1.4402 12 8 1.0464 -5.0600 -0.3895 13 7 1.0267 -5.1257 -2.6070 14 6 0.5715 -6.5182 -2.6064 15 6 0.4141 -7.0040 -4.0486 16 6 0.0486 -8.4897 -4.0493 17 6 1.2189 -9.4572 -3.8607 18 7 2.1261 -9.3553 -5.0065 19 6 3.3090 -10.0452 -5.0065 20 1 3.5733 -10.6639 -4.1618 21 6 4.1685 -9.9491 -6.0924 22 7 3.8462 -9.1954 -7.1221 23 14 5.7825 -10.8895 -6.0922 24 1 5.9074 -11.6580 -4.8277 25 1 5.8101 -11.8256 -7.2445 26 1 6.9128 -9.9329 -6.2043 27 6 -1.0969 -8.9350 -4.9604 28 6 -1.2999 -8.8858 -3.4447 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 5.1346 -1.8137 -1.0117 33 1 5.6485 -1.0899 0.5312 34 1 4.6050 -2.5319 0.5285 35 1 0.9009 -2.6349 0.5148 36 1 2.5933 -3.1867 0.5159 37 1 0.9692 -2.4305 -1.9554 38 1 2.6616 -2.9824 -1.9543 39 1 1.1777 -4.6652 -3.4473 40 1 1.3039 -7.1396 -2.0911 41 1 -0.3879 -6.5865 -2.0935 42 1 -0.3757 -6.4353 -4.5394 43 1 1.3521 -6.8604 -4.5848 44 1 1.7569 -9.2030 -2.9475 45 1 0.8395 -10.4764 -3.7872 46 1 1.8889 -8.7994 -5.7651 47 1 4.4468 -9.1279 -7.8807 48 1 -1.5905 -8.1694 -5.5590 49 1 -1.0171 -9.9174 -5.4258 50 1 -1.3535 -9.8358 -2.9130 51 1 -1.9269 -8.0878 -3.0468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168079110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:13 Heat of formation + Delta-G solvation = 43.865539 kcal Electronic energy + Delta-G solvation = -28009.335313 eV Core-core repulsion = 24138.335488 eV Total energy + Delta-G solvation = -3870.999825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.65223 -39.64964 -38.24075 -34.89409 -34.30127 -33.90783 -33.63875 -30.99702 -30.75485 -29.75984 -28.18841 -27.31558 -25.96979 -24.53446 -22.91918 -22.70449 -21.68813 -20.49578 -20.35025 -19.47240 -18.50688 -17.60955 -17.09164 -16.77758 -15.91928 -15.83830 -15.35736 -15.17938 -14.67853 -14.41980 -14.21580 -13.94629 -13.81397 -13.62239 -13.43416 -13.13677 -12.99926 -12.82835 -12.69533 -12.64109 -12.51568 -12.26738 -12.19044 -12.02477 -11.85989 -11.42879 -11.22573 -11.10641 -10.95202 -10.85665 -10.66758 -10.57669 -10.12390 -9.90221 -9.81117 -9.62559 -9.51014 -9.31160 -8.94349 -8.84659 -8.60813 -6.89865 -5.76376 -3.03975 1.57147 2.40803 2.56914 2.72382 3.29729 3.42799 3.49003 3.50902 4.07876 4.33506 4.39303 4.61451 4.70970 4.74674 4.90336 4.99506 5.04356 5.07385 5.11428 5.15928 5.17894 5.32635 5.35342 5.36658 5.42562 5.47797 5.51234 5.56564 5.62418 5.68439 5.70368 5.79889 5.80971 5.93000 6.00915 6.09225 6.18676 6.22819 6.23941 6.43523 6.45222 6.47697 6.51185 6.60802 6.77637 6.86064 7.00629 7.42894 7.57951 7.71399 8.30386 8.42898 9.54598 10.13213 10.49036 11.46589 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.002238 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.723965 B =12509.987873 C =14357.979985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.085 3.915 3 N -0.299 5.299 4 N -0.478 5.478 5 H 0.437 0.563 6 C 0.093 3.907 7 C -0.098 4.098 8 C -0.234 4.234 9 C -0.023 4.023 10 C -0.135 4.135 11 C 0.510 3.490 12 O -0.545 6.545 13 N -0.729 5.729 14 C 0.125 3.875 15 C -0.091 4.091 16 C -0.119 4.119 17 C 0.187 3.813 18 N -0.728 5.728 19 C -0.235 4.235 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.934 5.934 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.165 4.165 28 C -0.177 4.177 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.400 0.600 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.027 0.973 45 H 0.017 0.983 46 H 0.385 0.615 47 H 0.254 0.746 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.092 0.908 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 18.537 12.594 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 N -0.122 5.122 4 N -0.186 5.186 5 H 0.280 0.720 6 C -0.036 4.036 7 C -0.156 4.156 8 C -0.245 4.245 9 C -0.061 4.061 10 C -0.175 4.175 11 C 0.296 3.704 12 O -0.422 6.422 13 N -0.380 5.380 14 C 0.001 3.999 15 C -0.129 4.129 16 C -0.120 4.120 17 C 0.060 3.940 18 N -0.372 5.372 19 C -0.367 4.367 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.583 5.583 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.202 4.202 28 C -0.215 4.215 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.234 0.766 40 H 0.089 0.911 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.105 0.895 44 H 0.045 0.955 45 H 0.034 0.966 46 H 0.218 0.782 47 H 0.063 0.937 48 H 0.107 0.893 49 H 0.114 0.886 50 H 0.110 0.890 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.331 19.258 13.412 24.308 hybrid contribution 1.448 -0.624 -0.894 1.813 sum -4.883 18.634 12.519 22.974 Atomic orbital electron populations 1.20214 0.86717 1.03393 1.03152 1.22257 0.96955 0.90216 0.98783 1.77276 0.86516 1.22394 1.26042 1.46149 1.07274 1.04872 1.60354 0.71958 1.20948 0.97089 0.84867 1.00651 1.20533 0.92677 0.98589 1.03797 1.19729 0.91114 0.96309 1.17350 1.19570 1.02484 0.89400 0.94692 1.21678 1.03256 0.92755 0.99826 1.20718 0.77202 0.88790 0.83664 1.90699 1.51625 1.68642 1.31256 1.46105 1.68864 1.14404 1.08658 1.21341 0.99877 0.80964 0.97675 1.21250 1.02971 0.93333 0.95300 1.21567 0.90522 0.95088 1.04809 1.20185 0.88337 0.93784 0.91707 1.42303 1.19583 1.57001 1.18271 1.19286 0.95021 1.20715 1.01653 0.91215 1.24715 0.98979 1.00595 0.96775 1.69665 1.37556 1.43215 1.07834 0.86140 0.83859 0.79139 0.77228 1.20579 1.21927 1.21931 1.22963 1.01828 1.02968 0.92469 1.22971 0.99439 1.02724 0.96369 0.90398 0.90893 0.90229 0.89806 0.91091 0.89138 0.90426 0.90591 0.89091 0.89043 0.76598 0.91068 0.91881 0.92029 0.89503 0.95539 0.96572 0.78164 0.93654 0.89345 0.88630 0.88964 0.89260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.12 36.00 0.36 -0.20 16 2 C 0.08 0.85 7.22 -82.41 -0.59 0.26 16 3 N -0.30 -3.29 12.70 33.67 0.43 -2.86 16 4 N -0.48 -4.11 7.36 33.48 0.25 -3.86 16 5 H 0.44 2.43 8.96 -182.61 -1.64 0.79 16 6 C 0.09 0.79 7.21 -82.26 -0.59 0.20 16 7 C -0.10 -0.58 10.22 36.01 0.37 -0.21 16 8 C -0.23 -2.24 5.35 -105.05 -0.56 -2.80 16 9 C -0.02 -0.21 4.45 -27.88 -0.12 -0.34 16 10 C -0.13 -1.22 5.68 -27.88 -0.16 -1.38 16 11 C 0.51 6.35 7.83 -10.99 -0.09 6.26 16 12 O -0.54 -8.85 15.98 5.55 0.09 -8.76 16 13 N -0.73 -8.63 5.56 -60.29 -0.33 -8.96 16 14 C 0.12 1.72 5.51 -4.04 -0.02 1.69 16 15 C -0.09 -1.29 5.24 -26.74 -0.14 -1.43 16 16 C -0.12 -1.88 1.52 -154.51 -0.23 -2.11 16 17 C 0.19 3.76 6.10 -4.04 -0.02 3.74 16 18 N -0.73 -18.05 5.30 -59.91 -0.32 -18.37 16 19 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -27.84 13.06 55.49 0.72 -27.12 16 23 Si 0.90 22.33 29.55 -169.99 -5.02 17.30 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 C -0.17 -2.41 9.90 -26.73 -0.26 -2.67 16 28 C -0.18 -2.35 9.57 -26.73 -0.26 -2.61 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 32 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.55 7.14 -51.93 -0.37 0.18 16 35 H 0.08 0.78 7.88 -51.93 -0.41 0.37 16 36 H 0.08 0.77 7.10 -51.93 -0.37 0.40 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.40 3.82 8.47 -40.82 -0.35 3.48 16 40 H 0.07 1.15 7.69 -51.93 -0.40 0.76 16 41 H 0.06 0.86 7.80 -51.93 -0.41 0.45 16 42 H 0.06 0.76 7.94 -51.93 -0.41 0.35 16 43 H 0.09 1.45 7.64 -51.93 -0.40 1.05 16 44 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 45 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 46 H 0.38 9.99 7.46 -40.82 -0.30 9.69 16 47 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.09 1.16 8.08 -51.93 -0.42 0.74 16 49 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 50 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 51 H 0.09 1.05 7.98 -51.93 -0.41 0.63 16 LS Contribution 421.32 15.07 6.35 6.35 Total: -1.00 -34.61 421.32 -10.46 -45.07 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -10.04 Total: 10.02 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.57 Total: -8.80 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.75 Total: -61.18 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -34.61 -10.46 -45.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168079110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.932 kcal (2) G-P(sol) polarization free energy of solvation -34.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds