Wall clock time and date at job start Tue Mar 31 2020 18:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30839 * 125.89970 * 2 1 4 4 N 1.40082 * 108.20909 * 179.97438 * 3 2 1 5 5 H 0.96998 * 126.04273 * 179.97438 * 4 3 2 6 6 C 1.34947 * 107.92377 * 359.75780 * 4 3 2 7 7 C 1.50704 * 126.12930 * 180.24296 * 6 4 3 8 8 C 1.35316 * 107.74477 * 0.38858 * 6 4 3 9 9 C 1.50701 * 126.03673 * 179.87671 * 8 6 4 10 10 C 1.52999 * 109.47098 * 269.71104 * 9 8 6 11 11 C 1.50699 * 109.47276 * 180.02562 * 10 9 8 12 12 O 1.21286 * 119.99828 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00136 * 180.02562 * 11 10 9 14 14 C 1.46502 * 120.00265 * 180.02562 * 13 11 10 15 15 C 1.52996 * 109.47555 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47384 * 175.45559 * 15 14 13 17 17 C 1.53006 * 115.54895 * 279.32329 * 16 15 14 18 18 N 1.46502 * 109.46841 * 294.95270 * 17 16 15 19 19 C 1.36938 * 119.99360 * 174.37475 * 18 17 16 20 20 H 1.07991 * 120.00433 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99354 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00395 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99781 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46849 * 0.02562 * 23 21 19 25 25 H 1.48494 * 109.46863 * 119.99936 * 23 21 19 26 26 H 1.48498 * 109.47058 * 239.99924 * 23 21 19 27 27 C 1.52994 * 117.50111 * 133.61668 * 16 15 14 28 28 C 1.53000 * 117.50137 * 64.99150 * 16 15 14 29 29 H 1.09002 * 109.46831 * 270.02751 * 1 2 3 30 30 H 1.08995 * 109.47110 * 30.02582 * 1 2 3 31 31 H 1.09003 * 109.47080 * 150.02574 * 1 2 3 32 32 H 1.09008 * 109.46664 * 270.17570 * 7 6 4 33 33 H 1.08996 * 109.47018 * 30.16833 * 7 6 4 34 34 H 1.08997 * 109.47182 * 150.17706 * 7 6 4 35 35 H 1.09007 * 109.46923 * 149.71553 * 9 8 6 36 36 H 1.09001 * 109.47281 * 29.71278 * 9 8 6 37 37 H 1.09001 * 109.47196 * 300.00225 * 10 9 8 38 38 H 1.09007 * 109.46867 * 60.00414 * 10 9 8 39 39 H 0.96997 * 120.00099 * 359.97438 * 13 11 10 40 40 H 1.09001 * 109.46874 * 300.00074 * 14 13 11 41 41 H 1.09001 * 109.46938 * 59.98959 * 14 13 11 42 42 H 1.09005 * 109.46878 * 295.45775 * 15 14 13 43 43 H 1.09000 * 109.47287 * 55.45102 * 15 14 13 44 44 H 1.08997 * 109.46683 * 54.94893 * 17 16 15 45 45 H 1.08997 * 109.47201 * 174.95153 * 17 16 15 46 46 H 0.96997 * 120.00329 * 354.36851 * 18 17 16 47 47 H 0.96996 * 120.00338 * 179.97438 * 22 21 19 48 48 H 1.09001 * 117.49656 * 359.97438 * 27 16 15 49 49 H 1.08996 * 117.50378 * 145.01903 * 27 16 15 50 50 H 1.08994 * 117.50020 * 214.98078 * 28 16 15 51 51 H 1.09004 * 117.49412 * 0.02562 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 1 4.3908 1.2080 0.0004 6 6 3.6142 -0.7153 0.0064 7 6 4.8350 -1.5988 0.0142 8 6 2.3272 -1.1329 0.0006 9 6 1.8600 -2.5657 0.0014 10 6 1.7025 -3.0515 -1.4409 11 6 1.2348 -4.4841 -1.4402 12 8 1.0464 -5.0600 -0.3895 13 7 1.0267 -5.1257 -2.6070 14 6 0.5715 -6.5182 -2.6064 15 6 0.4141 -7.0040 -4.0486 16 6 0.0486 -8.4897 -4.0493 17 6 1.2189 -9.4572 -3.8607 18 7 2.1261 -9.3553 -5.0065 19 6 3.3090 -10.0452 -5.0065 20 1 3.5733 -10.6639 -4.1618 21 6 4.1685 -9.9491 -6.0924 22 7 3.8462 -9.1954 -7.1221 23 14 5.7825 -10.8895 -6.0922 24 1 5.9074 -11.6580 -4.8277 25 1 5.8101 -11.8256 -7.2445 26 1 6.9128 -9.9329 -6.2043 27 6 -1.0969 -8.9350 -4.9604 28 6 -1.2999 -8.8858 -3.4447 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8897 -0.5142 31 1 -0.3633 -0.8902 -0.5134 32 1 5.1346 -1.8137 -1.0117 33 1 5.6485 -1.0899 0.5312 34 1 4.6050 -2.5319 0.5285 35 1 0.9009 -2.6349 0.5148 36 1 2.5933 -3.1867 0.5159 37 1 0.9692 -2.4305 -1.9554 38 1 2.6616 -2.9824 -1.9543 39 1 1.1777 -4.6652 -3.4473 40 1 1.3039 -7.1396 -2.0911 41 1 -0.3879 -6.5865 -2.0935 42 1 -0.3757 -6.4353 -4.5394 43 1 1.3521 -6.8604 -4.5848 44 1 1.7569 -9.2030 -2.9475 45 1 0.8395 -10.4764 -3.7872 46 1 1.8889 -8.7994 -5.7651 47 1 4.4468 -9.1279 -7.8807 48 1 -1.5905 -8.1694 -5.5590 49 1 -1.0171 -9.9174 -5.4258 50 1 -1.3535 -9.8358 -2.9130 51 1 -1.9269 -8.0878 -3.0468 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168079110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:12 Heat of formation + Delta-G solvation = 21.061040 kcal Electronic energy + Delta-G solvation = -28010.324190 eV Core-core repulsion = 24138.335488 eV Total energy + Delta-G solvation = -3871.988702 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.33109 -40.69203 -39.49312 -36.09975 -35.68690 -35.11462 -34.26641 -32.76586 -31.80792 -30.68832 -28.84131 -28.02735 -27.71806 -25.46442 -24.61140 -23.92427 -22.84934 -21.44049 -21.06751 -20.16792 -19.91014 -18.99874 -18.30524 -17.73891 -16.97829 -16.86308 -16.64944 -16.19605 -16.06818 -15.71443 -15.31594 -15.03067 -14.87374 -14.71573 -14.47543 -14.14848 -14.10565 -13.83920 -13.70166 -13.45081 -13.28955 -13.19567 -13.14477 -12.97097 -12.88267 -12.80938 -12.66565 -12.50340 -12.25110 -12.09682 -11.95710 -11.91608 -11.79709 -11.38247 -11.08462 -10.92935 -10.82318 -10.52797 -10.19002 -9.99862 -9.30656 -8.96054 -7.93833 -5.21153 0.90051 1.47215 1.47647 1.57673 1.69570 1.74259 1.98019 2.33980 2.55236 2.92915 3.39234 3.70557 3.75888 3.84369 3.87343 3.94268 4.01717 4.12518 4.16425 4.21600 4.27469 4.34146 4.46093 4.51534 4.53303 4.62313 4.69324 4.73169 4.76539 4.82095 4.84357 4.86192 4.97088 5.01362 5.03511 5.10202 5.13760 5.17861 5.23013 5.28435 5.31334 5.36274 5.38993 5.41590 5.50558 5.54805 5.77438 6.28845 6.44557 6.64446 6.75245 7.34461 7.36025 8.12218 8.38322 9.29590 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.002238 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.723965 B =12509.987873 C =14357.979985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.075 3.925 3 N -0.332 5.332 4 N -0.474 5.474 5 H 0.448 0.552 6 C 0.097 3.903 7 C -0.097 4.097 8 C -0.251 4.251 9 C -0.014 4.014 10 C -0.124 4.124 11 C 0.509 3.491 12 O -0.586 6.586 13 N -0.723 5.723 14 C 0.134 3.866 15 C -0.077 4.077 16 C -0.139 4.139 17 C 0.187 3.813 18 N -0.735 5.735 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.072 4.072 22 N -0.965 5.965 23 Si 0.969 3.031 24 H -0.270 1.270 25 H -0.293 1.293 26 H -0.291 1.291 27 C -0.165 4.165 28 C -0.151 4.151 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.413 0.587 40 H 0.040 0.960 41 H 0.070 0.930 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.018 0.982 45 H 0.012 0.988 46 H 0.377 0.623 47 H 0.251 0.749 48 H 0.108 0.892 49 H 0.079 0.921 50 H 0.095 0.905 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.771 19.224 12.808 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 N -0.156 5.156 4 N -0.184 5.184 5 H 0.294 0.706 6 C -0.032 4.032 7 C -0.155 4.155 8 C -0.262 4.262 9 C -0.053 4.053 10 C -0.164 4.164 11 C 0.297 3.703 12 O -0.466 6.466 13 N -0.375 5.375 14 C 0.010 3.990 15 C -0.114 4.114 16 C -0.140 4.140 17 C 0.061 3.939 18 N -0.378 5.378 19 C -0.375 4.375 20 H 0.087 0.913 21 C -0.264 4.264 22 N -0.616 5.616 23 Si 0.798 3.202 24 H -0.195 1.195 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.202 4.202 28 C -0.188 4.188 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.249 0.751 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.036 0.964 45 H 0.029 0.971 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.126 0.874 49 H 0.097 0.903 50 H 0.113 0.887 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.756 19.960 13.635 25.099 hybrid contribution 1.571 -0.867 -0.907 2.010 sum -5.185 19.093 12.728 23.525 Atomic orbital electron populations 1.20301 0.85353 1.04068 1.03770 1.22671 0.98074 0.90140 0.98240 1.77221 0.87577 1.23321 1.27494 1.46190 1.07147 1.05187 1.59874 0.70631 1.21334 0.97700 0.85037 0.99172 1.20619 0.92175 0.98126 1.04575 1.19791 0.91653 0.96083 1.18687 1.19440 1.01789 0.89345 0.94768 1.21656 1.04315 0.90424 0.99975 1.21301 0.76212 0.89841 0.82954 1.90682 1.53468 1.69798 1.32686 1.46053 1.68371 1.13681 1.09348 1.21124 0.99267 0.81551 0.97078 1.21094 1.02398 0.92686 0.95258 1.21420 0.89975 0.94975 1.07626 1.20240 0.89179 0.94803 0.89694 1.42438 1.19600 1.56427 1.19289 1.19627 0.96061 1.20372 1.01456 0.91250 1.25478 1.02280 1.01998 0.96689 1.69803 1.38660 1.44798 1.08371 0.85140 0.79880 0.77803 0.77352 1.19472 1.22024 1.21851 1.23007 1.00951 1.02680 0.93593 1.23053 0.96851 1.03499 0.95384 0.89786 0.90469 0.89252 0.88931 0.89229 0.89390 0.91184 0.91575 0.87011 0.87734 0.75099 0.94146 0.91160 0.89308 0.92325 0.96417 0.97056 0.79077 0.94002 0.87369 0.90270 0.88673 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.12 71.23 0.72 -0.33 16 2 C 0.07 1.45 7.22 43.10 0.31 1.76 16 3 N -0.33 -7.09 12.70 -47.39 -0.60 -7.69 16 4 N -0.47 -7.66 7.36 -48.00 -0.35 -8.01 16 5 H 0.45 4.48 8.96 -213.33 -1.91 2.57 16 6 C 0.10 1.53 7.21 41.41 0.30 1.83 16 7 C -0.10 -0.99 10.22 71.24 0.73 -0.26 16 8 C -0.25 -4.56 5.35 -20.14 -0.11 -4.67 16 9 C -0.01 -0.26 4.45 29.85 0.13 -0.13 16 10 C -0.12 -2.04 5.68 29.85 0.17 -1.87 16 11 C 0.51 12.17 7.83 87.66 0.69 12.86 16 12 O -0.59 -18.93 15.98 -3.05 -0.05 -18.98 16 13 N -0.72 -16.21 5.56 -463.06 -2.57 -18.79 16 14 C 0.13 3.57 5.51 86.38 0.48 4.04 16 15 C -0.08 -2.09 5.24 30.59 0.16 -1.93 16 16 C -0.14 -4.25 1.52 -52.18 -0.08 -4.33 16 17 C 0.19 7.60 6.10 86.38 0.53 8.13 16 18 N -0.73 -37.06 5.30 -343.45 -1.82 -38.88 16 19 C -0.24 -13.65 9.99 84.03 0.84 -12.81 16 20 H 0.07 3.81 7.83 -2.92 -0.02 3.79 16 21 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 22 N -0.97 -58.21 13.06 21.65 0.28 -57.92 16 23 Si 0.97 46.10 29.55 68.60 2.03 48.12 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 C -0.17 -4.52 9.90 30.59 0.30 -4.22 16 28 C -0.15 -3.61 9.57 30.59 0.29 -3.32 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.01 7.92 -2.39 -0.02 1.00 16 32 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.09 0.98 7.14 -2.39 -0.02 0.96 16 35 H 0.07 1.37 7.88 -2.38 -0.02 1.35 16 36 H 0.07 1.32 7.10 -2.39 -0.02 1.30 16 37 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.41 7.16 8.47 -92.71 -0.79 6.38 16 40 H 0.04 1.33 7.69 -2.39 -0.02 1.31 16 41 H 0.07 1.79 7.80 -2.39 -0.02 1.77 16 42 H 0.09 1.94 7.94 -2.38 -0.02 1.93 16 43 H 0.06 1.94 7.64 -2.39 -0.02 1.93 16 44 H 0.02 0.75 7.69 -2.39 -0.02 0.73 16 45 H 0.01 0.48 8.09 -2.39 -0.02 0.46 16 46 H 0.38 19.96 7.46 -92.71 -0.69 19.27 16 47 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 48 H 0.11 2.53 8.08 -2.39 -0.02 2.51 16 49 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.11 2.23 7.98 -2.38 -0.02 2.21 16 Total: -1.00 -75.07 421.32 0.40 -74.67 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: -2.44 Total: 36.37 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 5.92 Total: -8.89 kcal Atomic # 7 Polarization: -126.23 SS G_CDS: -5.06 Total: -131.29 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.05 Total: -18.98 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.12 kcal Total: -75.07 0.40 -74.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168079110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.733 kcal (2) G-P(sol) polarization free energy of solvation -75.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds